NO03G04490, NO03G04490 (gene) Nannochloropsis oceanica

Overview
NameNO03G04490
Unique NameNO03G04490
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2022
Alignment locationchr3:1290725..1292746 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1290725..1292746 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR001611Leu-rich_rpt
Homology
The following BLAST results are available for this feature:
BLAST of NO03G04490 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL069nonsL069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL066nonsL066Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR054ngnoR054Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR048ngnoR048Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G04490.2NO03G04490.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO03G04490.1NO03G04490.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572998gene_1651Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G04490.2NO03G04490.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO03G04490.1NO03G04490.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G04490 ID=NO03G04490|Name=NO03G04490|organism=Nannochloropsis oceanica|type=gene|length=2022bp
AGCCTACGTCCCCACTCCAATCACGCCACAACGACCAAACCAAAGCTCAA
GTCCCATGGTCTTCGCAAAACAGTACACGCGAAAAGATCTTGCCATCACG
GCGCCCACTGCAGGGCCTCGCGAAGTTGCTTCCCGCTCCTCTTCCCGAGT
GTTTGCCTCCCTCATGGGCATCGACGGCCTGTTTGACAACCACATTTCCC
CCGCCCTTGCCACCCGGGAGCTTCTCCGCCTGTCCGCGGCCTGCAAAGAG
CTGCAGAAGCCTGCCCGTGCCCTTGTTACAGAAGTGTGCATCCGTCGAGA
TATTGTACGTCGAAGCGCCGTCCCCCGCGCGGTGCGAATAGGCCTTCCCC
TCCTCCCTGGCCTTCGTGTCCTAGACCTGTCCTTCGTTTCCCTCGCTCCG
CGCGACTATACCGCCATGGCCAGTGCATTGCTCTCGCCTGGGACAAGAAC
AAATGCGCGGCTGAAGACTTTTCGCTTGAGGCAACGGGCGGGGTATTCAC
CTGGTCCAATTCCTCGGgtaaggtttgggtaaagtatgttggtcgacagc
acctacagcagcagcagcagtagtagcttcaccgccaataccactacttt
catattatcacctaactgcgtatgtacactttcaaaaacaaacaaataaa
gaagaaaatgctaccttccctcctcttaccccgacgataaaaacaaaaca
gGAGTCAGATCTGTGCCTGCTTCGTTTTTTCCAAGCCGTTGTGGCCACGC
AGGCCTGGCCTCTACTAGAAGATTTAGACCTATCAGGGCACTGCATAGGC
GATGCTGCTGTCGAGCTTTTGGTGTCCTGGATGGAAGGTACTGCGGGGGG
CAGCAGCAGCAGCAGCGGTCAATGGCAGCAGCGTCGGTTGAAGCGCCTCG
GTCTGAGTACCATTAACATGTCGGAGGTAGGCTTGATGCATCTACTAAAG
CCATTGGCGAAGGGAAAATGTCCCGTTTTGTTGCGCATGGACCTCTCCGG
GAATTCTTGTGGAAGCAGTGGTGGTGGGGGTGATGGAGGAGGAGACATGG
AGGGAGTAGGAGGCGTAGGGGAAGGGACGAAGAGGAAGTACAAGGAGGCC
CTGTGGACGGCAGCGTTGTGCGGAATGCCGCATTTGCTGGAGCTGGATTT
GAACGAGAGTGGGGTGGAGGGAGAGGTCACACTAGCCTTGGCTCGATCCT
TGACTCAAGGCGCCGGGCGGAAGATGAAGCGATTGTCGCTGGGTGGATGT
TCTCTGACGGATCAGGATACCCGGAAATTGTGGGAGGTCGTGAGGGGAGG
AGGAGTGCCGTGGCTACAGGACCTGAATTTGAGGCAAGCATGCTTAGAGA
GAGAGGCTTTCATGGGGTTGGCGGCTGGGCTGGAAAGAGGGCGCTTGAGG
TATCTGCGACGTTTGGACTTGTCGGAAAATCTGTTGACGTATGAAGgtag
attgcatcctccctcactacccctctattcctattcccctatttttttgc
tttactttccacacgccccgttctcgataggtgccagctaagccatgctt
gctgacgtcctccttcccttcctcccttcccctctccctcccttcccccc
tcactcctttcctccctccctccttcccagGCATGCAAGACATCGTGAAG
GCCCTCCAAAATGGAGCAGCGCCACAGCTCCGTTCACTCTGCTTGGGCAG
CACTGGGCATGAATTCGAAGAAGTGAATGAGATGGTGGGACTGTGGTGTG
CCAAGCTGAAGAATGACGGAAATTGTCCTCAGTTGGTGCTCCAAAGCAAG
GAGGAAGGGAAGGGGGGAGGAGAGGGGGGAGGGGTTGTCTCGATGGAGGT
GGAAGAAGACAAGGAAGAGGAGGAGGTAGAGCAGGAGGAGAAGGAGAACA
AAGGAAATAAGGCCGGTGGAGCGGCTAACGCTCGAAAGTGGGTGAAAGCG
TGTGTCAGTGCATGACATGACGCTGACGAGACACAGGAAACCCTGCGAGG
CACTCAAAGAACCAGAGAAGAG
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protein sequence of NO03G04490.2

>NO03G04490.2-protein ID=NO03G04490.2-protein|Name=NO03G04490.2|organism=Nannochloropsis oceanica|type=polypeptide|length=434bp
MVFAKQYTRKDLAITAPTAGPREVASRSSSRVFASLMGIDGLFDNHISPA
LATRELLRLSAACKELQKPARALVTEVCIRRDIVRRSAVPRAVRIGLPLL
PGLRVLDLSFVSLAPRDYTAMASALLSPGTRTNARLKTFRLRQRAGYSPG
PIPRESDLCLLRFFQAVVATQAWPLLEDLDLSGHCIGDAAVELLVSWMEG
TAGGSSSSSGQWQQRRLKRLGLSTINMSEVGLMHLLKPLAKGKCPVLLRM
DLSGNSCGSSGGGGDGGGDMEGVGGVGEGTKRKYKEALWTAALCGMPHLL
ELDLNESGVEGEVTLALARSLTQGAGRKMKRLSLGGCSLTDQDTRKLWEV
VRGGGVPWLQDLNLRQACLEREAFMGLAAGLERGRLRYLRRLDLSENLLT
YEGRLHPPSLPLYSYSPIFLLYFPHAPFSIGAS*
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protein sequence of NO03G04490.1

>NO03G04490.1-protein ID=NO03G04490.1-protein|Name=NO03G04490.1|organism=Nannochloropsis oceanica|type=polypeptide|length=514bp
MVFAKQYTRKDLAITAPTAGPREVASRSSSRVFASLMGIDGLFDNHISPA
LATRELLRLSAACKELQKPARALVTEVCIRRDIVRRSAVPRAVRIGLPLL
PGLRVLDLSFVSLAPRDYTAMASALLSPGTRTNARLKTFRLRQRAGYSPG
PIPRESDLCLLRFFQAVVATQAWPLLEDLDLSGHCIGDAAVELLVSWMEG
TAGGSSSSSGQWQQRRLKRLGLSTINMSEVGLMHLLKPLAKGKCPVLLRM
DLSGNSCGSSGGGGDGGGDMEGVGGVGEGTKRKYKEALWTAALCGMPHLL
ELDLNESGVEGEVTLALARSLTQGAGRKMKRLSLGGCSLTDQDTRKLWEV
VRGGGVPWLQDLNLRQACLEREAFMGLAAGLERGRLRYLRRLDLSENLLT
YEGMQDIVKALQNGAAPQLRSLCLGSTGHEFEEVNEMVGLWCAKLKNDGN
CPQLVLQSKEEGKGGGEGGGVVSMEVEEDKEEEEVEQEEKENKGNKAGGA
ANARKWVKACVSA*
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Synonyms
Publications