NO30G00100, NO30G00100 (gene) Nannochloropsis oceanica

Overview
NameNO30G00100
Unique NameNO30G00100
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3147
Alignment locationchr30:46155..49301 -

Link to JBrowse

Properties
Property NameValue
DescriptionGlycosyl transferase, family 25
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr30genomechr30:46155..49301 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002654Glyco_trans_25
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Homology
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BLAST of NO30G00100 vs. NCBI_GenBank
Match: XP_011132150.1 (putative transmembrane protein [Gregarina niphandrodes] >EZG47684.1 putative transmembrane protein [Gregarina niphandrodes])

HSP 1 Score: 71.6 bits (174), Expect = 5.100e-9
Identity = 44/155 (28.39%), Postives = 74/155 (47.74%), Query Frame = 0 
Query:   60 FPVYYINMNGSEDRRQRTELLFGNLWDLRRSPAVAGSDSEALMELMGVDNYQRTAN----YIQHERYDDEDVAWNEAGCTLSHLTTIRKAYLDSNEVVMVMEDDVSPALMPFWSSSIVDLINEADRMNSSIPWHLIQAGWTWEKDKEIYIKNRPH 211
            FP++YIN+    +RR+  E  FG      R     G++  A+++   +   +   N    Y++ E          E G  + HL  I+KAY   ++ V++MEDD+   L P+W +S+  + ++AD       WH IQ  WT    +   IK++ H
Sbjct: 1383 FPIFYINLQKQSNRRRYMEETFGP--SAVRVGGTNGTNLFAVLDKYRIGEPEAFVNDPWGYLRRE----HQTTPGELGALIGHLDAIKKAYQGHHDTVLIMEDDMGVQLCPYWPASLAVVKSQADIYYPG--WHSIQLQWTPVGQQADIIKSKWH 1529
[Close]
BLAST of NO30G00100 vs. NCBI_GenBank
Match: XP_009039095.1 (hypothetical protein AURANDRAFT_65851 [Aureococcus anophagefferens] >EGB06140.1 hypothetical protein AURANDRAFT_65851 [Aureococcus anophagefferens])

HSP 1 Score: 68.6 bits (166), Expect = 4.300e-8
Identity = 61/194 (31.44%), Postives = 92/194 (47.42%), Query Frame = 0 
Query:   65 INMNGSEDRRQRTELLFGNLW-DLRRSPAVAGS----DSEALMELMGVDNYQRTANY-IQHERY--DDEDVAWNEAGCTLSHLTTIRKAY-LDSNEVVMVMEDDVSPALMPFWSSSIVDLINEADRMNSSIPWHLIQAGWTWEKDKEIYIKNRPHPGRQLVQ--------ERFQWGLFAYIINRRGMETFLDAY 242
            IN++ + DR    E  F        R PAV G+    D  A++E   V+ Y   A++ I+ ER+  + + +   E GC LSHL  I++ Y  + +E V+V+EDD+S   +P W+ S+ D I  AD       W +++              N P   R L++        +R  W    YIINRRGM+  LD Y
Sbjct:    3 INLDRAPDRLAFMEKQFAEHGVRYERFPAVDGAAVAGDPAAVVEGCAVE-YCAPADFGIERERWCREGKKLRVGEIGCVLSHLACIKRVYEANEHEAVVVVEDDISLEFVPKWTRSLGD-IARAD------GWGIVKISC-----------NHPAGVRNLLKMDEGLVPFKRHYWSTGMYIINRRGMKLVLDKY 177
[Close]
BLAST of NO30G00100 vs. NCBI_GenBank
Match: XP_003084322.1 (Glycosyl transferase, family 25 [Ostreococcus tauri] >CAL58387.1 Glycosyl transferase, family 25 [Ostreococcus tauri])

HSP 1 Score: 66.6 bits (161), Expect = 1.600e-7
Identity = 46/187 (24.60%), Postives = 83/187 (44.39%), Query Frame = 0 
Query:   59 PFPVYYINMNGSEDRRQRTELLFGNL---WDLRRSPAVAGSDSEALMELMGVDNYQRTANYIQHERYDDEDVAWNEAGCTLSHLTTIRKAYLDSNEVVMVMEDDVSPALMPFWSSSIVDLINEADRMNSSIP--WHLIQAGWTWEKDKEIYIKNRPHPGRQLVQERFQWGLFAYIINRRGMETFLDA 241
            P  +Y+IN+  S DR    +     L   +++R    VA ++ EA+        + R   ++ +E +     ++ E  C  SHL  + +A+++ +++ ++MEDDV             D ++  +R     P  W+++Q     EK    + K R     +   E   W   AYIINR+G+   L A
Sbjct:   46 PLAIYWINLQSSADRHHLIKSHLDALAAKFEIRSERIVAVTEQEAVQNSDVFSGWFRFTKHVSYEHHTQNIYSFKELACLQSHLRALERAFVNGDDIAIIMEDDVLLR---------EDFMHNFNRYVQRAPSDWNILQLYTLNEKVIRYFRKLRQTYYIKWFPE--HWSTGAYIINRQGLSKVLRA 221
The following BLAST results are available for this feature:
BLAST of NO30G00100 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
XP_011132150.15.100e-928.39putative transmembrane protein [Gregarina niphandr... [more]
XP_009039095.14.300e-831.44hypothetical protein AURANDRAFT_65851 [Aureococcus... [more]
XP_003084322.11.600e-724.60Glycosyl transferase, family 25 [Ostreococcus taur... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR074ncniR074Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO30G00100.1NO30G00100.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO30G00100.1NO30G00100.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO30G00100 ID=NO30G00100|Name=NO30G00100|organism=Nannochloropsis oceanica|type=gene|length=3147bp
GAAAGATGCATACGGCAAAGATCGATATTTTAGTTTCTATCCCGGCCCAT
TTACGCACATCTTTCTTAGAACCAGGTATTTCATGATGAAATAATGATTT
TCATTATCATTGTCATTTATTTTACACACTCATCGCAAAAATCAGTTTCC
TCATGGAAATTTGGAAAGAGGTTATCAAAGCCTCTCGCACTTACTAGCGA
GGTTTTGCTTTGTATTTTTCAATAATCGATTTCAGCTTACGCTCCAACAG
ACTTCTACCAATTTACAGCCTTATTTGTGAGAATATGAAGAAGAATAATG
CACCCAAAAGCATAGGAAAGACCGCTGCTTTCATTTTAACCTTCATCATG
GTCTATATCTTCCTATCACACGGCGAGAGCGTGCTCATGAATTTTTTTCA
AACAAGTGGTCATGCCAAGGAGAGTACCCACCTATTTGGTGGTATTGATT
ACAAATTGCCTTTTCCTGTGTACTATATCAACATGAATGGCAGCGAAGAT
CGTCGGCAGCGTACTGAACTCCTCTTTGGGAACTTATGGGATCTTCGACG
GAGTCCGGCGGTAGCAGGGAGTGATTCAGAAGCTTTAATGGAGCTCATGG
GTGTGGATAATTATCAGCGAACCGCCAACTACATTCAGCATGAGAGATAT
GATGATGAAGATGTGGCGTGGAACGAAGCTGGATGCACGTTGTCCCATTT
GACCACTATCCGGAAGGCATATTTGGATAGCAATGAGGTGGTCATGGTTA
TGGAGGACGATGTATCGCCAGCTTTGATgtgagttggtctcattttgtaa
cgatgcattcgcaaatttctctccttatcttcatcacacgaccatcttat
atctcatatcatgcggatacagGCCGTTTTGGTCATCGTCCATAGTCGAC
CTCATAAATGAGGCCGATAGGATGAACTCTTCTATTCCCTGGCACTTGAT
CCAAGCAGGATGGACTTGGGAAAAGGATAAGGAGATCTATATTAAAAATC
GTCCCCACCCAGGACGGCAACTAGTACAGGAACGGTTTCAATGGGGACTT
TTTGCGTATATTATAAATAGACGCGGGATGGAGACGTTCTTAGATGCCTA
TTTCTCCGACAGATCCCCGACAGGCTTGATCCGCCACTTAAACGTGGGTG
AAGTGGCTGAAAACTACTTTAATATATTAGAGACCAGCATCTACGTTGCT
CTTCCTTCTTTATTTGTCATTCACGGGGGCGAAAGCACTATTGCTGGTGG
ACACGGGCATCGCATGCATATTCACCTCCGCTCTAATAGCGTTCACACAC
AGGAAACCTTGCGGCTCATGGTTGAGCGCCTCAGAAATGAAAACATAGGA
CAAGAGAATCGTTACAACTGACTTATCCTTTCTACAAGAAAGCTTCCACA
GATTAAGAATGTATGAGGCAAAAAAGTCAACTGGATGTGGCCCCTTGTGT
AAGTTCTCTATTAAGGAACCATGTGTACGCAACCCAGAATACTTAGATAC
CTTGAGTTGGCGTTTCTAGTCGCCAAGAAAAAATGCGAAAAATGCAATTC
TTCGTTGAACTTACTAGAAAAGAAACAATGTTCAGAATTACTGCTCACAA
GGAAAAAAGCACTAACTTCGAATTTGGATAGGGAAAGGGGAAGGAGGAGA
AGAAGGCAGAAGGAGGCCGGCCCCCTTGAACATCTTGATACTGGTACGAA
GGCCATGAAGATTGGGAGTGACAGGAGGAAGAAGCACCTTCTCCTGGTTT
TTGGCTAATTAACTATTTCAGATCAACTTGGACTCCAACCATGCTCAGTG
TAGTGCTTATTAGTACATTACATATATGAGTTACTATTTGGTGGCAAACA
GAACACCTCAAAAATATTCATAGAAAGCCTTCTTGCTGAGCGTTTCGACC
CCTCGTCGTACTGTCTTCTCCTGAGTGATGTATTTATAAATTCTTTGGCA
TTCGAGGACGAGGCTTCTTTACTAGGTGTTAGCTTAAGGCAAGCCTAGCT
TGTTCACTGTATGTTGACCCATTTGGACCCGGCACCGGCTGGTGTATCGA
GACACTCGGATGCGCGGAGGGGCGTACGGGAAGGGAATGCTGTCGTTCTA
TTTGTTGCTGCCTATACCTAAAGTAGTGAGATCCCCCCTTGTTGATGAGA
GCTTTCTTTGCTAGCTGCTTGCTATTTCCCTTGTGTGCTAACCATACACA
CAATGCGCTCGTCACACAAGGTTTGCTGTAAGATATACCATCTGCTGCAC
TTGCCGCTAGAATTCCCGTACATATGTTCTTGTGCGCATGCGGGACAGTG
ATTAATGTCGCCCTCTCCTTCGGGGCCAACAAGTCGCCAGGTTTTGCCGC
ACTGACATACATTGACAAGCACGGGTGAGCAACGTCTCCCAGCGGCGCAT
CATGGCCTTCATCATGGTGCTCGAAAAGATACGTTTGGTTTAGATAAGGG
CAAAGACGTGGTCTTGCTCAAGGACCAAACAGATATTCGCTATTCATAGA
CAAGGAGATGACTCTGTCTCTACTCGAATCCAGAGAGGGGCACCGGGTAT
TGATATTTCGGGTACCCAAAAAAACCCGGGTAAATACCCGGGTAAAACCC
CACCCGAGTAAGTATTTCCAACTGGGTACCCAAGTGACCTGGGCACCTGG
AATAACAGTTGTGGGAAAACGAGAGGAAAGAAAAGGAGAGGTGGAAATGA
AAAGGAAGGCGAGAAGAGAAGGGACTGGACGCTTTTGTTATACGCGTTTC
CAAGTAACTCAGCGCGAAGAGGAATCTATGTAGGGGGGCCCTGGCATCCG
ATTTCCCCACTCATACTCCCTCCATCAGATCTCTTCCTCACACACACCCT
CCAACGGGTTTCCCCGGGTAGACGTCTGGACAACACAGGTCTACCCGGGT
AGGAGAAATGCTACCCGGTGCCCATGCCTGCTCGAACCGAGCATTTTTAT
ACGTATGGCTCAAGATGTAGACCCACATAATTGGATGCCTGAGCGACGAT
GAGGTATAAATGTCATCAAACTCTCCTTCTTATCACACGGCCTATACAGA
AAGTTATGTACGTTTTTCGCTCTTTTTACTTTTTTTGGATTTTAATCACC
ATCACGAGCCTTGCCACCGACACGATTGCATCTACTTCTATCATAAT
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protein sequence of NO30G00100.1

>NO30G00100.1-protein ID=NO30G00100.1-protein|Name=NO30G00100.1|organism=Nannochloropsis oceanica|type=polypeptide|length=331bp
MKKNNAPKSIGKTAAFILTFIMVYIFLSHGESVLMNFFQTSGHAKESTHL
FGGIDYKLPFPVYYINMNGSEDRRQRTELLFGNLWDLRRSPAVAGSDSEA
LMELMGVDNYQRTANYIQHERYDDEDVAWNEAGCTLSHLTTIRKAYLDSN
EVVMVMEDDVSPALMPFWSSSIVDLINEADRMNSSIPWHLIQAGWTWEKD
KEIYIKNRPHPGRQLVQERFQWGLFAYIINRRGMETFLDAYFSDRSPTGL
IRHLNVGEVAENYFNILETSIYVALPSLFVIHGGESTIAGGHGHRMHIHL
RSNSVHTQETLRLMVERLRNENIGQENRYN*
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Synonyms
Publications