NO30G00130.1, NO30G00130.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO30G00130.1
Unique NameNO30G00130.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2247
Alignment locationchr30:64135..66381 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr30genomechr30:64135..66381 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO30G00130.1 vs.
Match: EWM20240.1 (hypothetical protein Naga_100380g2 [Nannochloropsis gaditana])

HSP 1 Score: 338.6 bits (867), Expect = 2.900e-89
Identity = 163/340 (47.94%), Postives = 226/340 (66.47%), Query Frame = 0 
Query:   86 KRGLAMAMQLLDKDL-PWDLRDTILKTLPSYTRKLKGQTKVLREEKSTDADWWFATPGFLTSDGTDRTIIRVVNYYIDLDGSYYVSND-KIKTKMLVAETNEWISVTESPAFAVVAAQEKLHYPDVYETGLEDTRFL----VHGKNAPIYTLSCSFEYTRMSGRINQVLSILDPKTWTMTIQDVIRGPNPEHHEKNWVFADGLQNIVYGWYPSIQIGAIDLAASELVIHTSIKSPKSFSSMRGSTNGVLHENEWWFVTHAMLDRPGQLRYYSHRIVVLDEHLKSITRYSLPFTFEQDADTEYCLGFKADDAGVTFGYSVRDRTSRTLHVDWSEVLLLFDD 420
            + GL++ M LL+  L P +L   +   +P YT+ L+G   +LR EK+ +  W F+TP FL S      ++R VNY+   DGSY+VS D ++KT++LV  ++++I + ES  F     +   H+P+ Y  GLEDTRF         ++ IYTLS S EY+R +  +NQ+L +++P TWT+TIQD+IRGP  +  EKNWVF +G++++VY WYP I+IG ID    E VI  SI+SP SF +MRGSTNG+LH NEWWFVTH +  R G+ R Y+HRIV+L+  +  + RYSLPFTF  + D EYCLG KAD+ G+TFGYSVRD++S TL   W E+   FDD
Sbjct:  211 RHGLSLCMNLLENPLLPSNLASIVYNNIPVYTQSLRGHRTLLRAEKNENDPWRFSTPTFLDS----HVLLREVNYFAAEDGSYHVSQDSQVKTRVLVDGSDQYIKIQESEDFRKRITERGWHHPEAYVQGLEDTRFKSTFDYKANSSVIYTLSASMEYSRSANHMNQLLGVIEPDTWTLTIQDIIRGPFGDRTEKNWVFVNGIESLVYEWYPFIRIGHIDRDKGEFVIDRSIQSPLSFLNMRGSTNGILHRNEWWFVTHMVKHRSGRRRIYTHRIVILNFEMSQVLRYSLPFTFNSETDIEYCLGLKADNEGLTFGYSVRDKSSWTLQCSWGEIEQYFDD 546
The following BLAST results are available for this feature:
BLAST of NO30G00130.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20240.12.900e-8947.94hypothetical protein Naga_100380g2 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO30G00130NO30G00130Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO30G00130.1NO30G00130.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO30G00130.1.cds1NO30G00130.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO30G00130.1 ID=NO30G00130.1|Name=NO30G00130.1|organism=Nannochloropsis oceanica|type=mRNA|length=2247bp
CTATCGAGAGCATACAAATAATTTGAAATACAAGGGCCTACCCACCATCC
TAATTCACAGAGCGGACGATATTCCCGATCTGGTACAAATGATAAGTCAG
TGAAAAACGTGGGCGAAGAGACGCACTACCCGATCACCCTCATCGACTCA
TGCTTGGATGTGCTGAAGGGGGCAAAGTAAGACCAAACCCCAAGCCCTTA
AGCGAGTAAAGCAGCCGTGCTGCATGATGGGGAATTTGTTGTGAGCCCCC
CGCATGCCGGTTTGGGGATTTTAGCATTCTATGAAAGGACATGGAGGTGC
TGTGCTGTTTGTGCTGCGATGCGTAGAGCGCTTGGCATGCCAGAGGACGC
GTCTCGCCGGTCGCGCCCACAGATTGCTCATTGCATCAGCGCGACGAAAA
GTCCAGCGAGATGTGCTCCGGCGTAGCGACCGACTGCGAAGTCCACCATC
TAGACTTGTACCCCGTTAGAATGGCAAGAGGTTCCCCGGTACTGATCACT
CTCCCCTCCTGCATATGCCCACAGCATCTTCTCAAATTACACTCTACGCC
GCGCTGTACCACCCGCCTCATTATCACTTATTATCATCGTCAACCTCCTA
TCAAATAGATCGGTTCCTGTTCCAAGAGGTCTATAATCGGCGCTTATAAG
GCAAAGTTAGAACTCAAGGAGCGGTGAGCCGCAACGGGACATCGGACGCC
AAGGCCCAAAGGTTGTCCTCGTTTGGTGAAACCACTGCCATCGACAATAT
TGTTGCCCTACAAAGTCACACGTGAGAGCTTAGTGATGACACCTTCTATA
CGGTTTTCTCTCTTTCAAACACTCGCACTGATTGTATTACATACGCTGTT
TTTCCTCAGCTGGTTGAATGGCACGCATGTCCCTCCCACCAAATCGTATG
AGGGAACACCTTCATCAATGGTCATATCATCCGAGACTCAAGAAAAGGCT
CCAGCATACTATGAATTTGGCCACAATGAGGAAATTAACACAATTCAAGC
ATTCTTGGAGGCGGAAGAATCGTACACGAACAAGCGCTTAAAGCGTGGAT
TGGCCATGGCCATGCAGCTCCTCGACAAGGACCTGCCTTGGGATCTAAGA
GACACAATCCTTAAAACTCTTCCTTCTTATACTAGAAAGTTGAAGGGGCA
AACAAAGGTGCTCCGGGAGGAAAAGTCCACTGATGCTGACTGGTGGTTTG
CAACGCCAGGCTTCTTGACATCCGATGGTACTGATCGTACCATAATCCGA
GTTGTCAATTATTACATAGACCTCGATGGATCCTACTATGTCTCGAATGA
CAAAATTAAAACAAAGATGTTGGTCGCGGAGACGAATGAATGGATCAGCG
TAACGGAATCGCCAGCCTTTGCAGTCGTTGCTGCGCAAGAAAAATTACAT
TACCCCGACGTGTACGAAACCGGTCTAGAAGACACACGCTTTCTAGTGCA
TGGTAAGAATGCTCCAATTTATACTCTCTCGTGCTCTTTTGAGTACACCC
GGATGAGCGGGCGAATCAATCAAGTACTTAGCATCCTTGATCCGAAGACA
TGGACAATGACCATTCAAGACGTTATCAGAGGTCCCAATCCAGAGCACCA
CGAGAAAAACTGGGTATTTGCGGATGGCCTCCAAAATATTGTCTATGGAT
GGTATCCATCCATTCAGATCGGTGCAATCGACTTGGCTGCATCTGAATTG
GTCATACACACGTCGATAAAGTCTCCGAAATCATTTTCATCCATGCGAGG
ATCAACGAACGGCGTCTTGCATGAGAACGAATGGTGGTTCGTGACACATG
CCATGTTAGACCGCCCTGGGCAGCTACGTTACTACAGTCATCGCATTGTG
GTGCTTGACGAGCATTTGAAGTCCATCACGCGCTACAGTCTGCCCTTCAC
CTTCGAGCAAGACGCAGATACTGAGTATTGCTTGGGGTTCAAAGCAGACG
ATGCAGGTGTGACTTTTGGGTACAGTGTGCGAGACCGAACAAGTCGAACG
CTGCACGTGGACTGGTCGGAGGTTCTGCTACTTTTTGACGACAAGGAGCC
CAAACAACGATAACGAAAACATGAAAATTCTTCAAAGCGGACGACGATAC
GTGTCCTTAGAGTAGGCTGAGCAAAACCACTTAAGTTAAACACTGTATGT
GGACAGGCCGGAGATCCAGCTGCTTCTTTATGACAAGTAGGTTGAAGGAT
ATATATTCGAAGGAACGATGAAAAGAACACGAAAATACTTCAAAGCG
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protein sequence of NO30G00130.1

>NO30G00130.1-protein ID=NO30G00130.1-protein|Name=NO30G00130.1|organism=Nannochloropsis oceanica|type=polypeptide|length=426bp
MTPSIRFSLFQTLALIVLHTLFFLSWLNGTHVPPTKSYEGTPSSMVISSE
TQEKAPAYYEFGHNEEINTIQAFLEAEESYTNKRLKRGLAMAMQLLDKDL
PWDLRDTILKTLPSYTRKLKGQTKVLREEKSTDADWWFATPGFLTSDGTD
RTIIRVVNYYIDLDGSYYVSNDKIKTKMLVAETNEWISVTESPAFAVVAA
QEKLHYPDVYETGLEDTRFLVHGKNAPIYTLSCSFEYTRMSGRINQVLSI
LDPKTWTMTIQDVIRGPNPEHHEKNWVFADGLQNIVYGWYPSIQIGAIDL
AASELVIHTSIKSPKSFSSMRGSTNGVLHENEWWFVTHAMLDRPGQLRYY
SHRIVVLDEHLKSITRYSLPFTFEQDADTEYCLGFKADDAGVTFGYSVRD
RTSRTLHVDWSEVLLLFDDKEPKQR*
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mRNA from alignment at chr30:64135..66381-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO30G00130.1 ID=NO30G00130.1|Name=NO30G00130.1|organism=Nannochloropsis oceanica|type=mRNA|length=2247bp|location=Sequence derived from alignment at chr30:64135..66381- (Nannochloropsis oceanica)
CTATCGAGAGCATACAAATAATTTGAAATACAAGGGCCTACCCACCATCC
TAATTCACAGAGCGGACGATATTCCCGATCTGGTACAAATGATAAGTCAG
TGAAAAACGTGGGCGAAGAGACGCACTACCCGATCACCCTCATCGACTCA
TGCTTGGATGTGCTGAAGGGGGCAAAGTAAGACCAAACCCCAAGCCCTTA
AGCGAGTAAAGCAGCCGTGCTGCATGATGGGGAATTTGTTGTGAGCCCCC
CGCATGCCGGTTTGGGGATTTTAGCATTCTATGAAAGGACATGGAGGTGC
TGTGCTGTTTGTGCTGCGATGCGTAGAGCGCTTGGCATGCCAGAGGACGC
GTCTCGCCGGTCGCGCCCACAGATTGCTCATTGCATCAGCGCGACGAAAA
GTCCAGCGAGATGTGCTCCGGCGTAGCGACCGACTGCGAAGTCCACCATC
TAGACTTGTACCCCGTTAGAATGGCAAGAGGTTCCCCGGTACTGATCACT
CTCCCCTCCTGCATATGCCCACAGCATCTTCTCAAATTACACTCTACGCC
GCGCTGTACCACCCGCCTCATTATCACTTATTATCATCGTCAACCTCCTA
TCAAATAGATCGGTTCCTGTTCCAAGAGGTCTATAATCGGCGCTTATAAG
GCAAAGTTAGAACTCAAGGAGCGGTGAGCCGCAACGGGACATCGGACGCC
AAGGCCCAAAGGTTGTCCTCGTTTGGTGAAACCACTGCCATCGACAATAT
TGTTGCCCTACAAAGTCACACGTGAGAGCTTAGTGATGACACCTTCTATA
CGGTTTTCTCTCTTTCAAACACTCGCACTGATTGTATTACATACGCTGTT
TTTCCTCAGCTGGTTGAATGGCACGCATGTCCCTCCCACCAAATCGTATG
AGGGAACACCTTCATCAATGGTCATATCATCCGAGACTCAAGAAAAGGCT
CCAGCATACTATGAATTTGGCCACAATGAGGAAATTAACACAATTCAAGC
ATTCTTGGAGGCGGAAGAATCGTACACGAACAAGCGCTTAAAGCGTGGAT
TGGCCATGGCCATGCAGCTCCTCGACAAGGACCTGCCTTGGGATCTAAGA
GACACAATCCTTAAAACTCTTCCTTCTTATACTAGAAAGTTGAAGGGGCA
AACAAAGGTGCTCCGGGAGGAAAAGTCCACTGATGCTGACTGGTGGTTTG
CAACGCCAGGCTTCTTGACATCCGATGGTACTGATCGTACCATAATCCGA
GTTGTCAATTATTACATAGACCTCGATGGATCCTACTATGTCTCGAATGA
CAAAATTAAAACAAAGATGTTGGTCGCGGAGACGAATGAATGGATCAGCG
TAACGGAATCGCCAGCCTTTGCAGTCGTTGCTGCGCAAGAAAAATTACAT
TACCCCGACGTGTACGAAACCGGTCTAGAAGACACACGCTTTCTAGTGCA
TGGTAAGAATGCTCCAATTTATACTCTCTCGTGCTCTTTTGAGTACACCC
GGATGAGCGGGCGAATCAATCAAGTACTTAGCATCCTTGATCCGAAGACA
TGGACAATGACCATTCAAGACGTTATCAGAGGTCCCAATCCAGAGCACCA
CGAGAAAAACTGGGTATTTGCGGATGGCCTCCAAAATATTGTCTATGGAT
GGTATCCATCCATTCAGATCGGTGCAATCGACTTGGCTGCATCTGAATTG
GTCATACACACGTCGATAAAGTCTCCGAAATCATTTTCATCCATGCGAGG
ATCAACGAACGGCGTCTTGCATGAGAACGAATGGTGGTTCGTGACACATG
CCATGTTAGACCGCCCTGGGCAGCTACGTTACTACAGTCATCGCATTGTG
GTGCTTGACGAGCATTTGAAGTCCATCACGCGCTACAGTCTGCCCTTCAC
CTTCGAGCAAGACGCAGATACTGAGTATTGCTTGGGGTTCAAAGCAGACG
ATGCAGGTGTGACTTTTGGGTACAGTGTGCGAGACCGAACAAGTCGAACG
CTGCACGTGGACTGGTCGGAGGTTCTGCTACTTTTTGACGACAAGGAGCC
CAAACAACGATAACGAAAACATGAAAATTCTTCAAAGCGGACGACGATAC
GTGTCCTTAGAGTAGGCTGAGCAAAACCACTTAAGTTAAACACTGTATGT
GGACAGGCCGGAGATCCAGCTGCTTCTTTATGACAAGTAGGTTGAAGGAT
ATATATTCGAAGGAACGATGAAAAGAACACGAAAATACTTCAAAGCG
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Coding sequence (CDS) from alignment at chr30:64135..66381-

>NO30G00130.1 ID=NO30G00130.1|Name=NO30G00130.1|organism=Nannochloropsis oceanica|type=CDS|length=1278bp|location=Sequence derived from alignment at chr30:64135..66381- (Nannochloropsis oceanica)
ATGACACCTTCTATACGGTTTTCTCTCTTTCAAACACTCGCACTGATTGT
ATTACATACGCTGTTTTTCCTCAGCTGGTTGAATGGCACGCATGTCCCTC
CCACCAAATCGTATGAGGGAACACCTTCATCAATGGTCATATCATCCGAG
ACTCAAGAAAAGGCTCCAGCATACTATGAATTTGGCCACAATGAGGAAAT
TAACACAATTCAAGCATTCTTGGAGGCGGAAGAATCGTACACGAACAAGC
GCTTAAAGCGTGGATTGGCCATGGCCATGCAGCTCCTCGACAAGGACCTG
CCTTGGGATCTAAGAGACACAATCCTTAAAACTCTTCCTTCTTATACTAG
AAAGTTGAAGGGGCAAACAAAGGTGCTCCGGGAGGAAAAGTCCACTGATG
CTGACTGGTGGTTTGCAACGCCAGGCTTCTTGACATCCGATGGTACTGAT
CGTACCATAATCCGAGTTGTCAATTATTACATAGACCTCGATGGATCCTA
CTATGTCTCGAATGACAAAATTAAAACAAAGATGTTGGTCGCGGAGACGA
ATGAATGGATCAGCGTAACGGAATCGCCAGCCTTTGCAGTCGTTGCTGCG
CAAGAAAAATTACATTACCCCGACGTGTACGAAACCGGTCTAGAAGACAC
ACGCTTTCTAGTGCATGGTAAGAATGCTCCAATTTATACTCTCTCGTGCT
CTTTTGAGTACACCCGGATGAGCGGGCGAATCAATCAAGTACTTAGCATC
CTTGATCCGAAGACATGGACAATGACCATTCAAGACGTTATCAGAGGTCC
CAATCCAGAGCACCACGAGAAAAACTGGGTATTTGCGGATGGCCTCCAAA
ATATTGTCTATGGATGGTATCCATCCATTCAGATCGGTGCAATCGACTTG
GCTGCATCTGAATTGGTCATACACACGTCGATAAAGTCTCCGAAATCATT
TTCATCCATGCGAGGATCAACGAACGGCGTCTTGCATGAGAACGAATGGT
GGTTCGTGACACATGCCATGTTAGACCGCCCTGGGCAGCTACGTTACTAC
AGTCATCGCATTGTGGTGCTTGACGAGCATTTGAAGTCCATCACGCGCTA
CAGTCTGCCCTTCACCTTCGAGCAAGACGCAGATACTGAGTATTGCTTGG
GGTTCAAAGCAGACGATGCAGGTGTGACTTTTGGGTACAGTGTGCGAGAC
CGAACAAGTCGAACGCTGCACGTGGACTGGTCGGAGGTTCTGCTACTTTT
TGACGACAAGGAGCCCAAACAACGATAA
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Synonyms
Publications