NO03G05010, NO03G05010 (gene) Nannochloropsis oceanica

Overview
NameNO03G05010
Unique NameNO03G05010
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2226
Alignment locationchr3:1422068..1424293 +

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Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1422068..1424293 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of NO03G05010 vs. NCBI_GenBank
Match: XP_005853869.1 (hypothetical protein NGA_0452500 [Nannochloropsis gaditana CCMP526] >EKU22490.1 hypothetical protein NGA_0452500 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 197.6 bits (501), Expect = 1.200e-46
Identity = 105/164 (64.02%), Postives = 126/164 (76.83%), Query Frame = 0
Query:   91 EERPWVPGEELRYWAVTRTLRLALFVAFVGLVRSVLSSQAIFYLVLWVASLTTMASMTYQRVRERGLLTYLPPSTQELLLQTSLLDWLLDTSMADRLKPYAVIGMGLNEEERSFLISSLPPPEQRALTAPGLLNTLPASVQSMLLPRGGCSDAGGMLMSGGNAC 255
            EE PW  GEE R WAV +TLR     A  GL+ S LSSQAIF+LVL +ASL ++ S+TYQR+R+RG+LTYLP STQ LL+ TSLLDWLLD+S+ADRLKPYAV+ +GLNEEER+FLI+SLPP EQRALTAPG+L+ LP  VQ+ LLPR    + GG    GG  C
Sbjct:   97 EEPPWTLGEEFRSWAVEQTLRTTFLFAVAGLITSFLSSQAIFFLVLALASLASLVSLTYQRIRDRGVLTYLPASTQRLLMHTSLLDWLLDSSLADRLKPYAVMSLGLNEEERAFLINSLPPAEQRALTAPGILHVLPPPVQAFLLPR-PMGNRGG--REGGREC 257          
BLAST of NO03G05010 vs. NCBI_GenBank
Match: EWM29935.1 (hypothetical protein Naga_100351g7 [Nannochloropsis gaditana])

HSP 1 Score: 157.9 bits (398), Expect = 1.000e-34
Identity = 83/125 (66.40%), Postives = 102/125 (81.60%), Query Frame = 0
Query:  130 AIFYLVLWVASLTTMASMTYQRVRERGLLTYLPPSTQELLLQTSLLDWLLDTSMADRLKPYAVIGMGLNEEERSFLISSLPPPEQRALTAPGLLNTLPASVQSMLLPRGGCSDAGGMLMSGGNAC 255
            AIF+LVL +ASL ++ S+TYQR+R+RG+LTYLP STQ LL+ TSLLDWLLD+S+ADRLKPYAV+ +GLNEEER+FLI+SLPP EQRALTAPG+L+ LP  VQ+ LLPR    + GG    GG  C
Sbjct:   22 AIFFLVLALASLASLVSLTYQRIRDRGVLTYLPASTQRLLMHTSLLDWLLDSSLADRLKPYAVMSLGLNEEERAFLINSLPPAEQRALTAPGILHVLPPPVQAFLLPR-PMGNRGG--REGGREC 143          
BLAST of NO03G05010 vs. NCBI_GenBank
Match: XP_008911006.1 (hypothetical protein PPTG_15974 [Phytophthora parasitica INRA-310] >ETN03779.1 hypothetical protein PPTG_15974 [Phytophthora parasitica INRA-310])

HSP 1 Score: 86.7 bits (213), Expect = 3.000e-13
Identity = 45/91 (49.45%), Postives = 60/91 (65.93%), Query Frame = 0
Query:  152 VRERGLLTYLPPSTQELLLQTSLLDWLLDTSMADRLKPYAVIGMGLNEEERSFLISSLPPPEQRALTAPGLLNTLPASVQSMLLPRGGCSD 243
            +R RGL+ +LP S QELLLQTSLL+WL DTS +D++ P+    + L   E+  L+  +PP  Q  +T PGLL  LP SVQ++LLP    SD
Sbjct:    1 MRTRGLVGFLPKSLQELLLQTSLLEWLTDTSFSDKVAPFLPFLLPLTRAEQMKLLEQMPPESQVMMTKPGLLPLLPDSVQNVLLPAEDSSD 91          
BLAST of NO03G05010 vs. NCBI_GenBank
Match: XP_009516811.1 (hypothetical protein PHYSODRAFT_476527, partial [Phytophthora sojae] >EGZ29536.1 hypothetical protein PHYSODRAFT_476527, partial [Phytophthora sojae])

HSP 1 Score: 85.5 bits (210), Expect = 6.600e-13
Identity = 43/87 (49.43%), Postives = 57/87 (65.52%), Query Frame = 0
Query:  150 QRVRERGLLTYLPPSTQELLLQTSLLDWLLDTSMADRLKPYAVIGMGLNEEERSFLISSLPPPEQRALTAPGLLNTLPASVQSMLLP 237
            +  R RGL+ +LP S QELLLQTSLL WL DTS +D++ P+    + L+  E+  L+  +PP  Q  LT PGLL  LP S+Q +LLP
Sbjct:   24 EEARTRGLIGFLPQSAQELLLQTSLLKWLTDTSFSDKVAPFLPFLLPLSRAEQMRLMEQMPPESQMMLTKPGLLPLLPDSMQKVLLP 110          
BLAST of NO03G05010 vs. NCBI_GenBank
Match: CBN79235.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 84.7 bits (208), Expect = 1.100e-12
Identity = 50/116 (43.10%), Postives = 70/116 (60.34%), Query Frame = 0
Query:  121 LVRSVLSSQAIFYLVLWVASLTTMASMTYQRVRERGLLTYLPPSTQELLLQTSLLDWLLDTSMADRLKPYAVIGMGLNEEERSFLISSLPPPEQRALTAPGLLNTLPASVQSMLLP 237
            LV SV S  A+ +L +    +  M       VR+RG L YLP    ELL +T+LL++L DTS+ D +K Y V  MGL+E+E   +++SLP   Q  LT PG+++TLP   Q +LLP
Sbjct:  113 LVVSVFSGSALVFLAVIAIGVCGMC----YSVRQRGALEYLPSGVTELLTRTTLLEFLTDTSVFDAIKTYLVFMMGLSEDETQGVLASLPEDMQYTLTRPGIMHTLPRPFQDLLLP 224          
BLAST of NO03G05010 vs. NCBI_GenBank
Match: ETK79339.1 (hypothetical protein L915_14799, partial [Phytophthora parasitica] >ETL32751.1 hypothetical protein L916_14713, partial [Phytophthora parasitica] >ETP09068.1 hypothetical protein F441_15068, partial [Phytophthora parasitica CJ01A1])

HSP 1 Score: 84.3 bits (207), Expect = 1.500e-12
Identity = 58/139 (41.73%), Postives = 79/139 (56.83%), Query Frame = 0
Query:  112 LALFVAFVGLVRSVLSSQAIFYLV-LWVASLTTMASMT-------YQRVRERGLLTYLPPSTQELLLQTSLLDWLLDTSMADRLKPYAVIGMGLNEEERSFLISSLPPPEQRALTAPGLLNTLPASVQSMLLPRGGCSD 243
            L +  A   L+   LS +A   LV L  ASL  + S +        + +R RGL+ +LP S QELLLQTSLL+WL DTS +D++ P+    + L   E+  L+  +PP  Q  +T PGLL  LP SVQ++LLP    SD
Sbjct:  115 LTVTFALTVLLTEFLSRRATLALVALAYASLGLLYSWSVPVWKWYQEEMRTRGLVGFLPESLQELLLQTSLLEWLTDTSFSDKVAPFLPFLLPLTRAEQMKLLEQMPPESQVMMTKPGLLPLLPDSVQNVLLPAEDSSD 253          
BLAST of NO03G05010 vs. NCBI_GenBank
Match: ETL86018.1 (hypothetical protein L917_14518, partial [Phytophthora parasitica])

HSP 1 Score: 84.3 bits (207), Expect = 1.500e-12
Identity = 58/139 (41.73%), Postives = 79/139 (56.83%), Query Frame = 0
Query:  112 LALFVAFVGLVRSVLSSQAIFYLV-LWVASLTTMASMT-------YQRVRERGLLTYLPPSTQELLLQTSLLDWLLDTSMADRLKPYAVIGMGLNEEERSFLISSLPPPEQRALTAPGLLNTLPASVQSMLLPRGGCSD 243
            L +  A   L+   LS +A   LV L  ASL  + S +        + +R RGL+ +LP S QELLLQTSLL+WL DTS +D++ P+    + L   E+  L+  +PP  Q  +T PGLL  LP SVQ++LLP    SD
Sbjct:  115 LTVTFALTVLLTEFLSRRATLALVALAYASLGLLYSWSVPVWKWYQEEMRTRGLVGFLPESLQELLLQTSLLEWLTDTSFSDKVAPFLPFLLPLTRAEQMKLLEQMPPESQVMMTKPGLLPLLPDSVQNVLLPAEDSSD 253          
BLAST of NO03G05010 vs. NCBI_GenBank
Match: KUF66913.1 (hypothetical protein AM587_10016189 [Phytophthora nicotianae])

HSP 1 Score: 84.3 bits (207), Expect = 1.500e-12
Identity = 58/139 (41.73%), Postives = 79/139 (56.83%), Query Frame = 0
Query:  112 LALFVAFVGLVRSVLSSQAIFYLV-LWVASLTTMASMT-------YQRVRERGLLTYLPPSTQELLLQTSLLDWLLDTSMADRLKPYAVIGMGLNEEERSFLISSLPPPEQRALTAPGLLNTLPASVQSMLLPRGGCSD 243
            L +  A   L+   LS +A   LV L  ASL  + S +        + +R RGL+ +LP S QELLLQTSLL+WL DTS +D++ P+    + L   E+  L+  +PP  Q  +T PGLL  LP SVQ++LLP    SD
Sbjct:  113 LTVTFALTVLLTEFLSRRATLALVALAYASLGLLYSWSVPVWKWYQEEMRTRGLVGFLPESLQELLLQTSLLEWLTDTSFSDKVAPFLPFLLPLTRAEQMKLLEQMPPESQVMMTKPGLLPLLPDSVQNVLLPAEDSSD 251          
BLAST of NO03G05010 vs. NCBI_GenBank
Match: ETI39124.1 (hypothetical protein F443_15257, partial [Phytophthora parasitica P1569] >ETM39172.1 hypothetical protein L914_14657, partial [Phytophthora parasitica])

HSP 1 Score: 83.6 bits (205), Expect = 2.500e-12
Identity = 58/139 (41.73%), Postives = 78/139 (56.12%), Query Frame = 0
Query:  112 LALFVAFVGLVRSVLSSQAIFYLV-LWVASLTTMASMT-------YQRVRERGLLTYLPPSTQELLLQTSLLDWLLDTSMADRLKPYAVIGMGLNEEERSFLISSLPPPEQRALTAPGLLNTLPASVQSMLLPRGGCSD 243
            L +  A   L+   LS +A   LV L  ASL  + S +        + +R RGL+ +LP S QELLLQTSLL+WL DTS +D++ P+    + L   E+  L+  +PP  Q  +T PGLL  LP SVQ+ LLP    SD
Sbjct:  115 LTVTFALTVLLTEFLSRRATLALVALAYASLGLLYSWSVPVWKWYQEEMRTRGLVGFLPKSLQELLLQTSLLEWLTDTSFSDKVAPFLPFLLPLTRAEQMKLLEQMPPESQVMMTKPGLLPLLPDSVQNALLPAEDSSD 253          
BLAST of NO03G05010 vs. NCBI_GenBank
Match: ETO67878.1 (hypothetical protein F444_15244, partial [Phytophthora parasitica P1976])

HSP 1 Score: 83.6 bits (205), Expect = 2.500e-12
Identity = 58/139 (41.73%), Postives = 78/139 (56.12%), Query Frame = 0
Query:  112 LALFVAFVGLVRSVLSSQAIFYLV-LWVASLTTMASMT-------YQRVRERGLLTYLPPSTQELLLQTSLLDWLLDTSMADRLKPYAVIGMGLNEEERSFLISSLPPPEQRALTAPGLLNTLPASVQSMLLPRGGCSD 243
            L +  A   L+   LS +A   LV L  ASL  + S +        + +R RGL+ +LP S QELLLQTSLL+WL DTS +D++ P+    + L   E+  L+  +PP  Q  +T PGLL  LP SVQ+ LLP    SD
Sbjct:  115 LTVTFALTVLLTEFLSRRATLALVALAYASLGLLYSWSVPVWKWYQEEMRTRGLVGFLPKSLQELLLQTSLLEWLTDTSFSDKVAPFLPFLLPLTRAEQMKLLEQMPPESQVMMTKPGLLPLLPDSVQNALLPAEDSSD 253          
The following BLAST results are available for this feature:
BLAST of NO03G05010 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005853869.11.200e-4664.02hypothetical protein NGA_0452500 [Nannochloropsis ... [more]
EWM29935.11.000e-3466.40hypothetical protein Naga_100351g7 [Nannochloropsi... [more]
XP_008911006.13.000e-1349.45hypothetical protein PPTG_15974 [Phytophthora para... [more]
XP_009516811.16.600e-1349.43hypothetical protein PHYSODRAFT_476527, partial [P... [more]
CBN79235.11.100e-1243.10conserved unknown protein [Ectocarpus siliculosus][more]
ETK79339.11.500e-1241.73hypothetical protein L915_14799, partial [Phytopht... [more]
ETL86018.11.500e-1241.73hypothetical protein L917_14518, partial [Phytopht... [more]
KUF66913.11.500e-1241.73hypothetical protein AM587_10016189 [Phytophthora ... [more]
ETI39124.12.500e-1241.73hypothetical protein F443_15257, partial [Phytopht... [more]
ETO67878.12.500e-1241.73hypothetical protein F444_15244, partial [Phytopht... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL069nonsL069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR054ngnoR054Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005381NSK005381Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G05010.1NO03G05010.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|627006gene_1708Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100351g7gene705Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G05010.1NO03G05010.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G05010 ID=NO03G05010|Name=NO03G05010|organism=Nannochloropsis oceanica|type=gene|length=2226bp
ATGTCACAATGCAAGCGGCTCCTAGACGATTCGGGAGACGGTGGGCCGCG
AGCTTCATCAACAGCAGCAGCAGAGGTCGGGGCAGCGGGGGGAGATGGGC
AGCAGCAGCAGCAACAGCAAAACGGAGGAGGCCAGATGTCCGACACAACA
ACTACAGTTAGAAGCAGCACCACCAACAACGGCAGAGGCCTTATGACACG
CCGACAGGGCGACGGGCAAGGCAGTGGAAACAATTGGGGTGGGAACGACG
AAGAGGAGGATGGGCAAGGGGAAGAGCGCCCGTGGGTGCCAGGGGAGGAA
CTAAGGTATTGGGCCGTGACTCGAACACTGCGTCTCGCACTCTTCGTGGC
GTTCGTGGGCTTGGTACGCTCTGTCTTATCGTCGCAGGCCATATTCTACC
TCGTCCTGTGGGTGGCGTCTCTGACGACCATGGCCTCGATGACTTACCAA
CGTGTGCGGGAACGAGGCCTGCTCACCTACCTGCCCCCCTCGACCCAAGA
ACTCCTCCTGCAGACCTCGCTGCTGGACTGGCTCCTCGACACATCCATGG
CTGATCGTCTGAAGCCATATGCCGTCATCGGGATGGGATTGAATGAGGAG
GAACGCTCCTTTCTCATCAGCAGTCTTCCTCCACCGGAGCAACGAGCTTT
GACGGCGCCTGGTTTATTGAACACCTTGCCGGCTTCCGTGCAAAGCATGC
TCCTGCCACGCGGTGGTTGCAGCGATGCCGGTGGCATGCTCATGTCAGGA
GGGAACGCATGTGTACCGGCAACACCAGCTGCGGCATGTATCGCGACTGC
TGCTTCTGCTGGAGGTGGAGGAGAGGGGAGGGAAGGATGGCGACATCGCA
TTGAGGAGATCAGTGAGATGCAAGCCGCGGAGATGACCCGTCGACGACTA
CAAGAAATGGACGAGCGACGACAGCGGGAGGAAGGGAGGGAGGGAGAGGA
GGAAGCGGAGGAAGTGATGACGGCATCTGAGACAGACGAAGAGGACGAGT
ACCTGGACGAGCAGGAGGACGGGGGGGAGAGCGGGCGGAGGAGTAGTAAT
CGGATGACGCATCAGTTGCCGCGACAGGTGGGCATGGCTATGGGCAGAAA
TCCGCAGCGGCGAACACCACAGCAAGGCAACGGCCTCCGGCCGGCTTTTC
CCCTCTCCTCTACCTCCTACCACCACCACCACCAGCAAAACAGCAGCAGC
AGGAACACCCGCACCCTCACCACCGACACTACCACCCAATCTCCTCCTCC
TCCTCCTCTTTCTCGGCCAGTGTCAGAAAGCTGGCCCGCTCCCGGGGAAG
TTGAAGATGTCGCTGCCTACGTTCTTCAACGGCGCCTCCGCCGCGCCTGG
GAGCAAGCGGTGCGAGGAAGCGCAGATGCGATCGTCAGTGGAGTAACAGC
CAGCTTGAGAAGGCAATTGAGGGATAGACGGCAGGGGTTAGTATACGGAG
GGGTGGCCTTGGCGGGGGGGGCGGTAGTGGCGCAGATTTGGCGAGGGAGG
GGAGGGGGGGCGGGAGGGGTAGTGCAGCGGTATGGGCGGATGGCAGTTTT
AGCAGGGACGGTGGTCTTGGCTTTGCATGATGCATATTTTGCCTCAAAGG
AGGAGGAGGAAGAGGGGGAGGAGGAGGAGGAGGAAAGTGCAGAGGGATTA
TGGGAGGAGGAGGAGGGCGAGGAGGGCTTGCTTGGCGCTGATTTTGCCGC
TGGTGTGAGCATGGGCCAACAACGACGAGGACGAGGACGAGGACAAGGAC
GACCTCGACAACAGCAGCCTCGGGTATGGATGCAGTGGGGGGCTTTCTTT
TTCCTCCTCCTCCTCATTCGCACCGGTCGCCTGGCGCCGATATTGCGGCG
TTTGCGGGCGGCCTTTCCGGCTTCCTTCCCCTCGTCCTCCTCGTCTTCCT
CCTCCTCCTCCTTGCTGTTGGGTGCGAGCGGACGGAGGTAGACATAGGGA
ATGATAAATATTGGATTCGTATGTATGTGTAGGTGGGAAGATGTGAATAA
TCAAAAGAAACGACACGACAGCTTTTGCCGTTACGCGCATTGAGGGTGCT
TCCCAACCATGCCGTCTGCAGTATGTGCCTGCCATGACCCAGCGAGTCAC
CCGAGCAATCAAAGTATTTTCAGGCGAGGGAGAAAGGAAAAGACGAGCTC
CACTTCGCACAGGCGTGGCCCTCGTTTGCGGGCAACAAAAGAAAGAAAGA
GGGAGACGCGCGTTCAGCGAGACAAA
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protein sequence of NO03G05010.1

>NO03G05010.1-protein ID=NO03G05010.1-protein|Name=NO03G05010.1|organism=Nannochloropsis oceanica|type=polypeptide|length=647bp
MSQCKRLLDDSGDGGPRASSTAAAEVGAAGGDGQQQQQQQNGGGQMSDTT
TTVRSSTTNNGRGLMTRRQGDGQGSGNNWGGNDEEEDGQGEERPWVPGEE
LRYWAVTRTLRLALFVAFVGLVRSVLSSQAIFYLVLWVASLTTMASMTYQ
RVRERGLLTYLPPSTQELLLQTSLLDWLLDTSMADRLKPYAVIGMGLNEE
ERSFLISSLPPPEQRALTAPGLLNTLPASVQSMLLPRGGCSDAGGMLMSG
GNACVPATPAAACIATAASAGGGGEGREGWRHRIEEISEMQAAEMTRRRL
QEMDERRQREEGREGEEEAEEVMTASETDEEDEYLDEQEDGGESGRRSSN
RMTHQLPRQVGMAMGRNPQRRTPQQGNGLRPAFPLSSTSYHHHHQQNSSS
RNTRTLTTDTTTQSPPPPPLSRPVSESWPAPGEVEDVAAYVLQRRLRRAW
EQAVRGSADAIVSGVTASLRRQLRDRRQGLVYGGVALAGGAVVAQIWRGR
GGGAGGVVQRYGRMAVLAGTVVLALHDAYFASKEEEEEGEEEEEESAEGL
WEEEEGEEGLLGADFAAGVSMGQQRRGRGRGQGRPRQQQPRVWMQWGAFF
FLLLLIRTGRLAPILRRLRAAFPASFPSSSSSSSSSSLLLGASGRR*
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Synonyms
Publications