NO30G00280, NO30G00280 (gene) Nannochloropsis oceanica

Overview
NameNO30G00280
Unique NameNO30G00280
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2594
Alignment locationchr30:116205..118798 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr30genomechr30:116205..118798 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: INTERPRO
TermDefinition
IPR035965PAS-like_dom_sf
IPR013767PAS_fold
IPR000014PAS
Homology
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BLAST of NO30G00280 vs. NCBI_GenBank
Match: EWM23721.1 (conserved unknown protein [Nannochloropsis gaditana])

HSP 1 Score: 89.4 bits (220), Expect = 3.400e-14
Identity = 55/134 (41.04%), Postives = 73/134 (54.48%), Query Frame = 0 
Query:  301 RRATKEDLSGLTAEEKVERRKIRARMYNRLSRYRCNRLHGDLHKDVSRMEMYKNIVEDAPDMICVISPDIQSQVLYINKTARCILHAEPAQLVGSSFWNIVHPEDKMALFRALTAVSAFTSVGKVERLRCRVVT 435
            +RA + DLSG T  EK ERRK RARMY+   R R N     L + V  + +YK +V++AP++  V+S D Q++VLY N          P   VG S W +VH EDK  +  A    SA     +V R RCR+ T
Sbjct:  278 KRARRTDLSGYTPGEKQERRKERARMYSAQVRERQNAELHALRQQVQALSVYKLMVDEAPEIFAVLSADSQAKVLYANAAFARFFLCHPESCVGRSVWEVVHREDKETVMGAF--ASAVMEKEEVGRARCRLGT 409
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BLAST of NO30G00280 vs. NCBI_GenBank
Match: EWM23655.1 (pas pac sensor hybrid histidine kinase [Nannochloropsis gaditana])

HSP 1 Score: 76.3 bits (186), Expect = 3.000e-10
Identity = 52/182 (28.57%), Postives = 92/182 (50.55%), Query Frame = 0 
Query:  294 LPSTEKQRRATKEDLSGLTAEEKVERRKIRARMYNRLSRYRCNRLHGDLHKDVSRMEMYKNIVEDAPDMICVISPDIQSQVLYINKTARCILHAEP-----AQLVGSSFWNIVHPEDKMALFRALTAV------------SAFTSVGKVERLRCRVVTDNPGIYVSVRMTLANGMQGIVCVM 459
            L +  K+RRA + D S LT EE+++ +K RAR Y+ ++R R ++    L  +V R+++YK +VE APD + ++S D Q ++L+ NK +  +    P       L G   W  +   D++A+F A+  V            + +   G V +   R     P   + V +TL +  QG++ ++
Sbjct:  319 LTTLGKKRRAPRMDFSKLTPEEQIQWKKARARKYSAMARERQSKKEEALRAEVGRLQVYKTLVEAAPDAMLLLSNDAQGRILFANKESEKLFGFIPKGGAEKPLPGRCLWEWLDVTDRVAIFAAIGKVVLCKHLVRAVPCTVWLPSGSVPKHDAR----GPQQSLKVLITLRSSAQGLILII 496
The following BLAST results are available for this feature:
BLAST of NO30G00280 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM23721.13.400e-1441.04conserved unknown protein [Nannochloropsis gaditan... [more]
EWM23655.13.000e-1028.57pas pac sensor hybrid histidine kinase [Nannochlor... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR074ncniR074Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO30G00280.1NO30G00280.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO30G00280.1NO30G00280.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO30G00280 ID=NO30G00280|Name=NO30G00280|organism=Nannochloropsis oceanica|type=gene|length=2594bp
ATGGAGATGATCTGGTCCGTGAGCCCTCTGGGAGAATACGTGGGAATCCA
Ggtagcttcccccccttccctccctcctgccctccctccctcccttcctc
aatcaattttcccccgcagtcatattgagcgagagagatggataaggccc
gcttcctggccgccatgtctcaccctttttcccacccttcctccctctct
ccctccctccctctttccctcgttccccagGTGGCCGGGAACGGCCAGAC
CTCGCTCTCCATCGGCGTCATTTCCGGCAAGCCCCGGATGGTGGACACGC
CCTACCACCAAGTCATGCTCCTCTCGGACgtaaaatgtgtgcctgctgtg
ccgcccccctccttctctttatccctccatctctccctctctgtctttga
gtcctcgtaagggcttcacgcgtctatttcaataatagattacgtcatcc
atcgcacaatgtcggcctttgattccgacaaaaaagagataaatcggagc
actctccattccctggagatatttaccgagcaaacagcaggccctcagct
agcagcaggccatcacggtgtacaatccggcgcagcagattgatttcctt
gctgccacatgtttttgcttgctttcgctgtgcacgtatggctggctggc
tgaccacagacagacaggagcaccacgtgtgtccatatgtcgtgcctgca
ctccgccgccgccgcccgctttctgtcattagccctcttagaaccatctc
ccagctcccaactcaaatccaactgcccatacatgcagtgtcacaaatca
cagTCTATCCGGGCTTCTGCTGGCCCAATGACATTCGCTTATACGTGTTC
GTATTCTCGAGAGGATATCGGGGCTTTTGGCCCCACTGCTGAGCTGCGGC
GGGACCAAAGCCAGCGCGACTGCCTCCACGGAATGAAGGATTCTGTCGAC
TTAGACGAGAAAAAGGCACACGGCGGCGCGGCAGCCCTGTGCAGCCTAGC
AACACTCTCTGCCGCTGCTGACCCGCTTCTCGTCTCCACGCCGTGTTACC
CCTCGTCTTGGGCCTCTTCTCTCGTAGCAGCGAACCACGgtacgtttttg
gaaggcgattggtgcccattattccccaagttgcctcctctatgcctcta
tgtatacattttcctgatcaactacatacatcatcccccgacttgtacgt
ggccttgtacatggaagcgtacgtgtacgacacactccgcatgatgtttc
tttttcatcttttcatttttcatcttcccgtcgccattatgtgtttggcc
accagcattctgacaaatgcttctacgacattgtaagcaaaaagaatata
tacacaggtatatcccgccccgagtcacacaaaagcatctacatgcgcac
cagctacatacaaggcatctattcgtaggcgcgcacgctcacttcaacat
acatacataccccccccctcacacacaaccttagAACTTCAGAAGCAGAT
GGTCGACAAATCATTGCAATCCTTTCTGACCCAGTACCAGCAACAGTTTC
ACCCGTCGGCCATTCATCAGCATGCTATCCTGGATGATAAGATGACCAAG
GTACTCTCCCAGGCCTCGCCGTCTTTTCTAGCACAGCAGCACCACCAGCT
CCAGCAGTATTTCAACCGAAGTCACCTACCACTGCAGCTTCATTACTTCC
TAAAATGCCAAATGCAGCCAATTGAAAAGCAGCATATGATGGCGTCGACC
AAGTGCTTTTCTATGAACGAGTTACCGCTCACCACCGAGCACGTGGAAGC
CAAGATCTACCCACCGATTGCACCGCTGAGCGAGACCCCTCTGCTGCTGC
AGGAGATTCGAGCTGGTGTGATGGGTGTTTCGGTGGGACGGCTGCCTGGC
AGATACTCCAAGATCATGGGAAAGTACCTTCCGgtaagagaaaagagaga
tatgagcatggtgcttgcgtattttatcaacctttgttgggaactcactc
tttgtttgtctccattcactcgttctttatctacatcagAGCACAGAGAA
GCAGCGACGAGCAACGAAAGAGGACTTGTCGGGATTAACGGCAGAGGAGA
AGGTGGAGCGACGCAAGATTCGCGCACGCATGTACAATCGCTTGTCTCGC
TACCGGTGCAACCGGTTGCATGGTGACCTGCACAAGGACGTGAGTCGCAT
GGAAATGTACAAGAATATTGTTGAAGATGCGCCGGACATGATATGTGTCA
TCTCCCCCGACATTCAGAGCCAGGTGCTGTACATCAACAAGACCGCTCGA
TGCATCCTTCACGCTGAGCCCGCGCAGCTGGTGGGGTCCAGCTTCTGGAA
TATTGTCCACCCGGAAGATAAGATGGCGCTGTTCAGGGCACTCACTGCCG
TCTCCGCCTTCACGTCGGTCGGGAAAGTGGAACGGCTACGCTGTCGTGTT
GTCACCGACAACCCCGGTATCTATGTATCTGTCCGGATGACGCTCGCGAA
CGGGATGCAGGGCATTGTCTGCGTAATGTGCCACGAAGACCCTCTGTCTA
CCGTTTCGCGCGTGTCGCCTGATGGACGAGCGTGTCTTATGTAG
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protein sequence of NO30G00280.1

>NO30G00280.1-protein ID=NO30G00280.1-protein|Name=NO30G00280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=480bp
MEMIWSVSPLGEYVGIQVAGNGQTSLSIGVISGKPRMVDTPYHQVMLLSD
SIRASAGPMTFAYTCSYSREDIGAFGPTAELRRDQSQRDCLHGMKDSVDL
DEKKAHGGAAALCSLATLSAAADPLLVSTPCYPSSWASSLVAANHELQKQ
MVDKSLQSFLTQYQQQFHPSAIHQHAILDDKMTKVLSQASPSFLAQQHHQ
LQQYFNRSHLPLQLHYFLKCQMQPIEKQHMMASTKCFSMNELPLTTEHVE
AKIYPPIAPLSETPLLLQEIRAGVMGVSVGRLPGRYSKIMGKYLPSTEKQ
RRATKEDLSGLTAEEKVERRKIRARMYNRLSRYRCNRLHGDLHKDVSRME
MYKNIVEDAPDMICVISPDIQSQVLYINKTARCILHAEPAQLVGSSFWNI
VHPEDKMALFRALTAVSAFTSVGKVERLRCRVVTDNPGIYVSVRMTLANG
MQGIVCVMCHEDPLSTVSRVSPDGRACLM*
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Synonyms
Publications