NO03G04160.1, NO03G04160.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO03G04160.1
Unique Name	NO03G04160.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1937
Alignment location	chr3:1204325..1206783 +

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr3	genome	chr3:1204325..1206783 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO03G04160.1 vs.
Match: EWM29884.1 (meiotic recombination 11 [Nannochloropsis gaditana])

HSP 1 Score: 617.8 bits (1592), Expect = 3.600e-173
Identity = 331/466 (71.03%), Postives = 358/466 (76.82%), Query Frame = 0

Query:  159 LLEPPDENTLRIMIATDNHVGFLERDPVRGPDSFAALEEIFLRAKEYHVDFVLLGGDLFHDNKPSRKTMHSTISILRRHCLGDDPVSFQVISEPPPQG-GTEGTMDGMNKVGNFAHVNYEDPNYAVGLPIFSIHGNHDDPSRDGNTEPLSAMDLLSVTNLVNYFGKASATDNVEVSPLLLRKGGTLMALYGLGNMRDERLNRMWQKKKIRFLRHRPTGRDEEQKDFFSLFALHQNRDTGRGQKNCVQESMIPEWMDLVVWGHEHECLVRPTRSLAGGFFISQPGSSVATSLVEGEATPKQVGVLDVREGNFRLFPVLLRQVRPFILKAIRLSAIEGLDPNHPKVEEHVTLVLEKQVWALIEEAREEHPPPGPLPGQTFSLLHPEQVLVRLKVEYTGFFTINNQRFGQRFVGHVANPSDILLFHKARRLGGREEEEEEEGGGGGRGGRAGGGGMNGVEGKEGGREGR 624
            LLEPPDE+TLR+MIATDNHVGFLERDPVRG DSFAALEEIFLRAKEYHVDFVLLGGDLFH+NKPSRKT+HST++ILRRHCLG  PVSFQVIS+P PQG G E +         F+HVNYEDPNYAVGLP+FSIHGNHDDP+RDG +EPLSAMDLL +TNLVNYFGKASATD VEV+PLLL+KG T MALYGLGNMRDERLNRMWQKKKI+FLRH P  R     DFFSLFALHQNRDTGRGQKNCVQESMIPEWMDLVVWGHEHECLVRPTRSLAGGF+ISQPGSSVATSLVEGEATPKQVGVLDVREGNFRLFPV LRQVR FILK +RLSA+ GLDP+HP+ EE V   LE++V ALI EARE+HPPP P P    +   P   L   +    GF           F G    P     F     L G E        GG RG    G G  G E +  GR GR
Sbjct:    4 LLEPPDEDTLRVMIATDNHVGFLERDPVRGLDSFAALEEIFLRAKEYHVDFVLLGGDLFHENKPSRKTLHSTMAILRRHCLGSTPVSFQVISDPAPQGEGQEASPPA------FSHVNYEDPNYAVGLPVFSIHGNHDDPTRDGPSEPLSAMDLLGMTNLVNYFGKASATDAVEVAPLLLQKGRTCMALYGLGNMRDERLNRMWQKKKIKFLRHAPRERGAAP-DFFSLFALHQNRDTGRGQKNCVQESMIPEWMDLVVWGHEHECLVRPTRSLAGGFYISQPGSSVATSLVEGEATPKQVGVLDVREGNFRLFPVPLRQVRAFILKEVRLSALAGLDPHHPRAEEQVQAALEREVRALIHEAREDHPPPAP-PWAVLAPPAPGAGLGAPEGGVLGFLHPQQPTLWAAFPGPGREP-----FRHPPLLPGAE--------GGARGRGEPGTGGRGAEWR--GRVGR 446

The following BLAST results are available for this feature:

BLAST of NO03G04160.1 vs.

BLAST of NO03G04160.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM29884.1	3.600e-173	71.03	meiotic recombination 11 [Nannochloropsis gaditana...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO03G04160	NO03G04160	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO03G04160.1	NO03G04160.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO03G04160.1.cds1	NO03G04160.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO03G04160.1.cds2	NO03G04160.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO03G04160.1.cds3	NO03G04160.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO03G04160.1.cds4	NO03G04160.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr3:1204325..1206783+
coding sequence from alignment at chr3:1204325..1206783+

mRNA sequence

>NO03G04160.1 ID=NO03G04160.1|Name=NO03G04160.1|organism=Nannochloropsis oceanica|type=mRNA|length=1937bp
CACGCACGCTCCCCGCACGACAACACAGGCATTACACGCCGGGCGACGTC
AAGGATGGGTGAACCATGGTACGTTCGACTAGATGGTCTTTGTCTAGAGG
ATACGTTGTGAAGCCGTGGCATTCACTCTGCTGCTCAGCCCGCTCCGTTT
TTCTAAGGCCTCTCAGTCATGCTCTCTTGCAGCCCCATGTGTGGTTCCCA
TACCACGGTCCCTACCCGCCAGCAGCTGGAAACTACCGCATGATTTGCGC
GTATCAGCCTGCATGCTCACGCACCATCTTGTGTACTCAGACCATGCCGC
ATGCTTCGCCATCTCATGGCGTTTTTTTCTGCGTACCCCCCCGCTTCTAT
TCTCTTGCCCTTCCTCAATTCGCTTGTAACCCCAATCATTTATATCATTG
TATGGCTAAAGAACAAAGACATCCATTCTTTCTTCCCTCATCCCTTTTGT
CACATCTCAAAGTGCTCAAACTCCCCCCAAAACCCCAACCCCCCTGCTCT
TTTTTCTTCCCCTTCCCGCACAGCGCCCCAAACGAGCTCCTCCTTGAGCC
ACCTGACGAGAACACGCTCCGCATCATGATCGCAACCGACAACCACGTAG
GCTTCCTGGAGCGGGACCCCGTCCGAGGTCCTGACTCGTTCGCGGCGTTG
GAGGAAATCTTCCTCCGCGCCAAGGAATACCACGTGGATTTCGTCCTGCT
CGGTGGGGACTTGTTTCACGACAATAAACCCTCGCGCAAGACCATGCATT
CGACGATAAGCATCCTCCGTCGCCATTGCCTCGGGGATGATCCCGTCTCT
TTTCAAGTTATATCCGAGCCCCCGCCCCAGGGCGGGACGGAAGGCACGAT
GGACGGCATGAACAAAGTAGGGAACTTCGCGCACGTCAATTATGAAGACC
CGAATTACGCGGTGGGACTGCCAATTTTTTCGATTCATGGCAATCATGAT
GACCCCTCCAGGGACGGGAACACGGAGCCTTTGTCGGCGATGGACTTGTT
GAGTGTCACCAATCTGGTCAATTATTTCGGAAAGGCATCCGCTACTGACA
ATGTGGAGGTGAGCCCTCTGTTGTTGCGGAAGGGGGGCACCCTGATGGCG
TTGTACGGGCTGGGGAACATGAGGGATGAACGCTTGAATCGGATGTGGCA
GAAAAAGAAGATCAGGTTCCTTAGGCACCGACCCACGGGCAGGGACGAGG
AGCAGAAGGATTTCTTCTCGCTTTTTGCATTGCACCAGAACAGGGATACG
GGAAGGGGACAGAAAAATTGTGTGCAGGAGAGCATGATTCCCGAGTGGAT
GGATCTGGTGGTGTGGGGACACGAACACGAATGCCTCGTCCGCCCCACCC
GTTCGCTTGCCGGTGGTTTCTTCATCTCCCAGCCCGGGTCCTCTGTTGCC
ACCTCGCTGGTGGAAGGAGAGGCGACTCCGAAGCAAGTCGGCGTCCTAGA
TGTGAGGGAAGGAAATTTTCGTCTCTTCCCCGTTCTCCTCCGACAGGTCC
GTCCCTTCATCCTGAAGGCAATCCGCCTCTCGGCTATCGAGGGCCTGGAT
CCCAATCATCCCAAGGTCGAAGAACACGTCACCCTCGTCCTCGAAAAGCA
GGTGTGGGCGCTGATCGAGGAAGCGAGGGAGGAGCACCCGCCCCCTGGCC
CCCTTCCTGGACAGACCTTCTCTTTGCTTCACCCAGAGCAGGTTCTCGTG
CGGCTTAAGGTTGAATACACCGGATTTTTTACGATCAACAATCAGCGGTT
TGGGCAGCGATTCGTTGGACACGTGGCGAACCCCTCCGACATTTTGTTGT
TTCACAAGGCGCGGAGGCTGGGGGGGAGGGAGGAGGAGGAGGAGGAGGAG
GGAGGGGGGGGGGGAAGAGGAGGAAGGGCGGGAGGGGGGGGGATGAACGG
TGTGGAGGGGAAAGAGGGGGGGAGGGAGGGGAGGTGA

protein sequence of NO03G04160.1

>NO03G04160.1-protein ID=NO03G04160.1-protein|Name=NO03G04160.1|organism=Nannochloropsis oceanica|type=polypeptide|length=624bp
MVRSTRWSLSRGYVVKPWHSLCCSARSVFLRPLSHALLQPHVWFPYHGPY
PPAAGNYRMICAYQPACSRTILCTQTMPHASPSHGVFFCVPPRFYSLALP
QFACNPNHLYHCMAKEQRHPFFLPSSLLSHLKVLKLPPKPQPPCSFFFPF
PHSAPNELLLEPPDENTLRIMIATDNHVGFLERDPVRGPDSFAALEEIFL
RAKEYHVDFVLLGGDLFHDNKPSRKTMHSTISILRRHCLGDDPVSFQVIS
EPPPQGGTEGTMDGMNKVGNFAHVNYEDPNYAVGLPIFSIHGNHDDPSRD
GNTEPLSAMDLLSVTNLVNYFGKASATDNVEVSPLLLRKGGTLMALYGLG
NMRDERLNRMWQKKKIRFLRHRPTGRDEEQKDFFSLFALHQNRDTGRGQK
NCVQESMIPEWMDLVVWGHEHECLVRPTRSLAGGFFISQPGSSVATSLVE
GEATPKQVGVLDVREGNFRLFPVLLRQVRPFILKAIRLSAIEGLDPNHPK
VEEHVTLVLEKQVWALIEEAREEHPPPGPLPGQTFSLLHPEQVLVRLKVE
YTGFFTINNQRFGQRFVGHVANPSDILLFHKARRLGGREEEEEEEGGGGG
RGGRAGGGGMNGVEGKEGGREGR*

mRNA from alignment at chr3:1204325..1206783+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO03G04160.1 ID=NO03G04160.1|Name=NO03G04160.1|organism=Nannochloropsis oceanica|type=mRNA|length=2459bp|location=Sequence derived from alignment at chr3:1204325..1206783+ (Nannochloropsis oceanica)
CACGCACGCTCCCCGCACGACAACACAGGCATTACACGCCGGGCGACGTC
AAGGATGGGTGAACCATGGTACGTTCGACTAGATGGTCTTTGTCTAGAGG
ATACGTTGTGAAGCCGTGGCATTCACTCTGCTGCTCAGCCCGCTCCGTTT
TTCTAAGGCCTCTCAGTCATGCTCTCTTGCAGCCCCATGTGTGGTTCCCA
TACCACGGTCCCTACCCGCCAGCAGCTGGAAACTACCGCATGATTTGCGC
GTATCAGCCTGCATGCTCACGCACCATCTTGTGTACTCAGACCATGCCGC
ATGCTTCGCCATCTCATGGCGTTTTTTTCTGCGTACCCCCCCGCTTCTAT
TCTCTTGCCCTTCCTCAATTCGCTTGTAACCCCAATCATTTATATCATTG
TATGGCTAAAGAACAAAGACATCCATTCTTTCTTCCCTCATCCCTTTTGT
CACATCTCAAAGTGCTCAAACTCCCCCCAAAACCCCAACCCCCCTGCTCT
TTTTTCTTCCCCTTCCCGCACAGCGCCCCAAACGAGCTCCTCCTTGAGCC
ACCTGACGAGAACACGCTCCGCATCATGATCGCAACCGACAACCACGTAG
GCTTCCTGGAGCGGGACCCCGTCCGAGGTCCTGACTCGTTCGCGGCGTTG
GAGGGTAGGTCTGGTCGACTAAATTGGCCTGCGTACTGGAGAGGATAGCT
TTTGGCTATCGATTCTTAATATCACCTTTTCATTACCCCCGTGTATCTCA
ATCACTGTCATAAATATAACCATAAGTATGATTTGTTTGTTCAAGAAGAA
AATGTGGTCCTGGAGGGGATTTCCGGGTCCTCTGCGCAAGACTCACCGCC
CACCACCTATCTACCCACCCACCCTCCCCTCCCTCCCTCCCTCCCACCCT
CCCCTTTTCTGCGCCTAGAAATCTTCCTCCGCGCCAAGGAATACCACGTG
GATTTCGTCCTGCTCGGTGGGGACTTGTTTCACGACAATAAACCCTCGCG
CAAGACCATGCATTCGACGATAAGCATCCTCCGTCGCCATTGCCTCGGGG
ATGATCCCGTCTCTTTTCAAGTTATATCCGAGCCCCCGCCCCAGGGCGGG
ACGGAAGGCACGATGGACGGCATGAACAAAGTAGGGAACTTCGCGCACGT
CAATTATGAAGACCCGAATTACGCGGTGGGACTGCCAATTTTTTCGATTC
ATGGCAATCATGATGACCCCTCCAGGGACGGGAACACGGAGCCTTTGTCG
GCGATGGACTTGTTGAGTGTCACCAATCTGGTCAATTATTTCGGAAAGGC
ATCCGCTACTGACAATGTGGAGGTGAGCCCTCTGTTGTTGCGGAAGGGGG
GCACCCTGATGGCGTTGTACGGGCTGGGGAACATGAGGGATGAACGCTTG
AATCGGATGTGGCAGAAAAAGAAGATCAGGTTCCTTAGGCACCGACCCAC
GGGCAGGGACGAGGAGCAGAAGGATTTCTTCTCGCTTTTTGCATTGCACC
AGAACAGGGATACGGGAAGGGGACAGAAAAATTGTGTGCAGGAGAGCATG
ATTCCCGAGTGGATGGATCTGGTGGTGTGGGGGTACGTCAAGTGAGGGGG
AGGGAGGGAGGGAGGGAGGGAGGGAAAAGGAAAAGTGAATGAGTTTTCAT
TTTCCTGTGGCCAAAACAACCAATTACATATTTCCTCCCTCCCTCCCCAT
CCCTCCCCCTCCCTCCCCCCCCCCCGCATCCAGACACGAACACGAATGCC
TCGTCCGCCCCACCCGTTCGCTTGCCGGTGGTTTCTTCATCTCCCAGCCC
GGGTCCTCTGTTGCCACCTCGCTGGTGGAAGGAGAGGCGACTCCGAAGCA
AGTCGGCGTCCTAGATGTGAGGGAAGGAAATTTTCGTCTCTTCCCCGTTC
TCCTCCGACAGGTATGGCCCTCTTCTCTCTGTGCTCCTCTGTCTTCTTCC
CTTCCTTCCTCTTCTTCAAGGACACAATTTTATTACACACCTCTCCCTCC
CGCCTTCGCATTTCTCAGGTCCGTCCCTTCATCCTGAAGGCAATCCGCCT
CTCGGCTATCGAGGGCCTGGATCCCAATCATCCCAAGGTCGAAGAACACG
TCACCCTCGTCCTCGAAAAGCAGGTGTGGGCGCTGATCGAGGAAGCGAGG
GAGGAGCACCCGCCCCCTGGCCCCCTTCCTGGACAGACCTTCTCTTTGCT
TCACCCAGAGCAGGTTCTCGTGCGGCTTAAGGTTGAATACACCGGATTTT
TTACGATCAACAATCAGCGGTTTGGGCAGCGATTCGTTGGACACGTGGCG
AACCCCTCCGACATTTTGTTGTTTCACAAGGCGCGGAGGCTGGGGGGGAG
GGAGGAGGAGGAGGAGGAGGAGGGAGGGGGGGGGGGAAGAGGAGGAAGGG
CGGGAGGGGGGGGGATGAACGGTGTGGAGGGGAAAGAGGGGGGGAGGGAG
GGGAGGTGA

Coding sequence (CDS) from alignment at chr3:1204325..1206783+

>NO03G04160.1 ID=NO03G04160.1|Name=NO03G04160.1|organism=Nannochloropsis oceanica|type=CDS|length=1872bp|location=Sequence derived from alignment at chr3:1204325..1206783+ (Nannochloropsis oceanica)
ATGGTACGTTCGACTAGATGGTCTTTGTCTAGAGGATACGTTGTGAAGCC
GTGGCATTCACTCTGCTGCTCAGCCCGCTCCGTTTTTCTAAGGCCTCTCA
GTCATGCTCTCTTGCAGCCCCATGTGTGGTTCCCATACCACGGTCCCTAC
CCGCCAGCAGCTGGAAACTACCGCATGATTTGCGCGTATCAGCCTGCATG
CTCACGCACCATCTTGTGTACTCAGACCATGCCGCATGCTTCGCCATCTC
ATGGCGTTTTTTTCTGCGTACCCCCCCGCTTCTATTCTCTTGCCCTTCCT
CAATTCGCTTGTAACCCCAATCATTTATATCATTGTATGGCTAAAGAACA
AAGACATCCATTCTTTCTTCCCTCATCCCTTTTGTCACATCTCAAAGTGC
TCAAACTCCCCCCAAAACCCCAACCCCCCTGCTCTTTTTTCTTCCCCTTC
CCGCACAGCGCCCCAAACGAGCTCCTCCTTGAGCCACCTGACGAGAACAC
GCTCCGCATCATGATCGCAACCGACAACCACGTAGGCTTCCTGGAGCGGG
ACCCCGTCCGAGGTCCTGACTCGTTCGCGGCGTTGGAGGAAATCTTCCTC
CGCGCCAAGGAATACCACGTGGATTTCGTCCTGCTCGGTGGGGACTTGTT
TCACGACAATAAACCCTCGCGCAAGACCATGCATTCGACGATAAGCATCC
TCCGTCGCCATTGCCTCGGGGATGATCCCGTCTCTTTTCAAGTTATATCC
GAGCCCCCGCCCCAGGGCGGGACGGAAGGCACGATGGACGGCATGAACAA
AGTAGGGAACTTCGCGCACGTCAATTATGAAGACCCGAATTACGCGGTGG
GACTGCCAATTTTTTCGATTCATGGCAATCATGATGACCCCTCCAGGGAC
GGGAACACGGAGCCTTTGTCGGCGATGGACTTGTTGAGTGTCACCAATCT
GGTCAATTATTTCGGAAAGGCATCCGCTACTGACAATGTGGAGGTGAGCC
CTCTGTTGTTGCGGAAGGGGGGCACCCTGATGGCGTTGTACGGGCTGGGG
AACATGAGGGATGAACGCTTGAATCGGATGTGGCAGAAAAAGAAGATCAG
GTTCCTTAGGCACCGACCCACGGGCAGGGACGAGGAGCAGAAGGATTTCT
TCTCGCTTTTTGCATTGCACCAGAACAGGGATACGGGAAGGGGACAGAAA
AATTGTGTGCAGGAGAGCATGATTCCCGAGTGGATGGATCTGGTGGTGTG
GGGACACGAACACGAATGCCTCGTCCGCCCCACCCGTTCGCTTGCCGGTG
GTTTCTTCATCTCCCAGCCCGGGTCCTCTGTTGCCACCTCGCTGGTGGAA
GGAGAGGCGACTCCGAAGCAAGTCGGCGTCCTAGATGTGAGGGAAGGAAA
TTTTCGTCTCTTCCCCGTTCTCCTCCGACAGGTCCGTCCCTTCATCCTGA
AGGCAATCCGCCTCTCGGCTATCGAGGGCCTGGATCCCAATCATCCCAAG
GTCGAAGAACACGTCACCCTCGTCCTCGAAAAGCAGGTGTGGGCGCTGAT
CGAGGAAGCGAGGGAGGAGCACCCGCCCCCTGGCCCCCTTCCTGGACAGA
CCTTCTCTTTGCTTCACCCAGAGCAGGTTCTCGTGCGGCTTAAGGTTGAA
TACACCGGATTTTTTACGATCAACAATCAGCGGTTTGGGCAGCGATTCGT
TGGACACGTGGCGAACCCCTCCGACATTTTGTTGTTTCACAAGGCGCGGA
GGCTGGGGGGGAGGGAGGAGGAGGAGGAGGAGGAGGGAGGGGGGGGGGGA
AGAGGAGGAAGGGCGGGAGGGGGGGGGATGAACGGTGTGGAGGGGAAAGA
GGGGGGGAGGGAGGGGAGGTGA

Synonyms

Publications