NO30G00130, NO30G00130 (gene) Nannochloropsis oceanica

Overview
NameNO30G00130
Unique NameNO30G00130
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2247
Alignment locationchr30:64135..66381 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr30genomechr30:64135..66381 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO30G00130 vs. NCBI_GenBank
Match: EWM20240.1 (hypothetical protein Naga_100380g2 [Nannochloropsis gaditana])

HSP 1 Score: 338.6 bits (867), Expect = 2.900e-89
Identity = 163/340 (47.94%), Postives = 226/340 (66.47%), Query Frame = 0 
Query:   86 KRGLAMAMQLLDKD-LPWDLRDTILKTLPSYTRKLKGQTKVLREEKSTDADWWFATPGFLTSDGTDRTIIRVVNYYIDLDGSYYVSND-KIKTKMLVAETNEWISVTESPAFAVVAAQEKLHYPDVYETGLEDTRFL----VHGKNAPIYTLSCSFEYTRMSGRINQVLSILDPKTWTMTIQDVIRGPNPEHHEKNWVFADGLQNIVYGWYPSIQIGAIDLAASELVIHTSIKSPKSFSSMRGSTNGVLHENEWWFVTHAMLDRPGQLRYYSHRIVVLDEHLKSITRYSLPFTFEQDADTEYCLGFKADDAGVTFGYSVRDRTSRTLHVDWSEVLLLFDD 420
            + GL++ M LL+   LP +L   +   +P YT+ L+G   +LR EK+ +  W F+TP FL S      ++R VNY+   DGSY+VS D ++KT++LV  ++++I + ES  F     +   H+P+ Y  GLEDTRF         ++ IYTLS S EY+R +  +NQ+L +++P TWT+TIQD+IRGP  +  EKNWVF +G++++VY WYP I+IG ID    E VI  SI+SP SF +MRGSTNG+LH NEWWFVTH +  R G+ R Y+HRIV+L+  +  + RYSLPFTF  + D EYCLG KAD+ G+TFGYSVRD++S TL   W E+   FDD
Sbjct:  211 RHGLSLCMNLLENPLLPSNLASIVYNNIPVYTQSLRGHRTLLRAEKNENDPWRFSTPTFLDS----HVLLREVNYFAAEDGSYHVSQDSQVKTRVLVDGSDQYIKIQESEDFRKRITERGWHHPEAYVQGLEDTRFKSTFDYKANSSVIYTLSASMEYSRSANHMNQLLGVIEPDTWTLTIQDIIRGPFGDRTEKNWVFVNGIESLVYEWYPFIRIGHIDRDKGEFVIDRSIQSPLSFLNMRGSTNGILHRNEWWFVTHMVKHRSGRRRIYTHRIVILNFEMSQVLRYSLPFTFNSETDIEYCLGLKADNEGLTFGYSVRDKSSWTLQCSWGEIEQYFDD 546
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BLAST of NO30G00130 vs. NCBI_GenBank
Match: EWM20170.1 (hypothetical protein Naga_101281g2, partial [Nannochloropsis gaditana])

HSP 1 Score: 196.8 bits (499), Expect = 1.300e-46
Identity = 88/156 (56.41%), Postives = 112/156 (71.79%), Query Frame = 0 
Query:  264 IRGPNPEHHEKNWVFADGLQNIVYGWYPSIQIGAIDLAASELVIHTSIKSPKSFSSMRGSTNGVLHENEWWFVTHAMLDRPGQLRYYSHRIVVLDEHLKSITRYSLPFTFEQDADTEYCLGFKADDAGVTFGYSVRDRTSRTLHVDWSEVLLLFDD 420
            IRGP  +   KNWVF +G++++VY WYP I+IG ID    E VI  SI+SP SF +MRGSTNG+LH NEWWFVTH +  R G+ R Y++R+V+L+  +  I RYSLPFTF  + D EYCLG KAD+ G+TFGYSVRD++S TL   W E+   FDD
Sbjct:    1 IRGPFGDRTGKNWVFVNGIESLVYEWYPFIRIGHIDRDKGEFVIDRSIQSPLSFLNMRGSTNGILHRNEWWFVTHMVKHRSGRRRIYTNRMVILNFEMSQILRYSLPFTFNSETDIEYCLGLKADNEGLTFGYSVRDKSSWTLQCSWREIEQYFDD 156
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BLAST of NO30G00130 vs. NCBI_GenBank
Match: EWM20239.1 (hypothetical protein Naga_100470g1 [Nannochloropsis gaditana])

HSP 1 Score: 98.6 bits (244), Expect = 5.000e-17
Identity = 53/136 (38.97%), Postives = 82/136 (60.29%), Query Frame = 0 
Query:   86 KRGLAMAMQLLDKD-LPWDLRDTILKTLPSYTRKLKGQTKVLREEKSTDADWWFATPGFLTSDGTDRTIIRVVNYYIDLDGSYYVSND-KIKTKMLVAETNEWISVTESPAFAVVAAQEKLHYPDVYETGLEDTRF 220
            + GL++ M LL+   LP +L   +   +P YT+ L+G   +LR EK+ +  W F+TP FL S      ++R VNY+   DGSY+VS D ++KT++LV  ++++I + ES  F     +   H+P+ Y  GLEDTRF
Sbjct:  211 RHGLSLCMNLLENPLLPSNLASIVYNNIPVYTQSLRGHRTLLRAEKNENDPWRFSTPTFLDS----HVLLREVNYFAAEDGSYHVSQDSQVKTRVLVDGSDQYIKIQESEDFRKRITERGWHHPEAYVQGLEDTRF 342
The following BLAST results are available for this feature:
BLAST of NO30G00130 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM20240.12.900e-8947.94hypothetical protein Naga_100380g2 [Nannochloropsi... [more]
EWM20170.11.300e-4656.41hypothetical protein Naga_101281g2, partial [Nanno... [more]
EWM20239.15.000e-1738.97hypothetical protein Naga_100470g1 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR074ncniR074Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO30G00130.1NO30G00130.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO30G00130.1NO30G00130.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO30G00130 ID=NO30G00130|Name=NO30G00130|organism=Nannochloropsis oceanica|type=gene|length=2247bp
CTATCGAGAGCATACAAATAATTTGAAATACAAGGGCCTACCCACCATCC
TAATTCACAGAGCGGACGATATTCCCGATCTGGTACAAATGATAAGTCAG
TGAAAAACGTGGGCGAAGAGACGCACTACCCGATCACCCTCATCGACTCA
TGCTTGGATGTGCTGAAGGGGGCAAAGTAAGACCAAACCCCAAGCCCTTA
AGCGAGTAAAGCAGCCGTGCTGCATGATGGGGAATTTGTTGTGAGCCCCC
CGCATGCCGGTTTGGGGATTTTAGCATTCTATGAAAGGACATGGAGGTGC
TGTGCTGTTTGTGCTGCGATGCGTAGAGCGCTTGGCATGCCAGAGGACGC
GTCTCGCCGGTCGCGCCCACAGATTGCTCATTGCATCAGCGCGACGAAAA
GTCCAGCGAGATGTGCTCCGGCGTAGCGACCGACTGCGAAGTCCACCATC
TAGACTTGTACCCCGTTAGAATGGCAAGAGGTTCCCCGGTACTGATCACT
CTCCCCTCCTGCATATGCCCACAGCATCTTCTCAAATTACACTCTACGCC
GCGCTGTACCACCCGCCTCATTATCACTTATTATCATCGTCAACCTCCTA
TCAAATAGATCGGTTCCTGTTCCAAGAGGTCTATAATCGGCGCTTATAAG
GCAAAGTTAGAACTCAAGGAGCGGTGAGCCGCAACGGGACATCGGACGCC
AAGGCCCAAAGGTTGTCCTCGTTTGGTGAAACCACTGCCATCGACAATAT
TGTTGCCCTACAAAGTCACACGTGAGAGCTTAGTGATGACACCTTCTATA
CGGTTTTCTCTCTTTCAAACACTCGCACTGATTGTATTACATACGCTGTT
TTTCCTCAGCTGGTTGAATGGCACGCATGTCCCTCCCACCAAATCGTATG
AGGGAACACCTTCATCAATGGTCATATCATCCGAGACTCAAGAAAAGGCT
CCAGCATACTATGAATTTGGCCACAATGAGGAAATTAACACAATTCAAGC
ATTCTTGGAGGCGGAAGAATCGTACACGAACAAGCGCTTAAAGCGTGGAT
TGGCCATGGCCATGCAGCTCCTCGACAAGGACCTGCCTTGGGATCTAAGA
GACACAATCCTTAAAACTCTTCCTTCTTATACTAGAAAGTTGAAGGGGCA
AACAAAGGTGCTCCGGGAGGAAAAGTCCACTGATGCTGACTGGTGGTTTG
CAACGCCAGGCTTCTTGACATCCGATGGTACTGATCGTACCATAATCCGA
GTTGTCAATTATTACATAGACCTCGATGGATCCTACTATGTCTCGAATGA
CAAAATTAAAACAAAGATGTTGGTCGCGGAGACGAATGAATGGATCAGCG
TAACGGAATCGCCAGCCTTTGCAGTCGTTGCTGCGCAAGAAAAATTACAT
TACCCCGACGTGTACGAAACCGGTCTAGAAGACACACGCTTTCTAGTGCA
TGGTAAGAATGCTCCAATTTATACTCTCTCGTGCTCTTTTGAGTACACCC
GGATGAGCGGGCGAATCAATCAAGTACTTAGCATCCTTGATCCGAAGACA
TGGACAATGACCATTCAAGACGTTATCAGAGGTCCCAATCCAGAGCACCA
CGAGAAAAACTGGGTATTTGCGGATGGCCTCCAAAATATTGTCTATGGAT
GGTATCCATCCATTCAGATCGGTGCAATCGACTTGGCTGCATCTGAATTG
GTCATACACACGTCGATAAAGTCTCCGAAATCATTTTCATCCATGCGAGG
ATCAACGAACGGCGTCTTGCATGAGAACGAATGGTGGTTCGTGACACATG
CCATGTTAGACCGCCCTGGGCAGCTACGTTACTACAGTCATCGCATTGTG
GTGCTTGACGAGCATTTGAAGTCCATCACGCGCTACAGTCTGCCCTTCAC
CTTCGAGCAAGACGCAGATACTGAGTATTGCTTGGGGTTCAAAGCAGACG
ATGCAGGTGTGACTTTTGGGTACAGTGTGCGAGACCGAACAAGTCGAACG
CTGCACGTGGACTGGTCGGAGGTTCTGCTACTTTTTGACGACAAGGAGCC
CAAACAACGATAACGAAAACATGAAAATTCTTCAAAGCGGACGACGATAC
GTGTCCTTAGAGTAGGCTGAGCAAAACCACTTAAGTTAAACACTGTATGT
GGACAGGCCGGAGATCCAGCTGCTTCTTTATGACAAGTAGGTTGAAGGAT
ATATATTCGAAGGAACGATGAAAAGAACACGAAAATACTTCAAAGCG
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protein sequence of NO30G00130.1

>NO30G00130.1-protein ID=NO30G00130.1-protein|Name=NO30G00130.1|organism=Nannochloropsis oceanica|type=polypeptide|length=426bp
MTPSIRFSLFQTLALIVLHTLFFLSWLNGTHVPPTKSYEGTPSSMVISSE
TQEKAPAYYEFGHNEEINTIQAFLEAEESYTNKRLKRGLAMAMQLLDKDL
PWDLRDTILKTLPSYTRKLKGQTKVLREEKSTDADWWFATPGFLTSDGTD
RTIIRVVNYYIDLDGSYYVSNDKIKTKMLVAETNEWISVTESPAFAVVAA
QEKLHYPDVYETGLEDTRFLVHGKNAPIYTLSCSFEYTRMSGRINQVLSI
LDPKTWTMTIQDVIRGPNPEHHEKNWVFADGLQNIVYGWYPSIQIGAIDL
AASELVIHTSIKSPKSFSSMRGSTNGVLHENEWWFVTHAMLDRPGQLRYY
SHRIVVLDEHLKSITRYSLPFTFEQDADTEYCLGFKADDAGVTFGYSVRD
RTSRTLHVDWSEVLLLFDDKEPKQR*
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Synonyms
Publications