NO30G00320, NO30G00320 (gene) Nannochloropsis oceanica

Overview
NameNO30G00320
Unique NameNO30G00320
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1745
Alignment locationchr30:130570..132314 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr30genomechr30:130570..132314 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR026570CCDC86
IPR005579Cgr1-like
Homology
[Close]
BLAST of NO30G00320 vs. NCBI_GenBank
Match: XP_009833217.1 (hypothetical protein H257_08847 [Aphanomyces astaci] >ETV77430.1 hypothetical protein H257_08847 [Aphanomyces astaci])

HSP 1 Score: 71.2 bits (173), Expect = 3.700e-9
Identity = 51/123 (41.46%), Postives = 68/123 (55.28%), Query Frame = 0 
Query:   36 KGRSVSGRFWRSGNNKRASTLITKTNPKTLSTSWEQKLAIREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEFKTSTYQMITKTEKIKAMSKKQLRQIKKTQMNRMGQVELVSPW 159
            +G  VSGR W+     + S +  K   KTLST+W++K+A +                            XXXXXX    EFK ST Q+I KT K+K+MSKKQLR IKKT+MN+ G++ELVS +
Sbjct:   14 RGVPVSGRSWKKTQRSKNSMMTYKAT-KTLSTTWDEKMAAKSKKKEMKDLEHEIANRKKQEKVDKRVARXXXXXXRIANEFKASTLQVIKKTHKLKSMSKKQLRNIKKTRMNKNGEIELVSAY 135
[Close]
BLAST of NO30G00320 vs. NCBI_GenBank
Match: XP_008874845.1 (hypothetical protein H310_10283 [Aphanomyces invadans] >ETV96582.1 hypothetical protein H310_10283 [Aphanomyces invadans])

HSP 1 Score: 68.2 bits (165), Expect = 3.100e-8
Identity = 51/120 (42.50%), Postives = 66/120 (55.00%), Query Frame = 0 
Query:   36 KGRSVSGRFWRSGNNKRASTLITKTNPKTLSTSWEQKLAIREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEFKTSTYQMITKTEKIKAMSKKQLRQIKKTQMNRMGQVELV 156
            +G  VSGR W+     + S +  K   KTLST+W++K+A +                          XXXXXXX     EFK ST Q+I KT K+K MSKKQLR IKKT+MN+ G++ELV
Sbjct:   14 RGVPVSGRSWKKPQRAKNSMMTFKAT-KTLSTTWDEKMAAKAKKKEMKELEHEIANRKKQEKIDKRVXXXXXXXRRIANEFKASTLQVIKKTHKLKTMSKKQLRNIKKTRMNKNGEIELV 132
[Close]
BLAST of NO30G00320 vs. NCBI_GenBank
Match: XP_008606656.1 (hypothetical protein SDRG_02830 [Saprolegnia diclina VS20] >EQC40182.1 hypothetical protein SDRG_02830 [Saprolegnia diclina VS20])

HSP 1 Score: 65.9 bits (159), Expect = 1.500e-7
Identity = 62/120 (51.67%), Postives = 79/120 (65.83%), Query Frame = 0 
Query:   36 KGRSVSGRFWRSGNNKRASTLITKTNPKTLSTSWEQKLAIREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEFKTSTYQMITKTEKIKAMSKKQLRQIKKTQMNRMGQVELV 156
            +G+ VS R W+    +R S +  K   KTLST+W++K+A++               XXXXXXXXXXXXXXXXXXX    E K+ST Q I+KT K+K MSKKQLRQI+KT+MN+ G VE V
Sbjct:   13 RGQPVSNRPWKKTQTQRKSMMTYKAT-KTLSTTWDEKMAMKAKKKEMKDLEHEIAAXXXXXXXXXXXXXXXXXXXRMANEMKSSTVQQISKTHKLKTMSKKQLRQIRKTRMNKNGVVEYV 131
[Close]
BLAST of NO30G00320 vs. NCBI_GenBank
Match: XP_012204963.1 (hypothetical protein SPRG_10448 [Saprolegnia parasitica CBS 223.65] >KDO24370.1 hypothetical protein SPRG_10448 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 65.9 bits (159), Expect = 1.500e-7
Identity = 62/120 (51.67%), Postives = 79/120 (65.83%), Query Frame = 0 
Query:   36 KGRSVSGRFWRSGNNKRASTLITKTNPKTLSTSWEQKLAIREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEFKTSTYQMITKTEKIKAMSKKQLRQIKKTQMNRMGQVELV 156
            +G+ VS R W+    +R S +  K   KTLST+W++K+A++               XXXXXXXXXXXXXXXXXXX    E K+ST Q I+KT K+K MSKKQLRQI+KT+MN+ G VE V
Sbjct:   12 RGQPVSNRPWKKTQTQRKSMMTYKAT-KTLSTTWDEKMAMKAKKKEMKDLEHEIAAXXXXXXXXXXXXXXXXXXXRMANEMKSSTVQQISKTHKLKTMSKKQLRQIRKTRMNKNGVVEYV 130
[Close]
BLAST of NO30G00320 vs. NCBI_GenBank
Match: OQS04044.1 (hypothetical protein THRCLA_20991 [Thraustotheca clavata])

HSP 1 Score: 63.5 bits (153), Expect = 7.700e-7
Identity = 65/120 (54.17%), Postives = 82/120 (68.33%), Query Frame = 0 
Query:   36 KGRSVSGRFWRSGNNKRASTLITKTNPKTLSTSWEQKLAIREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEFKTSTYQMITKTEKIKAMSKKQLRQIKKTQMNRMGQVELV 156
            +G+ VSGR W+    +R S +  K   KTLST+WE+K+A++               XXXXXXXXXXXXXXXXXXXXXXX  K++T Q I+KT K+K MSKKQLR I+KT+MN+ G VE V
Sbjct:   11 RGKPVSGRPWKKTQTQRKSMMTYKAT-KTLSTTWEEKMAMKARKKEMKDLEHEIAAXXXXXXXXXXXXXXXXXXXXXXXXMKSATVQHISKTHKLKTMSKKQLRNIRKTRMNKNGVVEYV 129
The following BLAST results are available for this feature:
BLAST of NO30G00320 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 5
Match NameE-valueIdentityDescription
XP_009833217.13.700e-941.46hypothetical protein H257_08847 [Aphanomyces astac... [more]
XP_008874845.13.100e-842.50hypothetical protein H310_10283 [Aphanomyces invad... [more]
XP_008606656.11.500e-751.67hypothetical protein SDRG_02830 [Saprolegnia dicli... [more]
XP_012204963.11.500e-751.67hypothetical protein SPRG_10448 [Saprolegnia paras... [more]
OQS04044.17.700e-754.17hypothetical protein THRCLA_20991 [Thraustotheca c... [more]
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Relationships

The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO30G00320.1NO30G00320.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO30G00320.1NO30G00320.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO30G00320 ID=NO30G00320|Name=NO30G00320|organism=Nannochloropsis oceanica|type=gene|length=1745bp
ATGGTAGCGGCTCCCAAGCCTGCAGCAGCAGCAGCAGCAGCAGCAGCACC
AGTAACGGTAACACCATCAACAGCTTCAGCAGTAGTGGCAGGGAATGGCG
AGATTAAGGGTCGGTCGGTCAGTGGCCGGTTTTGGAGGAGTGGGAACAAC
AAACGgtgcgtctcgagagttaccgggaaggagtgggaaggatgcgtgcg
gtgggagagagatatatttttgttaattggaatcgagttgagtgaaaagg
agtggggaacagagagcaagaaaggggaggagagaggaaaggagactaag
tctcaatgaaaagggaatgcaggactaatgattgtgatggcctcactcat
cccctccctcccttctcccctcccttctcccctccttccctccctccctt
tcttccttcagAGCCTCCACCCTCATCACCAAGACCAACCCCAAAACTCT
CTCGACCTCCTGGGAACAAAAACTGGCCATCCGAGAACGAGCCAAgttcg
taccctccctccctccctccctccctcagtccctccttccctccctctct
tctctttccacctcaccaatagctgatcctcatgcttaaacctctccttt
ctttcctttccccctccctccaagGGCCGTAAAGGAGCGCCAGCAAGAGA
TGCGTGATGAACGAAGGGCAGATATCGATgtatgtaccccttccctccct
ccctccctccctccctccctccctcctccctgtcccttccttcactttct
ccctccctaaaacccactcacacttctccctccatctctccctccctccc
tccctccctttcttcctccccttcctaaagAAAAAGAAGCTCGAGCGCGA
GGAGCGGCTGAAGAGGAGGATGGAAAATGAGTTCAAGACTAGCACGTACC
AGATGgtgagggaggaagggaggaagggagggaggagggaagggatgaat
cgggtcatcgtactttttctgtcgtttgagcgtagatgaacagggaggga
ggggagagagggagggagggagggagggagggagggagggagggagggag
ggagggagggagggagggaccaatgagcgggaggatggaaagcgtcttac
caacacaaagaaacactcaattttaatctttttccctccctctctccctt
ccttagATCACCAAGACCGAGAAGATTAAGGCCATGAGCAAGAAGCAGCT
TCGACAGATCAAGAAGACTCAGgtgaagaagggagggagggaagaggaga
gggaagaaaagagggagggagggagggagggagggaggggccgctcagga
taaagaggggccaagaaatcaagaaacaagagacggaaaaagaggggggg
gaaatcgactcacctgctttcccttcccttcttctgtccctccctccctt
cctccctccctccctccctctgtagATGAACCGCATGGGCCAAGTGGAGC
TCGTTTCGCCGTGGCAAGATCCGCGGAAGGTCGGGAGGGACGGGAAGCCC
GTGCCCAAGGAGTGGGTAAAACGAGGAGGAAAGAAGAAGCTCTAAGCTAC
CTCGCACCCGCCCTTGCTCCCTGCTCGGGTGACGTGTGTGCCCTTTCGTT
CTTCCCTCCCTCCCTCCCTCCCTCGCCTGCCGAAAAAAGGGGGGGAAGTC
GAACTCCTACGTAAGAGAATGAGACGGCGGGAAGCACATGTGAGAGCTAG
AAGAAAGAAACGGAAAGCAAAGCAAAGAAAATTAAATTTAAACGA
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protein sequence of NO30G00320.1

>NO30G00320.1-protein ID=NO30G00320.1-protein|Name=NO30G00320.1|organism=Nannochloropsis oceanica|type=polypeptide|length=185bp
MVAAPKPAAAAAAAAAPVTVTPSTASAVVAGNGEIKGRSVSGRFWRSGNN
KRASTLITKTNPKTLSTSWEQKLAIRERAKAVKERQQEMRDERRADIDKK
KLEREERLKRRMENEFKTSTYQMITKTEKIKAMSKKQLRQIKKTQMNRMG
QVELVSPWQDPRKVGRDGKPVPKEWVKRGGKKKL*
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Synonyms
Publications