NO03G05780, NO03G05780 (gene) Nannochloropsis oceanica

Overview
NameNO03G05780
Unique NameNO03G05780
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length816
Alignment locationchr3:1657752..1658567 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1657752..1658567 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO03G05780 vs. NCBI_GenBank
Match: EWM30052.1 (hypothetical protein Naga_100225g2 [Nannochloropsis gaditana])

HSP 1 Score: 258.8 bits (660), Expect = 1.800e-65
Identity = 139/219 (63.47%), Postives = 159/219 (72.60%), Query Frame = 0 
Query:   52 SSLGATAAALVGLAPASNAAS------PPSSDTRIGLEGGPTRREKSRPALLEALVYLPKGVNYWGELL-----AGPDEXXXXXXXXXXXXXGTGTEALFLTASFQGKLVLGARVPMEGMIFPFLAQFYEGNILGGDGGWQEAKAQDLVVRARVCATGEYPPCGTPLLKAASISKFLPEIRDPNNPMSEEIIARNVRIGASLMLQPVNEATTLERMQMV 260
            +SL  T  AL+GL P  + AS      PPS    +  EG PT REK RP LLEALVYLPKGVNYWG+LL     + PD              GTGTEALFLTASFQ KL+LGARVPM+G++FPFLAQFYE NILGG   W+  K++DLVVRARVC TG YPPC  PLLKAAS+SKF PE+RDPN P S E+IARNVRIGASLMLQPV E+TTLERM+++
Sbjct:   57 ASLAVTPVALLGLMPPVSVASSTTRTAPPSLPREV--EGRPTLREKGRPPLLEALVYLPKGVNYWGQLLPESKNSAPDS---------IAIAGTGTEALFLTASFQNKLILGARVPMQGIMFPFLAQFYEDNILGGKNIWEGVKSKDLVVRARVCPTGSYPPCNVPLLKAASLSKFFPEVRDPNTPESAEVIARNVRIGASLMLQPVTESTTLERMRVM 264
The following BLAST results are available for this feature:
BLAST of NO03G05780 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30052.11.800e-6563.47hypothetical protein Naga_100225g2 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL069nonsL069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR054ngnoR054Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005287NSK005287Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G05780.1NO03G05780.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573495gene_1791Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100225g2gene595Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G05780.1NO03G05780.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G05780 ID=NO03G05780|Name=NO03G05780|organism=Nannochloropsis oceanica|type=gene|length=816bp
ATGCGCAACGACCTCCTTCCCTGCTTGACGCTTCTGCTTCTCTCGATTAT
TATCACCACCGTCTTGGCCTACTCTCCACCGCAAGGTCCATTCCGCGCTC
ATCTTTTATCTCTTTCGCCGGTCTCATATACTCGCGCTTCGTTTTTGACC
GATTCATCTCTGGGTGCGACCGCTGCTGCCTTGGTAGGGCTTGCTCCCGC
CTCGAACGCAGCTTCCCCTCCCTCCTCCGATACGCGGATAGGTCTAGAAG
GCGGGCCCACGAGGCGTGAGAAGAGCCGGCCTGCCTTGCTGGAGGCTTTA
GTATACCTACCCAAAGGCGTGAACTATTGGGGCGAGCTCTTGGCTGGCCC
CGACGAGGAGGAGCAGGAGGATGATGGCTCTATGTCTAGCAGCGCTGGCA
CTGGCACGGAAGCCCTCTTTCTGACGGCCTCCTTCCAAGGCAAACTCGTG
CTGGGTGCCCGAGTGCCGATGGAAGGGATGATATTCCCTTTCCTGGCACA
GTTCTATGAAGGCAACATCCTGGGCGGCGATGGCGGGTGGCAGGAGGCCA
AGGCCCAGGACTTGGTGGTGCGTGCCCGTGTATGTGCCACGGGCGAGTAT
CCTCCCTGCGGCACGCCCCTTCTCAAGGCGGCCTCCATTTCTAAGTTCCT
GCCCGAGATTCGCGATCCCAATAATCCTATGAGCGAGGAGATTATTGCTC
GGAACGTTCGCATTGGCGCGAGTTTGATGCTGCAGCCTGTGAATGAGGCC
ACGACGCTGGAGAGGATGCAGATGGTCAAAGACAGCACGGGGGATGAGGG
CGGCGGTAGAAGATGA
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protein sequence of NO03G05780.1

>NO03G05780.1-protein ID=NO03G05780.1-protein|Name=NO03G05780.1|organism=Nannochloropsis oceanica|type=polypeptide|length=272bp
MRNDLLPCLTLLLLSIIITTVLAYSPPQGPFRAHLLSLSPVSYTRASFLT
DSSLGATAAALVGLAPASNAASPPSSDTRIGLEGGPTRREKSRPALLEAL
VYLPKGVNYWGELLAGPDEEEQEDDGSMSSSAGTGTEALFLTASFQGKLV
LGARVPMEGMIFPFLAQFYEGNILGGDGGWQEAKAQDLVVRARVCATGEY
PPCGTPLLKAASISKFLPEIRDPNNPMSEEIIARNVRIGASLMLQPVNEA
TTLERMQMVKDSTGDEGGGRR*
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Synonyms
Publications