NO30G00390, NO30G00390 (gene) Nannochloropsis oceanica

Overview
NameNO30G00390
Unique NameNO30G00390
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2027
Alignment locationchr30:169750..171776 +

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Properties
Property NameValue
DescriptionRhodanese-like domain protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr30genomechr30:169750..171776 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036873Rhodanese-like_dom_sf
IPR001763Rhodanese-like_dom
Homology
BLAST of NO30G00390 vs. NCBI_GenBank
Match: WP_006909319.1 (MPT-synthase sulfurylase [Cyanobium sp. PCC 7001] >EDY37417.1 rhodanese-like domain protein [Cyanobium sp. PCC 7001])

HSP 1 Score: 93.6 bits (231), Expect = 8.300e-16
Identity = 60/131 (45.80%), Postives = 77/131 (58.78%), Query Frame = 0
Query:   51 VVLVDVRTPEERAVSMLPAAITQEEFERRQEEYRARPEITVVPYCTMGRRSGIYARKLVKKGGFEKEKVRNGEGILL-WTHEGGREGRKEGGRDAMETALLVGPDGRSTRRVHAYGQAWAAYAAEGFEVVL 181
            +VLVDVR P E+AVSMLP AI+ E FERR++ YR+     VVPYCT+G RSG+Y+R+L+++G     + RN  G LL W H G                L +   GR TRRVH Y  AW     EG+E V+
Sbjct:   68 LVLVDVREPREQAVSMLPGAISVEAFERRKQRYRSS---LVVPYCTIGLRSGLYSRQLIQEG----FRTRNLAGSLLAWAHAG----------------LPLEHQGRPTRRVHVYSPAW-NLLPEGYEAVV 174          
BLAST of NO30G00390 vs. NCBI_GenBank
Match: WP_090333996.1 (rhodanese-like domain-containing protein [Nitrosomonas sp. Nm51] >SER63302.1 Rhodanese-related sulfurtransferase [Nitrosomonas sp. Nm51])

HSP 1 Score: 91.7 bits (226), Expect = 3.100e-15
Identity = 52/117 (44.44%), Postives = 74/117 (63.25%), Query Frame = 0
Query:   52 VLVDVRTPEERAVSMLPAAITQEEFERRQEEYRARPEITVVPYCTMGRRSGIYARKLVKKGGFEKEKVRNGEGILLWTHEGGREGRKEGGRDAMETALLVGPDGRSTRRVHAYGQAW 169
            V+VDVRTPEER VSM+P AI+Q++FER + +Y+ +    +V YCT+G RSG YAR L+++ GF+   +   EGIL WTH GG+               L+   G++TRR+H Y + W
Sbjct:   64 VIVDVRTPEERRVSMIPGAISQKDFERNRTDYQNK---KIVVYCTIGYRSGHYAR-LLRQQGFDAYNL--SEGILGWTHIGGQ---------------LINAQGQATRRIHVYSRPW 159          
BLAST of NO30G00390 vs. NCBI_GenBank
Match: CBN76442.1 (bile Acid:Na+ symporter family [Ectocarpus siliculosus])

HSP 1 Score: 87.8 bits (216), Expect = 4.500e-14
Identity = 69/186 (37.10%), Postives = 98/186 (52.69%), Query Frame = 0
Query:   20 AKVAVKSYTDSFPDLAPPISATEVRSLPSDA--VVLVDVRTPEERAVSMLPAAITQEEFE--------RRQEEYRARPEI------TVVPYCTMGRRSGIYARKLVKKGGFEKEKVRNGEGILLWTHEGGREGRKEGGRDAMETALLVGP-----DGRSTRRVHAYGQAWAAYAAEGFEVVLFPSS 185
            A+ +V+  T  F D+   ISA +V  L  +   V+LVDVRT +E  VSML  A+T+EEFE        R  +++R R          V PYCT+G RSG YA+KLV  G      VRN EG++LWTH+ G  G      D +E+    G       G   +R+H +G  W  +A++ FE + F ++
Sbjct:   34 ARASVEKATGHFADV-QTISAKDVLRLEQEGKKVLLVDVRTEDEMKVSMLRGALTREEFENSSLGEAARTGKKFRERSGEGEEAWGVVAPYCTVGFRSGQYAKKLVDLG---YPSVRNSEGVVLWTHDVG-NGLVARAADEVESGGSPGSGPRNGSGVEVKRLHVFGSPW-DHASDDFETIKFTAT 213          
BLAST of NO30G00390 vs. NCBI_GenBank
Match: XP_005784172.1 (hypothetical protein EMIHUDRAFT_231359 [Emiliania huxleyi CCMP1516] >EOD31743.1 hypothetical protein EMIHUDRAFT_231359 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 85.1 bits (209), Expect = 2.900e-13
Identity = 65/173 (37.57%), Postives = 93/173 (53.76%), Query Frame = 0
Query:   19 DAKVA-VKSYTDSFPDLAPPISATEVRSLPSDA--VVLVDVRTPEERAVSMLPAAITQEEFE--RRQEEYRARPEITVVPYCTMGRRSGIYARKLVKKGGF-----EKEKVRNGEGILLWTHEGGREGRKEGGRDAMETALLVGPDGRSTRRVHAYGQAWAAYAAEGFEVVLF 182
            DA +A +++ T  F  L P  SA++V S+      V+L+DVR+P ERAVS LP A+ Q  F    R+E  R    + +VP+CT+G RSG+Y  + ++ GG       +  VRNGEG++LW+H+ G                    DG   R +H YG AW   AA+GF+ V F
Sbjct:    7 DAALAELRARTAGFAGL-PLASASDVISMQQGGRDVILIDVRSPPERAVSTLPGALDQHSFAALAREEPERVAAAV-LVPFCTIGFRSGLYC-EWIRGGGLGMAASSELDVRNGEGVVLWSHDVG----------------TFVQDGAPVRSLHVYGSAW-DLAADGFDTVTF 159          
BLAST of NO30G00390 vs. NCBI_GenBank
Match: WP_090656902.1 (rhodanese-like domain-containing protein [Nitrosomonas marina] >SES88520.1 Rhodanese-related sulfurtransferase [Nitrosomonas marina])

HSP 1 Score: 84.7 bits (208), Expect = 3.800e-13
Identity = 60/151 (39.74%), Postives = 81/151 (53.64%), Query Frame = 0
Query:   21 KVAVKSYTDSFPDLAPPISATEVRSLPSDA---VVLVDVRTPEERAVSMLPAAITQEEFERRQEEYRARPEITVVPYCTMGRRSGIYARKLVKKGGFEKEKVRNGEGILLWTHEGGREGRKEGGRDAMETALLVGPDGRSTRRVHAYGQAW 169
            K A       F D+ P IS   +R L + A   +VLVDVRTPEER +S++P AIT+++FE    +Y+ R   TVV YCT+G RSG Y R+L ++G    +     EGIL W H  GR               LV    ++TR+VH Y + W
Sbjct:   31 KTAYSLVAIQFGDI-PTISNKSLRPLLNKANSELVLVDVRTPEERRISVIPGAITKDDFEENPAKYQNR---TVVVYCTIGYRSGQYTRQLRQQG---LDAYNLSEGILGWAHIDGR---------------LVNDQQQTTRQVHVYSRPW 159          
BLAST of NO30G00390 vs. NCBI_GenBank
Match: WP_006171147.1 (hypothetical protein [Synechococcus sp. WH 5701] >EAQ74878.1 probable MPT-synthase sulfurylase [Synechococcus sp. WH 5701])

HSP 1 Score: 84.3 bits (207), Expect = 5.000e-13
Identity = 61/147 (41.50%), Postives = 78/147 (53.06%), Query Frame = 0
Query:   36 PPISATEVRSLP-SDAVVLVDVRTPEERAVSMLPAAITQEEFERRQEEYRARPEITVVPYCTMGRRSGIYARKLVKKGGFEKEKVRNGEG-ILLWTHEGGREGRKEGGRDAMETALLVGPDGRSTRRVHAYGQAWAAYAAEGFEVVL 181
            P IS  E  S P   + VLVDVR PEE+ VSMLP AITQ++FE   + YR    + VVPYCT+G RSG+YAR+L  +G     +VRN  G  L W H G                      GR ++R+H +G  W    + G+E VL
Sbjct:   50 PEISVAEWLSRPRGQSAVLVDVREPEEQRVSMLPGAITQQQFELSGDRYRG---VLVVPYCTIGLRSGLYARELQAQG----YRVRNLAGSALAWAHAGRP----------------FSSAGRPSQRMHVFGADWNLLPS-GYEGVL 172          
BLAST of NO30G00390 vs. NCBI_GenBank
Match: WP_087068473.1 (MPT-synthase sulfurylase [Cyanobium sp. NIES-981] >SBO44123.1 Rhodanese-like domain protein [Cyanobium sp. NIES-981])

HSP 1 Score: 84.0 bits (206), Expect = 6.600e-13
Identity = 62/159 (38.99%), Postives = 86/159 (54.09%), Query Frame = 0
Query:   13 LRRVHADAKVAVKSYTDSFPDLAPPISATEV--RSLPSDAVVLVDVRTPEERAVSMLPAAITQEEFERRQEEYRARPEITVVPYCTMGRRSGIYARKLVKKGGFEKEKVRNGEGILL-WTHEGGREGRKEGGRDAMETALLVGPDGRSTRRVHAYGQAW 169
            + R++AD + A       F D+ P I+  E+  ++L    +VLVDVR   ERAVS+LP AI+ E FER++E YR+     VVPYCT+G RSG+Y R+L+++G     + RN  G LL W H G                L +   GR TRR H +   W
Sbjct:   30 VERLYADFRRA------RFADV-PDITVAELQRQTLQHPQLVLVDVRELRERAVSILPGAISVEVFERQKERYRSS---LVVPYCTIGLRSGLYGRRLIREG----FRTRNLAGSLLAWAHAG----------------LPLEHQGRPTRRAHVFSPGW 158          
BLAST of NO30G00390 vs. NCBI_GenBank
Match: XP_003057826.1 (bile Acid:Na+ symporter family [Micromonas pusilla CCMP1545] >EEH57777.1 bile Acid:Na+ symporter family [Micromonas pusilla CCMP1545])

HSP 1 Score: 83.2 bits (204), Expect = 1.100e-12
Identity = 62/183 (33.88%), Postives = 95/183 (51.91%), Query Frame = 0
Query:   35 APPISATEVRS-LP---------SDAVVLVDVRTPEERAVSMLPAAITQEEFERRQEEYRARPEITVVPYCTMGRRSGIYARKLVKKGGFEKEKVRNGEGILLWTHEGGREGRKEGGRDAMETALLVGPDGRSTRRVHAYGQAWAAYAAEGFEVVLFPSSRKNPLRWLQGAWEHLADKRRRQR 208
            AP IS  +++S LP             V+VDVRT +ERAVSM+  A+T+ +FE  Q    +R ++ V+ YCT+G RS  Y  KL +K G++   +R    IL WTH GG          A+ET       G  TRRVH +G+ W   A+  ++   F    K P+  L     ++++K ++++
Sbjct:  488 APDISVAQLKSELPFMRRGGKGNLKPFVIVDVRTEQERAVSMIAGAVTKSKFEANQRALDSREDVKVIAYCTIGYRSAQYVEKL-RKDGYDAYNLRG--SILAWTHAGG----------ALETR------GEETRRVHTFGKTW-DLASSAYDTTYF----KKPM--LSFVTSYISEKFKKRK 644          
BLAST of NO30G00390 vs. NCBI_GenBank
Match: GAQ89088.1 (hypothetical protein KFL_004860060 [Klebsormidium nitens])

HSP 1 Score: 83.2 bits (204), Expect = 1.100e-12
Identity = 53/137 (38.69%), Postives = 75/137 (54.74%), Query Frame = 0
Query:   36 PPISATEVRSLPSDAVVLVDVRTPEERAVSMLPAAITQEEFERRQEEYRARPEITVVPYCTMGRRSGIYARKLVKKGGFEKEKVRNGEG-ILLWTHEGGREGRKEGGRDAMETALLVGPDGRSTRRVHAYGQAWAAY 172
            P IS  E++ LP D+ +LVDVR+  ER VSM+P +IT+EEFE+R +E +   +  +V YC +G RSG Y ++L+        KVRN  G I+ W H  G                LV  +G+ST ++H  G  W  Y
Sbjct:   41 PEISGAELKDLPRDSYILVDVRSEAERNVSMIPGSITKEEFEKRFDELK---DQDIVVYCAIGGRSGTYCKQLL--ATHPGLKVRNYAGSIIDWLHVPG---------------ALVDHEGKSTNKIHPGGSTWKQY 157          
BLAST of NO30G00390 vs. NCBI_GenBank
Match: WP_094584947.1 (MPT-synthase sulfurylase [Synechococcus sp. BO 8801])

HSP 1 Score: 82.8 bits (203), Expect = 1.500e-12
Identity = 59/135 (43.70%), Postives = 70/135 (51.85%), Query Frame = 0
Query:   36 PPISATEVRSLPSD-AVVLVDVRTPEERAVSMLPAAITQEEFERRQEEYRARPEITVVPYCTMGRRSGIYARKLVKKGGFEKEKVRNGEG-ILLWTHEGGREGRKEGGRDAMETALLVGPDGRSTRRVHAYGQAW 169
            P IS  E  + P D   VLVDVR P ER VSMLP AIT+E+FER    YR+     VVPYCT+G RSG+Y R+L  +G      VRN  G  L W H G                L     G++TRRVH +   W
Sbjct:   70 PEISVAEWLARPKDRPAVLVDVREPHERRVSMLPGAITKEDFERDSARYRS---WLVVPYCTIGLRSGLYTRELRGRG----FAVRNLAGSALAWAHAG----------------LPFEAGGKATRRVHVFNGDW 181          
The following BLAST results are available for this feature:
BLAST of NO30G00390 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
WP_006909319.18.300e-1645.80MPT-synthase sulfurylase [Cyanobium sp. PCC 7001] ... [more]
WP_090333996.13.100e-1544.44rhodanese-like domain-containing protein [Nitrosom... [more]
CBN76442.14.500e-1437.10bile Acid:Na+ symporter family [Ectocarpus silicul... [more]
XP_005784172.12.900e-1337.57hypothetical protein EMIHUDRAFT_231359 [Emiliania ... [more]
WP_090656902.13.800e-1339.74rhodanese-like domain-containing protein [Nitrosom... [more]
WP_006171147.15.000e-1341.50hypothetical protein [Synechococcus sp. WH 5701] >... [more]
WP_087068473.16.600e-1338.99MPT-synthase sulfurylase [Cyanobium sp. NIES-981] ... [more]
XP_003057826.11.100e-1233.88bile Acid:Na+ symporter family [Micromonas pusilla... [more]
GAQ89088.11.100e-1238.69hypothetical protein KFL_004860060 [Klebsormidium ... [more]
WP_094584947.11.500e-1243.70MPT-synthase sulfurylase [Synechococcus sp. BO 880... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR051ncniR051Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO30G00390.1NO30G00390.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|658794gene_9281Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO30G00390.1NO30G00390.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO30G00390 ID=NO30G00390|Name=NO30G00390|organism=Nannochloropsis oceanica|type=gene|length=2027bp
GTTACGACTGCTCTCCCTGCCTGTGGTCATGTGCGTGGTGAAGTGGTGGA
AGGGTGTGTTCGCGGGCGTTGTTGAGACGTCGCCGAGGTTGATGCAGCAC
AGCGCAGTGCAAGCTTCGCTCTATTCGCTGTCGGCGAGCTGCTCACGTCA
AAAGCAGCAGTCAGTTTACGAACTCACACGCATACACGAAAACAACAAGG
ACAACACGGAAGAGAACAAGAAATCTGAGTACAGGACCATCCTGCGTATC
GGGTCCTCCTCCAACAAGACGAAATAAATCGACAACACCTTCACCGACTC
CCCCAAGACCTCCCTACTAACGTGCACGGGCCAGGCCAGTACAATTACGA
TCATGACAACGCCAAGGCCTCACACGAGCGTCAACCCGCTTCGAAGAGTA
CATGCAGATGCCAAGGTAGCGGTCAAAAGCTACACAGgtccgcgcacaac
cccacgtcgttcctccccatccttccctcgatatgttcctcttctcctca
ccatgccgctactcccccgcaatgctgacagATAGCTTTCCGGATCTGGC
CCCACCCATTTCTGCCACTGAAGTCCGATCCCTTCCTTCCGACGCCGTGG
TTTTAGgtgagaaaccaatgggtcaatcatcgtggtgaattccacttgca
ctacctctcctttctcaccctctttctgcaaccaaatagTCGATGTCCGC
ACGCCCGAAGAGCGAGCTGTGTCAATGCTGCCAGCAGCCATAACCCAAGA
AGAGTTTGAGAGACGACAAGAAGAATACAGgtaaaacaatcgagggtaaa
aggataaaggaagaagggacagacagcgtgaaggtatccgttacatccgt
tgcggtcgtttaggagactttcgcgtgcaccattgaccacaaactagggt
cttatggacgtcttgatcggttctcgaatcttacgccattcgtgtaccct
gtacatgtaatgcgcacagGGCAAGGCCTGAAATCACGGTAGTCCCGTAC
TGCACCATGGGGCGGCGCTCCGGGATATACGCGAGAAAGCTGGTGAAAAA
GGGAGGCTTCGAGAAGGAGAAGgtgaggaaagaatcaggagggaaagagg
cgaagagaggattgtgacaagaggagacgaggaggaagtcggtgattgcc
tctcgtgcgacacgcctagcacccgggcaaggtagggaagagatagaacc
tccatccgtctccccacacccgtggctgacggtccgcccgttacattgta
cattcctcaatattgtcccactgcccacaatcatcataaacacaagGTGC
GAAACGGGGAAGGCATCCTCCTCTGGACGCATGAGGGGGGGAGGGAGGGA
AGGAAGGAGGGAGGGAGGGACGCGATGGAGACTGCGCTGCTGGTAGGCCC
GGACGGGCGAAGCACCCGCCGTGTGCATGCCTACGGGCAGgtaggtaacg
cgaagaagaggaggagggataaagaagaggcgaagtgaactcagtcatgg
ctctaatgcccctccttcccttcctccctccctccttgctcaccttcccc
ttctcaggctgactgatgttcctcctccttacccttccctccctccctct
tttcctcttgtccttctcagGCCTGGGCGGCGTATGCGGCTGAGGGCTTC
GAGGTGGTCCTTTTCCCCAGTTCGCGCAAAAACCCGCTCCGGTGGCTGCA
AGGCGCCTGGGAGCACTTGGCAGATAAGAGGAGAAGGCAGAGGGAGACGT
TGATGAAGGAGGAGGATAAAGGGGAAGACGGATGAGCGTGTTTGCGGGAG
ATGGCAAGCTCAGACACGAGACTAGGGTTCATTGGGAGTAGTTCCTGACC
GAGGGCGTGAGGAGGTTGGCCGGTCAAAGCGGTCGATAAATGTATCAAGT
GGCTCAACCAGGGTCGGATTTATTTATGAAGGGGCTCAACCAGAGTCGGT
GTTGATCTCACGAGAGGGTCAACCACTCAGTGAATGAATCGCGGATGCGT
CAAAGGGTGACCGAAAGGGCGCATTCC
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protein sequence of NO30G00390.1

>NO30G00390.1-protein ID=NO30G00390.1-protein|Name=NO30G00390.1|organism=Nannochloropsis oceanica|type=polypeptide|length=221bp
MTTPRPHTSVNPLRRVHADAKVAVKSYTDSFPDLAPPISATEVRSLPSDA
VVLVDVRTPEERAVSMLPAAITQEEFERRQEEYRARPEITVVPYCTMGRR
SGIYARKLVKKGGFEKEKVRNGEGILLWTHEGGREGRKEGGRDAMETALL
VGPDGRSTRRVHAYGQAWAAYAAEGFEVVLFPSSRKNPLRWLQGAWEHLA
DKRRRQRETLMKEEDKGEDG*
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Synonyms
Publications