NO30G00030.3, NO30G00030.3 (mRNA) Nannochloropsis oceanica

Overview
NameNO30G00030.3
Unique NameNO30G00030.3
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1800
Alignment locationchr30:9452..11397 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr30genomechr30:9452..11397 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO30G00030.3 vs.
Match: EWM20221.1 (hypothetical protein Naga_100716g2 [Nannochloropsis gaditana])

HSP 1 Score: 436.8 bits (1122), Expect = 9.800e-119
Identity = 218/486 (44.86%), Postives = 294/486 (60.49%), Query Frame = 0 
Query:   49 NNDLRNPARGDENSEVEQHAYGFRTLIDEYRTLWTAGWNARYAKYYLPVPPKVTWALEAEDIVEREYRRLHFPAHCSDVNGWLVVNAYNWGVMSAMRDYQSDILRALAMNYTVVHQGVYNLCPSNPQQFLDCFWEDLNACQSEFPSLLSVPRINQPQEITTSAVFHEQFPHWLWNLLVDKGAIHLQHGLTGATLT--EEDIVDEDQYLQLKLSVLRAILSKRIFKPRKHIQRKTLAMLKSWRSNGSYANTSEKGVVIHIRRTDKMSDLGAHWHYIDFESTAHLGRLVQTMENMINSTFQHFFVMSDDPIMQKRGTKELASFFQANPSN--LVSTELCDLLGANRLEYDGHESLAAAHRHQLYDIVVAEMYAAIEVSQYIIGSGSCAVSQFMALNIGARHRVGRSDKYLLATLLMYVTPLFLRPTEPGLVALWEEDLIIKECRLLLHQRMSLHKPCNASSYLERSSSKPLFQTFLDGQWNDKTCLQF 531
            N+D     R D+N        G   ++D  RTLWTAGWNARY +YY    P +TW   AEDI EREYRRLHFP+ C +V GW+V   Y WG++S  RDYQSDILRA+  N T+VH G Y  CP+NP+++L+CFWED N+CQ+ + +  +VP + Q  + +   +  ++FPHWLW L+ D   +H+    TG  L+  E+  +D D +LQ KLSV+RAI++K +FKPR+ I   +   +++W  N +Y  +S  G+++HIRRTDK+ DLG HW +IDF ST H+G  +Q ME+ INS+F ++ V+SDDP MQ++ T EL  +FQ       L ST LC  LG+N   Y GHESL    RH LY ++++++YAAI+VS YIIGSGSC VSQF+A NIGA+H                         EP   A WEEDLI+KEC  LL Q               R S  P+ +  L  +W  KTC  F
Sbjct:   27 NHDNAPHGRKDQN--------GVMMIVDPERTLWTAGWNARYTRYYKDSKPIITWTKHAEDIFEREYRRLHFPSSCLEVRGWMVTKPYWWGLVSVARDYQSDILRAMTRNLTLVHDGPYMFCPNNPERYLNCFWEDFNSCQNFWKTQPNVPIVEQTWQGSIKPLSSDEFPHWLWRLMRD--YMHIYDDSTGRILSIEEDAFLDTDMFLQTKLSVMRAIMTKTVFKPREFIIESSKKSIETWGENENYHGSSRLGLLVHIRRTDKLEDLGPHWRHIDFNSTRHMGPYIQAMESAINSSFDNYVVLSDDPHMQEKATFELTPYFQNGNGTQALYSTSLCHFLGSNDFNYTGHESLDYNARHDLYVLLLSDIYAAIQVSDYIIGSGSCGVSQFIAWNIGAKHYF-----------------------EPSPAAFWEEDLIVKECHWLLDQ--------------HRQSKNPITKAMLHREWGRKTCAAF 465
The following BLAST results are available for this feature:
BLAST of NO30G00030.3 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20221.19.800e-11944.86hypothetical protein Naga_100716g2 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO30G00030NO30G00030Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO30G00030.3NO30G00030.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO30G00030.3.cds1NO30G00030.3.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00030.3.cds2NO30G00030.3.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00030.3.cds3NO30G00030.3.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO30G00030.3 ID=NO30G00030.3|Name=NO30G00030.3|organism=Nannochloropsis oceanica|type=mRNA|length=1800bp
ATTCTCTTGTCTTATTGTATCCTTGAATTATTTATTTTCATACACATTGT
ATAAAAATGCAGGATCACATGACGGCATTTCCCAAAAGCGAATGGAAACT
GCGTTTTTATCAATCAATCCTACTGTCGAGCGTATGTATAATGATGCTGG
AAAGTCGCGAAAGGTTAAAAATGGCTGACTTCACAATTTCTGGTATTAAA
AATAATGACCTTCGAAACCCTGCTCGGGGAGATGAAAATTCCGAGGTGGA
ACAGCACGCTTATGGTTTTCGAACGCTGATTGATGAGTATCGTACTCTCT
GGACCGCGGGGTGGAACGCGCGATACGCCAAATACTACCTACCGGTGCCA
CCAAAAGTAACGTGGGCACTGGAGGCTGAGGACATTGTTGAGAGAGAGTA
TCGTCGTTTGCATTTCCCTGCCCACTGCAGCGATGTCAATGGGTGGCTGG
TTGTCAATGCATACAATTGGGGCGTTATGTCGGCGATGCGGGACTATCAA
TCTGATATTCTGCGAGCCTTGGCCATGAACTACACAGTAGTGCATCAAGG
AGTATACAATTTGTGTCCTTCAAATCCGCAGCAATTTTTAGACTGTTTTT
GGGAGGACTTGAATGCCTGTCAATCTGAGTTTCCTTCCCTTTTAAGCGTT
CCCAGAATAAACCAACCCCAGGAAATTACCACATCGGCAGTGTTCCATGA
ACAATTCCCGCATTGGCTGTGGAATCTATTGGTTGACAAGGGGGCCATAC
ACCTACAGCATGGACTGACGGGTGCAACACTGACGGAAGAGGACATTGTG
GATGAGGATCAATATCTTCAACTCAAGCTATCTGTGTTAAGAGCAATTCT
TAGCAAAAGAATCTTCAAGCCGAGGAAGCATATCCAGCGAAAGACTTTGG
CGATGCTTAAGTCGTGGAGATCGAATGGAAGCTACGCAAATACATCCGAA
AAAGGCGTAGTGATTCACATCCGTCGCACTGATAAGATGAGTGACTTAGG
GGCTCATTGGCACTATATCGACTTTGAGTCCACTGCACACTTAGGGCGCC
TAGTTCAGACGATGGAAAATATGATCAACAGTACTTTCCAGCATTTTTTT
GTCATGTCCGATGACCCCATCATGCAAAAGCGTGGTACCAAGGAGCTTGC
TTCCTTTTTCCAGGCCAATCCTTCAAATCTTGTTAGTACCGAGCTCTGCG
ATCTGTTGGGAGCCAATCGGTTGGAGTACGACGGCCACGAATCGCTTGCG
GCAGCTCACCGTCACCAGCTATATGATATTGTTGTCGCAGAAATGTACGC
CGCTATCGAAGTTTCTCAGTACATCATTGGGTCTGGTTCCTGTGCCGTTA
GCCAGTTCATGGCTCTTAACATTGGGGCAAGACACCGCGTCGGTAGGTCG
GATAAATATTTACTTGCCACTCTTCTCATGTACGTAACTCCACTTTTTCT
TCGTCCTACAGAACCAGGCCTTGTAGCTCTTTGGGAGGAAGACTTAATCA
TAAAGGAATGTCGCTTGCTTCTTCATCAGCGAATGAGTTTGCACAAACCG
TGTAACGCTTCATCGTACTTGGAGCGGTCAAGCAGCAAACCCTTATTTCA
AACGTTCTTAGACGGGCAATGGAATGACAAGACATGCCTCCAATTCTTGC
CCCCCTTGCCAAACTGTTTTGGTGATGCAGGATGAGAGGGAAACATCGAC
TTAAACAATGATATGGCTCAAAACATTGCTTCTACCCACTCCCGCTAAGA
GCATTAGATAAGATGATTAGATCCAACACATTATTAAAAATGCGGGGCAA
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protein sequence of NO30G00030.3

>NO30G00030.3-protein ID=NO30G00030.3-protein|Name=NO30G00030.3|organism=Nannochloropsis oceanica|type=polypeptide|length=543bp
MQDHMTAFPKSEWKLRFYQSILLSSVCIMMLESRERLKMADFTISGIKNN
DLRNPARGDENSEVEQHAYGFRTLIDEYRTLWTAGWNARYAKYYLPVPPK
VTWALEAEDIVEREYRRLHFPAHCSDVNGWLVVNAYNWGVMSAMRDYQSD
ILRALAMNYTVVHQGVYNLCPSNPQQFLDCFWEDLNACQSEFPSLLSVPR
INQPQEITTSAVFHEQFPHWLWNLLVDKGAIHLQHGLTGATLTEEDIVDE
DQYLQLKLSVLRAILSKRIFKPRKHIQRKTLAMLKSWRSNGSYANTSEKG
VVIHIRRTDKMSDLGAHWHYIDFESTAHLGRLVQTMENMINSTFQHFFVM
SDDPIMQKRGTKELASFFQANPSNLVSTELCDLLGANRLEYDGHESLAAA
HRHQLYDIVVAEMYAAIEVSQYIIGSGSCAVSQFMALNIGARHRVGRSDK
YLLATLLMYVTPLFLRPTEPGLVALWEEDLIIKECRLLLHQRMSLHKPCN
ASSYLERSSSKPLFQTFLDGQWNDKTCLQFLPPLPNCFGDAG*
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mRNA from alignment at chr30:9452..11397+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO30G00030.3 ID=NO30G00030.3|Name=NO30G00030.3|organism=Nannochloropsis oceanica|type=mRNA|length=1946bp|location=Sequence derived from alignment at chr30:9452..11397+ (Nannochloropsis oceanica)
ATTCTCTTGTCTTATTGTATCCTTGAATTATTTATTTTCATACACATTGT
ATAAAAATGCAGGATCACATGACGGCATTTCCCAAAAGCGAATGGAAACT
GCGTTTTTATCAATCAATCCTACTGTCGAGCGTATGTATAATGATGCTGG
AAAGTCGCGAAAGGTTAAAAATGGCTGACTTCACAATTTCTGGTATTAAA
AATAATGACCTTCGAAACCCTGCTCGGGGAGATGAAAATTCCGAGGTGGA
ACAGCACGCTTATGGTTTTCGAACGCTGATTGATGAGTATCGTACTCTCT
GGACCGCGGGGTGGAACGCGCGATACGCCAAATACTACCTACCGGTGCCA
CCAAAAGTAACGTGGGCACTGGAGGCTGAGGACATTGTTGAGAGAGAGTA
TCGTCGTTTGCATTTCCCTGCCCACTGCAGCGATGTCAATGGTAAGAGGG
GTTGGAACAAAGGTATATATAATAATGGAAAGAAAATCCCATATCCATCT
GCATTCGCCCCGTATAGGGTGGCTGGTTGTCAATGCATACAATTGGGGCG
TTATGTCGGCGATGCGGGACTATCAATCTGATATTCTGCGAGCCTTGGCC
ATGAACTACACAGTAGTGCATCAAGGAGTATACAATTTGTGTCCTTCAAA
TCCGCAGCAATTTTTAGACTGTTTTTGGGAGGACTTGAATGCCTGTCAAT
CTGAGTTTCCTTCCCTTTTAAGCGTTCCCAGAATAAACCAACCCCAGGAA
ATTACCACATCGGCAGTGTTCCATGAACAATTCCCGCATTGGCTGTGGAA
TCTATTGGTTGACAAGGGGGCCATACACCTACAGCATGGACTGACGGGTG
CAACACTGACGGAAGAGGACATTGTGGATGAGGATCAATATCTTCAACTC
AAGCTATCTGTGTTAAGAGCAATTCTTAGCAAAAGAATCTTCAAGCCGAG
GAAGCATATCCAGCGAAAGACTTTGGCGATGCTTAAGTCGTGGAGATCGA
ATGGAAGCTACGCAAATACATCCGAAAAAGGCGTAGTGATTCACATCCGT
CGCACTGATAAGATGAGTGACTTAGGGGCTCATTGGCACTATATCGACTT
TGAGTCCACTGCACACTTAGGGCGCCTAGTTCAGACGATGGAAAATATGA
TCAACAGTACTTTCCAGCATTTTTTTGTCATGTCCGATGACCCCATCATG
CAAAAGCGTGGTACCAAGGAGCTTGCTTCCTTTTTCCAGGCCAATCCTTC
AAATCTTGTTAGTACCGAGCTCTGCGATCTGTTGGGAGCCAATCGGTTGG
AGTACGACGGCCACGAATCGCTTGCGGCAGCTCACCGTCACCAGCTATAT
GTACGTACACTAGCGTTGGACCGATGCTTTGCGTGACCACTATCTCTAAT
TTTGATTTCTTGCAATACAGGATATTGTTGTCGCAGAAATGTACGCCGCT
ATCGAAGTTTCTCAGTACATCATTGGGTCTGGTTCCTGTGCCGTTAGCCA
GTTCATGGCTCTTAACATTGGGGCAAGACACCGCGTCGGTAGGTCGGATA
AATATTTACTTGCCACTCTTCTCATGTACGTAACTCCACTTTTTCTTCGT
CCTACAGAACCAGGCCTTGTAGCTCTTTGGGAGGAAGACTTAATCATAAA
GGAATGTCGCTTGCTTCTTCATCAGCGAATGAGTTTGCACAAACCGTGTA
ACGCTTCATCGTACTTGGAGCGGTCAAGCAGCAAACCCTTATTTCAAACG
TTCTTAGACGGGCAATGGAATGACAAGACATGCCTCCAATTCTTGCCCCC
CTTGCCAAACTGTTTTGGTGATGCAGGATGAGAGGGAAACATCGACTTAA
ACAATGATATGGCTCAAAACATTGCTTCTACCCACTCCCGCTAAGAGCAT
TAGATAAGATGATTAGATCCAACACATTATTAAAAATGCGGGGCAA
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Coding sequence (CDS) from alignment at chr30:9452..11397+

>NO30G00030.3 ID=NO30G00030.3|Name=NO30G00030.3|organism=Nannochloropsis oceanica|type=CDS|length=1629bp|location=Sequence derived from alignment at chr30:9452..11397+ (Nannochloropsis oceanica)
ATGCAGGATCACATGACGGCATTTCCCAAAAGCGAATGGAAACTGCGTTT
TTATCAATCAATCCTACTGTCGAGCGTATGTATAATGATGCTGGAAAGTC
GCGAAAGGTTAAAAATGGCTGACTTCACAATTTCTGGTATTAAAAATAAT
GACCTTCGAAACCCTGCTCGGGGAGATGAAAATTCCGAGGTGGAACAGCA
CGCTTATGGTTTTCGAACGCTGATTGATGAGTATCGTACTCTCTGGACCG
CGGGGTGGAACGCGCGATACGCCAAATACTACCTACCGGTGCCACCAAAA
GTAACGTGGGCACTGGAGGCTGAGGACATTGTTGAGAGAGAGTATCGTCG
TTTGCATTTCCCTGCCCACTGCAGCGATGTCAATGGGTGGCTGGTTGTCA
ATGCATACAATTGGGGCGTTATGTCGGCGATGCGGGACTATCAATCTGAT
ATTCTGCGAGCCTTGGCCATGAACTACACAGTAGTGCATCAAGGAGTATA
CAATTTGTGTCCTTCAAATCCGCAGCAATTTTTAGACTGTTTTTGGGAGG
ACTTGAATGCCTGTCAATCTGAGTTTCCTTCCCTTTTAAGCGTTCCCAGA
ATAAACCAACCCCAGGAAATTACCACATCGGCAGTGTTCCATGAACAATT
CCCGCATTGGCTGTGGAATCTATTGGTTGACAAGGGGGCCATACACCTAC
AGCATGGACTGACGGGTGCAACACTGACGGAAGAGGACATTGTGGATGAG
GATCAATATCTTCAACTCAAGCTATCTGTGTTAAGAGCAATTCTTAGCAA
AAGAATCTTCAAGCCGAGGAAGCATATCCAGCGAAAGACTTTGGCGATGC
TTAAGTCGTGGAGATCGAATGGAAGCTACGCAAATACATCCGAAAAAGGC
GTAGTGATTCACATCCGTCGCACTGATAAGATGAGTGACTTAGGGGCTCA
TTGGCACTATATCGACTTTGAGTCCACTGCACACTTAGGGCGCCTAGTTC
AGACGATGGAAAATATGATCAACAGTACTTTCCAGCATTTTTTTGTCATG
TCCGATGACCCCATCATGCAAAAGCGTGGTACCAAGGAGCTTGCTTCCTT
TTTCCAGGCCAATCCTTCAAATCTTGTTAGTACCGAGCTCTGCGATCTGT
TGGGAGCCAATCGGTTGGAGTACGACGGCCACGAATCGCTTGCGGCAGCT
CACCGTCACCAGCTATATGATATTGTTGTCGCAGAAATGTACGCCGCTAT
CGAAGTTTCTCAGTACATCATTGGGTCTGGTTCCTGTGCCGTTAGCCAGT
TCATGGCTCTTAACATTGGGGCAAGACACCGCGTCGGTAGGTCGGATAAA
TATTTACTTGCCACTCTTCTCATGTACGTAACTCCACTTTTTCTTCGTCC
TACAGAACCAGGCCTTGTAGCTCTTTGGGAGGAAGACTTAATCATAAAGG
AATGTCGCTTGCTTCTTCATCAGCGAATGAGTTTGCACAAACCGTGTAAC
GCTTCATCGTACTTGGAGCGGTCAAGCAGCAAACCCTTATTTCAAACGTT
CTTAGACGGGCAATGGAATGACAAGACATGCCTCCAATTCTTGCCCCCCT
TGCCAAACTGTTTTGGTGATGCAGGATGA
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Synonyms
Publications