NO03G04160, NO03G04160 (gene) Nannochloropsis oceanica

Overview
NameNO03G04160
Unique NameNO03G04160
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2459
Alignment locationchr3:1204325..1206783 +

Link to JBrowse

Properties
Property NameValue
DescriptionDNA repair and meiosis protein (Mre11)
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1204325..1206783 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0030870Mre11 complex
GO:0005634nucleus
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:00084083'-5' exonuclease activity
GO:0016787hydrolase activity
GO:0004519endonuclease activity
GO:0030145manganese ion binding
GO:0005488binding
GO:0004518nuclease activity
Vocabulary: Biological Process
TermDefinition
GO:0006302double-strand break repair
GO:0006950response to stress
GO:0006259DNA metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR003701DNA_repair_Mre11
IPR004843Calcineurin-like_PHP_apaH
IPR007281Mre11_DNA-bd
Homology
BLAST of NO03G04160 vs. NCBI_GenBank
Match: EWM29884.1 (meiotic recombination 11 [Nannochloropsis gaditana])

HSP 1 Score: 628.2 bits (1619), Expect = 2.600e-176
Identity = 307/372 (82.53%), Postives = 331/372 (88.98%), Query Frame = 0
Query:  159 LLEPPDENTLRIMIATDNHVGFLERDPVRGPDSFAALEEIFLRAKEYHVDFVLLGGDLFHDNKPSRKTMHSTISILRRHCLGDDPVSFQVISEPPPQG-GTEGTMDGMNKVGNFAHVNYEDPNYAVGLPIFSIHGNHDDPSRDGNTEPLSAMDLLSVTNLVNYFGKASATDNVEVSPLLLRKGGTLMALYGLGNMRDERLNRMWQKKKIRFLRHRPTGRDEEQKDFFSLFALHQNRDTGRGQKNCVQESMIPEWMDLVVWGHEHECLVRPTRSLAGGFFISQPGSSVATSLVEGEATPKQVGVLDVREGNFRLFPVLLRQVRPFILKAIRLSAIEGLDPNHPKVEEHVTLVLEKQVWALIEEAREEHPPPGP 530
            LLEPPDE+TLR+MIATDNHVGFLERDPVRG DSFAALEEIFLRAKEYHVDFVLLGGDLFH+NKPSRKT+HST++ILRRHCLG  PVSFQVIS+P PQG G E +         F+HVNYEDPNYAVGLP+FSIHGNHDDP+RDG +EPLSAMDLL +TNLVNYFGKASATD VEV+PLLL+KG T MALYGLGNMRDERLNRMWQKKKI+FLRH P  R     DFFSLFALHQNRDTGRGQKNCVQESMIPEWMDLVVWGHEHECLVRPTRSLAGGF+ISQPGSSVATSLVEGEATPKQVGVLDVREGNFRLFPV LRQVR FILK +RLSA+ GLDP+HP+ EE V   LE++V ALI EARE+HPPP P
Sbjct:    4 LLEPPDEDTLRVMIATDNHVGFLERDPVRGLDSFAALEEIFLRAKEYHVDFVLLGGDLFHENKPSRKTLHSTMAILRRHCLGSTPVSFQVISDPAPQGEGQEASPPA------FSHVNYEDPNYAVGLPVFSIHGNHDDPTRDGPSEPLSAMDLLGMTNLVNYFGKASATDAVEVAPLLLQKGRTCMALYGLGNMRDERLNRMWQKKKIKFLRHAPRERG-AAPDFFSLFALHQNRDTGRGQKNCVQESMIPEWMDLVVWGHEHECLVRPTRSLAGGFYISQPGSSVATSLVEGEATPKQVGVLDVREGNFRLFPVPLRQVRAFILKEVRLSALAGLDPHHPRAEEQVQAALEREVRALIHEAREDHPPPAP 368          
BLAST of NO03G04160 vs. NCBI_GenBank
Match: XP_002181412.1 (Mre11 DNA repair/recombination protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC47335.1 Mre11 DNA repair/recombination protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 493.8 bits (1270), Expect = 7.800e-136
Identity = 246/452 (54.42%), Postives = 321/452 (71.02%), Query Frame = 0
Query:  154 APNELLLEPPDENTLRIMIATDNHVGFLERDPVRGPDSFAALEEIFLRAKEYHVDFVLLGGDLFHDNKPSRKTMHSTISILRRHCLGDDPVSFQVISEPPPQGGTEGTMDGMNKVGNFAHVNYEDPNYAVGLPIFSIHGNHDDPSRDGNTEPLSAMDLLSVTNLVNYFGKASATDNVEVSPLLLRKGGTLMALYGLGNMRDERLNRMWQKKKIRFLRHRPTGRD-EEQKDFFSLFALHQNRDTGRGQKNCVQESMIPEWMDLVVWGHEHECLVRPTRSLAGGFFISQPGSSVATSLVEGEATPKQVGVLDVREGNFRLFPVLLRQVRPFILKAIRLSAIE-GLDPNHPKVEEHVTLVLEKQVWALIEEARE-------------------EHPPPGPLPGQTFSLLHPEQVLVRLKVEYT-GFFTINNQRFGQRFVGHVANPSDILLFHKAR 584
            AP++ +LE PDE+TLR+M++TDNH+G+ E+DPVRG DSFAA EE+   AK++  D VL+ GDLFHDN+PSR+T++ T+ I+RR+C+G DPV  Q++S+              N       VNY+D NY+V LPIFSIHGNHDDP+RD + E L+A+DLL+V+NLVNYFG+    D VE+SP+L++KG T +ALYG+G+MRDERLNRMWQ KK+RFLR      D E    FF+LF LHQNRD GRG KNCVQESMIPEWMDLVVWGHEHECL+  + S+ G F I+QPGSSVATSLV GEA  K+VGV+DV+  NFR+  V L QVR F+   + L      LDP+ PK+++ VT +LE+QV  L+  ARE                   +  P G +    ++L +P++VLVR+KV+++ GF ++NNQRFG RFVG VANPSDILLFH+ +
Sbjct:   19 APSD-VLEDPDEHTLRMMLSTDNHLGYAEKDPVRGMDSFAAFEEVLYLAKQFRCDMVLIAGDLFHDNRPSRRTLYITMEIIRRYCMGPDPVRIQIVSD-----------QAQNFRNVSGTVNYQDDNYSVDLPIFSIHGNHDDPTRDSHGELLAALDLLAVSNLVNYFGRQEQVDQVEISPVLIQKGATQLALYGMGSMRDERLNRMWQGKKVRFLRPAEDDEDNEHDTGFFNLFTLHQNRDLGRGSKNCVQESMIPEWMDLVVWGHEHECLIEFSESVVGTFRITQPGSSVATSLVAGEAVRKKVGVVDVQGKNFRMHTVPLTQVRSFVTAELSLQEHRANLDPDDPKIDDKVTNILEEQVRVLVLNAREKRREILRDARAAGSNAGGRDDDPKGMISPLRYTLKNPDEVLVRIKVDHSNGFLSLNNQRFGARFVGDVANPSDILLFHRRK 458          
BLAST of NO03G04160 vs. NCBI_GenBank
Match: XP_002181413.1 (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >EEC47336.1 predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 491.1 bits (1263), Expect = 5.000e-135
Identity = 242/433 (55.89%), Postives = 315/433 (72.75%), Query Frame = 0
Query:  154 APNELLLEPPDENTLRIMIATDNHVGFLERDPVRGPDSFAALEEIFLRAKEYHVDFVLLGGDLFHDNKPSRKTMHSTISILRRHCLGDDPVSFQVISEPPPQGGTEGTMDGMNKVGNFAHVNYEDPNYAVGLPIFSIHGNHDDPSRDGNTEPLSAMDLLSVTNLVNYFGKASATDNVEVSPLLLRKGGTLMALYGLGNMRDERLNRMWQKKKIRFLRHRPTGRD-EEQKDFFSLFALHQNRDTGRGQKNCVQESMIPEWMDLVVWGHEHECLVRPTRSLAGGFFISQPGSSVATSLVEGEATPKQVGVLDVREGNFRLFPVLLRQVRPFILKAIRLSAIE-GLDPNHPKVEEHVTLVLEKQVWALIEEAREEHPPPGPLPGQTFSLLHPEQVLVRLKVEYT-GFFTINNQRFGQRFVGHVANPSDILLFHKAR 584
            AP++ +LE PDE+TLR+M++TDNH+G+ E+DPVRG DSFAA EE+   AK++  D VL+ GDLFHDN+PSR+T++ T+ I+RR+C+G DPV  Q++S+              N       VNY+D NY+V LPIFSIHGNHDDP+RD + E L+A+DLL+V+NLVNYFG+    D VE+SP+L++KG T +ALYG+G+MRDERLNRMWQ KK+RFLR      D E    FF+LF LHQNRD GRG KNCVQESMIPEWMDLVVWGHEHECL+  + S+ G F I+QPGSSVATSLV GEA  K+VGV+DV+  NFR+  V L QVR F+   + L      LDP+ PK+++ VT +LE+QV  +I   R             ++L +P++VLVR+KV+++ GF ++NNQRFG RFVG VANPSDILLFH+ +
Sbjct:   19 APSD-VLEDPDEHTLRMMLSTDNHLGYAEKDPVRGMDSFAAFEEVLYLAKQFRCDMVLIAGDLFHDNRPSRRTLYITMEIIRRYCMGPDPVRIQIVSD-----------QAQNFRNVSGTVNYQDDNYSVDLPIFSIHGNHDDPTRDSHGELLAALDLLAVSNLVNYFGRQEQVDQVEISPVLIQKGATQLALYGMGSMRDERLNRMWQGKKVRFLRPAEDDEDNEHDTGFFNLFTLHQNRDLGRGSKNCVQESMIPEWMDLVVWGHEHECLIEFSESVVGTFRITQPGSSVATSLVAGEAVRKKVGVVDVQGKNFRMHTVPLTQVRSFVTAELSLQEHRANLDPDDPKIDDKVTNILEEQVRGMISPLR-------------YTLKNPDEVLVRIKVDHSNGFLSLNNQRFGARFVGDVANPSDILLFHRRK 426          
BLAST of NO03G04160 vs. NCBI_GenBank
Match: CBJ30090.1 (meiotic recombination 11 [Ectocarpus siliculosus])

HSP 1 Score: 485.0 bits (1247), Expect = 3.600e-133
Identity = 248/438 (56.62%), Postives = 307/438 (70.09%), Query Frame = 0
Query:  171 MIATDNHVG--FLERDPVRGPDSFAALEEIFLRAKEYHVDFVLLGGDLFHDNKPSRKTMHSTISILRRHCLGDDPVSFQVISEPPPQGGTEGTMDGMNKVGNFAHVNYEDPNYAVGLPIFSIHGNHDDPSRDGNTEPLSAMDLLSVTNLVNYFGKASATDNVEVSPLLLRKGGTLMALYGLGNMRDERLNRMWQKKKIRFLRHRPTGRDEEQKDFFSLFALHQNRDTGRGQKNCVQESMIPEWMDLVVWGHEHECL----------------------------VRPTRSLAGGFFISQPGSSVATSLVEGEATPKQVGVLDVREGNFRLFPVLLRQVRPFILKAIRLSAIEGLDPNHPKVEEHVTLVLEKQVWALIEEAREEHPPPG--PLPGQTFSLLHPEQVLVRLKVEYTGFFTINNQRFGQRFVGHVANPSDI 577
            M+ATD+H+G  ++ERDPVRG DSFAA EE+ L AKE  VDFVLLGGDLFH+NKPSR+T++ T+ ILRRHC+GD+PVSFQ+ISE              N    F HVNYEDP ++VGLPIFSIHGNHDDP+R+G  E L+A+DLL V NLVNYFGK++  D+VEV+P+L++KG T +ALYG+G+MRDERLNRMWQ+KK+RFLR      D+  KDFF++F LHQNRD GRG+KNC+ ESMIPEW+DLV+WGHEHEC                             V P  SL G F ISQPGSSVATSL EGEA PK VG+L++R  +FRL  V L QVRPF +  I LS ++GLD     V+E V   L  QV  ++EE R+E       P  GQ + +   +QVLVRLKVE++ F T+NNQRFG +F+G VANPSD+
Sbjct:    1 MVATDSHLGRVYMERDPVRGKDSFAAFEEMLLLAKERKVDFVLLGGDLFHENKPSRRTLYQTMDILRRHCMGDEPVSFQIISE-----------QAHNFKDRFGHVNYEDPYFSVGLPIFSIHGNHDDPTREGGVEALAALDLLHVANLVNYFGKSNKVDDVEVNPILIQKGLTKVALYGMGSMRDERLNRMWQQKKVRFLRPL---EDDGGKDFFNVFVLHQNRDLGRGKKNCIHESMIPEWIDLVIWGHEHECQVLAFADPWLCVPGGGAEKGASCFQTQLEVEPMESLVGTFRISQPGSSVATSLCEGEAVPKNVGLLEIRGNDFRLQAVPLSQVRPFRMGEIVLSEVDGLDSKGANVDEAVGEALANQVEQMVEELRKEDEELALTPPEGQEYKIEKRDQVLVRLKVEHSDFPTLNNQRFGSQFMGKVANPSDL 424          
BLAST of NO03G04160 vs. NCBI_GenBank
Match: XP_002290809.1 (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >EED92561.1 predicted protein, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 473.0 bits (1216), Expect = 1.400e-129
Identity = 236/418 (56.46%), Postives = 299/418 (71.53%), Query Frame = 0
Query:  164 DENTLRIMIATDNHVGFLERDPVRGPDSFAALEEIFLRAKEYHVDFVLLGGDLFHDNKPSRKTMHSTISILRRHCLGDDPVSFQVISEPPPQGGTEGTMDGMNKVGNFAHVNYEDPNYAVGLPIFSIHGNHDDPSRDGNTEPLSAMDLLSVTNLVNYFGKASATDNVEVSPLLLRKGGTLMALYGLGNMRDERLNRMWQKKKIRFLRHRPTGRDEEQKDFFSLFALHQNRDTGRGQKNCVQESMIPEWMDLVVWGHEHECLVRPTRSLAGGFFISQPGSSVATSLVEGEATPKQVGVLDVREGNFRLFPVLLRQVRPFILKAIRLSAI-EG---LDPNHPKVEEHVTLVLEKQVWALIEEAREEHPPPGPLPGQTFSLLHPEQVLVRLKVEYTGFFTINNQRFGQRFVGHVANPSDIL 578
            D+NTLR++++TDNH+G+LERDP+RG DSFAA EE+   A+    D VLL GD+FHDNKPSR+T+H T+ ILRR+C+G + V FQ++S+           + +  V      NYED  Y+V +PIF+IHGNHDDP+RDG TE LSA+DLLSV+NL+NYFG+    DNV+VSP+LL+KGGT +ALYG+G+MRDERLNRMWQ KK++FLR      +E+   +F++F LHQNRD GRG KNCV ESMIPEWMDLVVWGHEHECL+ P  SL G F ISQPGSSVATSL +GE   K VG+LD+R   FRL  + L  VR F +  + L+ + EG   LD   PK+EE +  VL  +V  L+            +  + ++L  PEQVLVRLKVE++GF T+NNQRFG RFVG VANPSDIL
Sbjct:    1 DDNTLRVLLSTDNHLGYLERDPIRGLDSFAAFEEVLSLARSQKADLVLLSGDVFHDNKPSRRTLHKTMEILRRYCMGGESVGFQIVSD---------QKECLRSVVT-GRANYEDEYYSVDMPIFAIHGNHDDPTRDGGTELLSALDLLSVSNLINYFGRQDQVDNVQVSPVLLQKGGTKVALYGMGSMRDERLNRMWQGKKVKFLR-----PEEDDNRWFNIFTLHQNRDLGRGSKNCVHESMIPEWMDLVVWGHEHECLITPQESLVGTFRISQPGSSVATSLTQGEGRQKHVGILDIRGQQFRLKSIPLGSVRGFAIGDVSLTELAEGGTVLDIEDPKLEERMGDVLAAEVENLVSYFE-------CMSVENYTLQSPEQVLVRLKVEHSGFTTLNNQRFGSRFVGEVANPSDIL 396          
BLAST of NO03G04160 vs. NCBI_GenBank
Match: GAX26570.1 (double-strand break repair protein MRE11 [Fistulifera solaris])

HSP 1 Score: 447.2 bits (1149), Expect = 8.300e-122
Identity = 238/463 (51.40%), Postives = 310/463 (66.95%), Query Frame = 0
Query:  159 LLEPPDENTLRIMIATDNHVGFLERDPVRGPDSFAALEEIFLRAKEYHVDFVLLGGDLFHDNKPSRKTMHSTISILRRHCLGDDPVSFQVISEPPPQGGTEGTMDGMNKVGNFAH---VNYEDPNYAVGLPIFSIHGNHDDPSRDG-NTEPLSAMDLLSVTNLVNYFGKASATDNVEVSPLLLRKGGTLMALYGLGNMRDERLNRMWQKKKIRFLRHRPTGRDEEQ------------------KDFFSLFALHQNRDTGRGQKNCVQESMIPEWMDLVVWGHEHECLVRPTRSLAGGFFISQPGSSVATSLVEGEATPKQVGVLDVREGNFRLFPVLLRQVRPFILKAIRLSA-IEGLDPNHPKVEEHVTLVLEKQVWA-----------LIEEAREEHPPPG----PLPGQTFSLLHPEQVLVRLKVEYTGFFTINNQRFGQRFVGHVANPSDILLFHKAR 584
            +LE P+E+TLRIM++TDNH+G+ ERD VRG DSFAA EE+   AK+Y  D VLL GDLFH+N+PSR T+  T+ I+R++C+GD+PV  Q++S+P                 NFA    VNY+DPNY+V LPIFSIHGNHDDP RDG  T  L+++DLL+  NL+NY GK    + +E++P++L+KG T + LY LG+MRDERL+RM++ +K+RFL  RP    ++Q                  + FF++F LHQNRD GRG KNCVQE+MIPEW+DLVVWGHEHEC+V    S+ G F I+QPGSSVATSL+ GEA  K+VGVLD++   +RL PV L QVRPF+   I L    E LDP  P+V+EHV  VL+++V             L++EAR      G    PL  Q   L  P + LVRL+VE+TGF T++NQRFG  FVG VANP DILLFH+ +
Sbjct:   11 VLEIPNEDTLRIMVSTDNHLGYNERDAVRGMDSFAAFEEVLYLAKKYQCDMVLLAGDLFHENRPSRATLFRTMKIVRKYCMGDNPVRIQILSDP---------------TKNFASNHVVNYQDPNYSVDLPIFSIHGNHDDPIRDGKGTTFLASLDLLAACNLINYIGKQDKIEQIEIAPVILKKGETQLCLYSLGSMRDERLHRMFKNQKVRFL--RPQQDIDQQXXXXXXXXXXXXXXXXXXQGFFNIFMLHQNRDLGRG-KNCVQETMIPEWIDLVVWGHEHECIVDLFESVVGTFRITQPGSSVATSLIAGEAARKKVGVLDIKGKQYRLIPVPLTQVRPFVTAEISLQEHREQLDPEDPRVDEHVATVLQEEVKVMVCSAQDKRRDLLQEARRLGNDAGDNDSPLMHQ---LEKPGEPLVRLRVEHTGFSTLSNQRFGAHFVGQVANPEDILLFHRRK 452          
BLAST of NO03G04160 vs. NCBI_GenBank
Match: GAX23279.1 (double-strand break repair protein MRE11 [Fistulifera solaris])

HSP 1 Score: 445.7 bits (1145), Expect = 2.400e-121
Identity = 235/464 (50.65%), Postives = 310/464 (66.81%), Query Frame = 0
Query:  159 LLEPPDENTLRIMIATDNHVGFLERDPVRGPDSFAALEEIFLRAKEYHVDFVLLGGDLFHDNKPSRKTMHSTISILRRHCLGDDPVSFQVISEPPPQGGTEGTMDGMNKVGNFAH---VNYEDPNYAVGLPIFSIHGNHDDPSRDG-NTEPLSAMDLLSVTNLVNYFGKASATDNVEVSPLLLRKGGTLMALYGLGNMRDERLNRMWQKKKIRFLRHRPTGRDEEQ-------------------KDFFSLFALHQNRDTGRGQKNCVQESMIPEWMDLVVWGHEHECLVRPTRSLAGGFFISQPGSSVATSLVEGEATPKQVGVLDVREGNFRLFPVLLRQVRPFILKAIRLSA-IEGLDPNHPKVEEHVTLVLEKQVWALIEEAREEH---------------PPPGPLPGQTFSLLHPEQVLVRLKVEYTGFFTINNQRFGQRFVGHVANPSDILLFHKAR 584
            +LE P+E+TLRIMI+TDNH+G+ ERD VRG DSFAA EE+   AK+Y  D VLL GDLFH+N+PSR T+  T+ I+R++C+GD+PV  Q++S+P                 NFA    VNY+DPNY+V LPIFSIHGNHDDP RDG  T  L+++DLL+  NL+NY GK    + +E++P++L+KG T + LY LG+MRDERL+RM++ +K+RFLR +   +D +Q                   + FF++F LHQNRD GRG KNCVQE+MIPEW+DLVVWGHEHEC+V    S+ G F I+QPGSSVATSLV GEA  K+VGVLD++   +RL PV L QVRPF+   I L    E LDP  P+V+EHV  VL+++V  ++  A+++                    PL    + L  P + LVRL+VE+TGF T++NQRFG  FVG VANP DILLFH+ +
Sbjct:   11 VLEFPNEDTLRIMISTDNHLGYNERDAVRGMDSFAAFEEVLYLAKKYQCDMVLLAGDLFHENRPSRATLFRTMQIVRKYCMGDNPVRIQILSDP---------------TKNFASNHVVNYQDPNYSVDLPIFSIHGNHDDPIRDGKGTTFLASLDLLAACNLINYIGKQDKIEQIEIAPVILKKGETQLCLYSLGSMRDERLHRMFKNQKVRFLRPQ---QDIDQXXXXXXXXXXXXXXXXXXXQGFFNIFMLHQNRDLGRG-KNCVQETMIPEWIDLVVWGHEHECIVDLFESVVGTFRITQPGSSVATSLVAGEAARKKVGVLDIKGKQYRLTPVPLTQVRPFVTAEISLQEHREQLDPEDPRVDEHVATVLQEEVKVMVCSAQDKRRDLLREARRLGNDAGDDDSPL---MYQLEKPGEPLVRLRVEHTGFSTLSNQRFGAHFVGQVANPEDILLFHRRK 452          
BLAST of NO03G04160 vs. NCBI_GenBank
Match: XP_024574254.1 (dna repair protein partial [Plasmopara halstedii] >CEG37885.1 dna repair protein partial [Plasmopara halstedii])

HSP 1 Score: 438.0 bits (1125), Expect = 5.100e-119
Identity = 228/444 (51.35%), Postives = 297/444 (66.89%), Query Frame = 0
Query:  162 PPDENTLRIMIATDNHVGFLERDPVRGPDSFAALEEIFLRAKEYHVDFVLLGGDLFHDNKPSRKTMHSTISILRRHCLGDDPVSFQVISEPPPQGGTEGTMDGMNKVGNFAHVNYEDPNYAVGLPIFSIHGNHDDPSRDGN---TEPLSAMDLLSVTNLVNYFGKASATDNVEVSPLLLRKGGTLMALYGLGNMRDERLNRMWQKKKIRFLRHRPTGRDEEQKDFFSLFALHQNR-DTGRGQKNCVQESMIPEWMDLVVWGHEHECLVRPTRSLAGGFFISQPGSSVATSLVEGEATPKQVGVLDVREGNFRLFPVLLRQVRPFILKAIRLSAIEGLDPNHPKVEEHVTLVLEKQVWALIEEAREE----------------HPPPGPLPGQTFSLLHPE-QVLVRLKVEYTGFFTINNQRFGQRFVGHVANPSDILLFHKARR 585
            P + +TLR++I+TDNH+G+ E+DPVRG DSF +  EI   A+   VD +LLGGDLFH+NKPSR T++ T+ +LR +C+GD  V+FQV+S            D      NF  VN+EDPNY V LPIFSIHGNHDDPSR+G    T+ L+A+DLLS  NL+NYFGK+   D VEV P+LL KG T +A+YGLGNMRDERLNRM+ + K+ F   RP    E  +++FS+F +HQNR D GRG KNCV ES+IP ++DLVVWGHEHEC +    S+ G FFI+QPGSSVATSLVEGEA PK V V+++    FR+    L  VRPF +  + LS +E L+PN P V E +   LE +V  L++EA  E                   P PLP  +   ++ +  VL+RL+VE+TGF  + NQRFG +FVG VANP+DILLFH+ ++
Sbjct:   10 PREVDTLRVLISTDNHLGYAEKDPVRGDDSFRSFREILQLAQRERVDLLLLGGDLFHENKPSRHTLYETMRLLRAYCMGDGAVNFQVVS------------DQSVNFPNFGVVNFEDPNYNVELPIFSIHGNHDDPSREGGGTATQSLAALDLLSAANLINYFGKSEKVDAVEVFPVLLTKGNTRVAVYGLGNMRDERLNRMFAQGKVVF--RRPA---EHAEEWFSIFVVHQNRDDKGRGSKNCVPESVIPNFIDLVVWGHEHECQIDVQESVKGDFFITQPGSSVATSLVEGEAKPKNVAVVEINGTTFRMTNFELHTVRPFKIGEVILSEVEDLEPNDPDVTERIGEYLEGRVIELLQEAEVEQQERQRKYAMDYEQKXQESPYPLPEASIGQINEKVLVLIRLRVEHTGFPVLVNQRFGAKFVGKVANPNDILLFHRRKK 436          
BLAST of NO03G04160 vs. NCBI_GenBank
Match: OQS04777.1 (double-strand break repair protein [Thraustotheca clavata])

HSP 1 Score: 434.1 bits (1115), Expect = 7.300e-118
Identity = 215/419 (51.31%), Postives = 287/419 (68.50%), Query Frame = 0
Query:  166 NTLRIMIATDNHVGFLERDPVRGPDSFAALEEIFLRAKEYHVDFVLLGGDLFHDNKPSRKTMHSTISILRRHCLGDDPVSFQVISEPPPQGGTEGTMDGMNKVGNFAHVNYEDPNYAVGLPIFSIHGNHDDPSRDGNTEPLSAMDLLSVTNLVNYFGKASATDNVEVSPLLLRKGGTLMALYGLGNMRDERLNRMWQKKKIRFLRHRPTGRDEEQKDFFSLFALHQNRDT-GRGQKNCVQESMIPEWMDLVVWGHEHECLVRPTRSLAGGFFISQPGSSVATSLVEGEATPKQVGVLDVREGNFRLFPVLLRQVRPFILKAIRLSAIEGLDPNHPKVEEHVTLVLEKQVWALIEEAREEHPPPGPLPGQTFSLLHPEQVLVRLKVEYTGFFTINNQRFGQRFVGHVANPSDILLFHKAR 584
            +T++I+++TDNH+G+ E D VRG DSF A EE+        VDFVLL GDLFH NKPSR T++ T+++LR +CLGD  ++FQ++S            D      NF H NYEDPN  V LPIFSIHGNHDDP+ +     L+A+DLLS  NLVNYFGK+   D +EV P+LL KG T +A+YGLGNMRDERL+RM+ + K+RF R   T      +++FS+F +HQNRD  GRG KNC+ ES IP+++D V+WGHEHECL+    SL   FFI+QPGSS+ATSL+EGE+ PK+VG+L+V  GNFRL  + L  VRPF +  + L  ++GLDPN PKV + +  VL  +V  LI++A+ E         +    +   ++L+RL+VE++GF  INNQRFG +FVG VANPSDILLF + +
Sbjct:    6 STIKILVSTDNHLGYCENDGVRGKDSFRAFEEMLSIGVREKVDFVLLAGDLFHHNKPSRATLYRTMALLRNYCLGDGSINFQILS------------DQSLNFPNFGHANYEDPNINVRLPIFSIHGNHDDPTGEAG-RSLAALDLLSAANLVNYFGKSDRVDEIEVFPILLEKGSTKLAVYGLGNMRDERLHRMFAQGKVRFRRPEDT-----PEEWFSIFVVHQNRDNRGRGAKNCLPESFIPDFIDFVIWGHEHECLIELEESLKANFFITQPGSSIATSLIEGESKPKKVGILEVLGGNFRLRSIPLNTVRPFKMGEVVLKDVDGLDPNDPKVADKIHSVLTVRVQELIDQAKAEMNEANTRSSEE---IESTEILIRLRVEHSGFPVINNQRFGGQFVGRVANPSDILLFTRRK 403          
BLAST of NO03G04160 vs. NCBI_GenBank
Match: XP_008619097.1 (hypothetical protein SDRG_14723 [Saprolegnia diclina VS20] >EQC27523.1 hypothetical protein SDRG_14723 [Saprolegnia diclina VS20])

HSP 1 Score: 433.3 bits (1113), Expect = 1.200e-117
Identity = 222/419 (52.98%), Postives = 283/419 (67.54%), Query Frame = 0
Query:  164 DENTLRIMIATDNHVGFLERDPVRGPDSFAALEEIFLRAKEYHVDFVLLGGDLFHDNKPSRKTMHSTISILRRHCLGDDPVSFQVISEPPPQGGTEGTMDGMNKVGNFAHVNYEDPNYAVGLPIFSIHGNHDDPSRDGNTEPLSAMDLLSVTNLVNYFGKASATDNVEVSPLLLRKGGTLMALYGLGNMRDERLNRMWQKKKIRFLRHRPTGRDEEQKDFFSLFALHQNRDT-GRGQKNCVQESMIPEWMDLVVWGHEHECLVRPTRSLAGGFFISQPGSSVATSLVEGEATPKQVGVLDVREGNFRLFPVLLRQVRPFILKAIRLSAIEGLDPNHPKVEEHVTLVLEKQVWALIEEAREEHPPPGPLPGQTFSLLH--PEQVLVRLKVEYTGFFTINNQRFGQRFVGHVANPSDILLF 580
            D  T++I+++TDNH+G+ E D VRG DSF A EE+     +  VDFVLL GDLFH NKPSR TM+ T+S+LR +CLGD  ++FQ++S            D      NF   NYEDPN  V LPIFSIHGNHDDP+ +     L+A+DLLS  NLVNYFGK+   D +EV P+LL KG T +A+YGLGNMRDERL+RM+ K ++RF R      +E    +FS+F +HQNRD  GRG KNC+ ES IPE++D V+WGHEHECL+    S  G FFI+QPGSSVATSL+EGEA PKQVG+L++R  +FRL    L+ VRPF +  +    I+GLDPN PKV E +  +L  +V  L++EA  E            + +H  P ++LVRL+VE+TGF  INNQRFG +FVG VANP DILLF
Sbjct:    5 DGATVKILVSTDNHLGYCEHDGVRGKDSFRAFEEMLAIGVKAKVDFVLLAGDLFHHNKPSRATMYRTMSLLRHYCLGDGNINFQILS------------DQSLNFPNFGVANYEDPNVNVRLPIFSIHGNHDDPTGEAG-RSLAALDLLSAANLVNYFGKSDRVDEIEVFPILLEKGATKIAIYGLGNMRDERLHRMFAKGQVRFRR-----PEESPDAWFSIFVVHQNRDNRGRGAKNCLPESFIPEFIDFVIWGHEHECLIELEESAKGNFFITQPGSSVATSLIEGEAKPKQVGILEIRGSDFRLRAEPLKTVRPFKIGDVAFRDIDGLDPNDPKVAEKMHSILTSRVQELLDEANAE-----------LAAVHADPMEILVRLRVEHTGFPVINNQRFGGQFVGRVANPGDILLF 394          
The following BLAST results are available for this feature:
BLAST of NO03G04160 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM29884.12.600e-17682.53meiotic recombination 11 [Nannochloropsis gaditana... [more]
XP_002181412.17.800e-13654.42Mre11 DNA repair/recombination protein [Phaeodacty... [more]
XP_002181413.15.000e-13555.89predicted protein, partial [Phaeodactylum tricornu... [more]
CBJ30090.13.600e-13356.62meiotic recombination 11 [Ectocarpus siliculosus][more]
XP_002290809.11.400e-12956.46predicted protein, partial [Thalassiosira pseudona... [more]
GAX26570.18.300e-12251.40double-strand break repair protein MRE11 [Fistulif... [more]
GAX23279.12.400e-12150.65double-strand break repair protein MRE11 [Fistulif... [more]
XP_024574254.15.100e-11951.35dna repair protein partial [Plasmopara halstedii] ... [more]
OQS04777.17.300e-11851.31double-strand break repair protein [Thraustotheca ... [more]
XP_008619097.11.200e-11752.98hypothetical protein SDRG_14723 [Saprolegnia dicli... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL066nonsL066Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR048ngnoR048Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005466NSK005466Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G04160.1NO03G04160.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO03G04160.2NO03G04160.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|522402gene_1612Nannochloropsis oceanica (N. oceanica CCMP1779)gene
MRE11gene775Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G04160.1NO03G04160.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO03G04160.2NO03G04160.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G04160 ID=NO03G04160|Name=NO03G04160|organism=Nannochloropsis oceanica|type=gene|length=2459bp
CACGCACGCTCCCCGCACGACAACACAGGCATTACACGCCGGGCGACGTC
AAGGATGGGTGAACCATGGTACGTTCGACTAGATGGTCTTTGTCTAGAGG
ATACGTTGTGAAGCCGTGGCATTCACTCTGCTGCTCAGCCCGCTCCGTTT
TTCTAAGGCCTCTCAGTCATGCTCTCTTGCAGCCCCATGTGTGGTTCCCA
TACCACGGTCCCTACCCGCCAGCAGCTGGAAACTACCGCATGATTTGCGC
GTATCAGCCTGCATGCTCACGCACCATCTTGTGTACTCAGACCATGCCGC
ATGCTTCGCCATCTCATGGCGTTTTTTTCTGCGTACCCCCCCGCTTCTAT
TCTCTTGCCCTTCCTCAATTCGCTTGTAACCCCAATCATTTATATCATTG
TATGGCTAAAGAACAAAGACATCCATTCTTTCTTCCCTCATCCCTTTTGT
CACATCTCAAAGTGCTCAAACTCCCCCCAAAACCCCAACCCCCCTGCTCT
TTTTTCTTCCCCTTCCCGCACAGCGCCCCAAACGAGCTCCTCCTTGAGCC
ACCTGACGAGAACACGCTCCGCATCATGATCGCAACCGACAACCACGTAG
GCTTCCTGGAGCGGGACCCCGTCCGAGGTCCTGACTCGTTCGCGGCGTTG
GAGGgtaggtctggtcgactaaattggcctgcgtactggagaggatagct
tttggctatcgattcttaatatcaccttttcattacccccgtgtatctca
atcactgtcataaatataaccataagtatgatttgtttgttcaagaagaa
aatgtggtcctggaggggatttccgggtcctctgcgcaagactcaccgcc
caccacctatctacccacccaccctcccctccctccctccctcccaccct
ccccttttctgcgcctagAAATCTTCCTCCGCGCCAAGGAATACCACGTG
GATTTCGTCCTGCTCGGTGGGGACTTGTTTCACGACAATAAACCCTCGCG
CAAGACCATGCATTCGACGATAAGCATCCTCCGTCGCCATTGCCTCGGGG
ATGATCCCGTCTCTTTTCAAGTTATATCCGAGCCCCCGCCCCAGGGCGGG
ACGGAAGGCACGATGGACGGCATGAACAAAGTAGGGAACTTCGCGCACGT
CAATTATGAAGACCCGAATTACGCGGTGGGACTGCCAATTTTTTCGATTC
ATGGCAATCATGATGACCCCTCCAGGGACGGGAACACGGAGCCTTTGTCG
GCGATGGACTTGTTGAGTGTCACCAATCTGGTCAATTATTTCGGAAAGGC
ATCCGCTACTGACAATGTGGAGGTGAGCCCTCTGTTGTTGCGGAAGGGGG
GCACCCTGATGGCGTTGTACGGGCTGGGGAACATGAGGGATGAACGCTTG
AATCGGATGTGGCAGAAAAAGAAGATCAGGTTCCTTAGGCACCGACCCAC
GGGCAGGGACGAGGAGCAGAAGGATTTCTTCTCGCTTTTTGCATTGCACC
AGAACAGGGATACGGGAAGGGGACAGAAAAATTGTGTGCAGGAGAGCATG
ATTCCCGAGTGGATGGATCTGGTGGTGTGGGGgtacgtcaagtgaggggg
agggagggagggagggagggagggaaaaggaaaagtgaatgagttttcat
tttcctgtggccaaaacaaccaattacatatttcctccctccctccccat
ccctccccctccctcccccccccccgcatccagACACGAACACGAATGCC
TCGTCCGCCCCACCCGTTCGCTTGCCGGTGGTTTCTTCATCTCCCAGCCC
GGGTCCTCTGTTGCCACCTCGCTGGTGGAAGGAGAGGCGACTCCGAAGCA
AGTCGGCGTCCTAGATGTGAGGGAAGGAAATTTTCGTCTCTTCCCCGTTC
TCCTCCGACAGgtatggccctcttctctctgtgctcctctgtcttcttcc
cttccttcctcttcttcaaggacacaattttattacacacctctccctcc
cgccttcgcatttctcagGTCCGTCCCTTCATCCTGAAGGCAATCCGCCT
CTCGGCTATCGAGGGCCTGGATCCCAATCATCCCAAGGTCGAAGAACACG
TCACCCTCGTCCTCGAAAAGCAGGTGTGGGCGCTGATCGAGGAAGCGAGG
GAGGAGCACCCGCCCCCTGGCCCCCTTCCTGGACAGACCTTCTCTTTGCT
TCACCCAGAGCAGGTTCTCGTGCGGCTTAAGGTTGAATACACCGGATTTT
TTACGATCAACAATCAGCGGTTTGGGCAGCGATTCGTTGGACACGTGGCG
AACCCCTCCGACATTTTGTTGTTTCACAAGGCGCGGAGGCTGGGGGGGAG
GGAGGAGGAGGAGGAGGAGGAGGGAGGGGGGGGGGGAAGAGGAGGAAGGG
CGGGAGGGGGGGGGATGAACGGTGTGGAGGGGAAAGAGGGGGGGAGGGAG
GGGAGGTGA
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protein sequence of NO03G04160.1

>NO03G04160.1-protein ID=NO03G04160.1-protein|Name=NO03G04160.1|organism=Nannochloropsis oceanica|type=polypeptide|length=624bp
MVRSTRWSLSRGYVVKPWHSLCCSARSVFLRPLSHALLQPHVWFPYHGPY
PPAAGNYRMICAYQPACSRTILCTQTMPHASPSHGVFFCVPPRFYSLALP
QFACNPNHLYHCMAKEQRHPFFLPSSLLSHLKVLKLPPKPQPPCSFFFPF
PHSAPNELLLEPPDENTLRIMIATDNHVGFLERDPVRGPDSFAALEEIFL
RAKEYHVDFVLLGGDLFHDNKPSRKTMHSTISILRRHCLGDDPVSFQVIS
EPPPQGGTEGTMDGMNKVGNFAHVNYEDPNYAVGLPIFSIHGNHDDPSRD
GNTEPLSAMDLLSVTNLVNYFGKASATDNVEVSPLLLRKGGTLMALYGLG
NMRDERLNRMWQKKKIRFLRHRPTGRDEEQKDFFSLFALHQNRDTGRGQK
NCVQESMIPEWMDLVVWGHEHECLVRPTRSLAGGFFISQPGSSVATSLVE
GEATPKQVGVLDVREGNFRLFPVLLRQVRPFILKAIRLSAIEGLDPNHPK
VEEHVTLVLEKQVWALIEEAREEHPPPGPLPGQTFSLLHPEQVLVRLKVE
YTGFFTINNQRFGQRFVGHVANPSDILLFHKARRLGGREEEEEEEGGGGG
RGGRAGGGGMNGVEGKEGGREGR*
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protein sequence of NO03G04160.2

>NO03G04160.2-protein ID=NO03G04160.2-protein|Name=NO03G04160.2|organism=Nannochloropsis oceanica|type=polypeptide|length=476bp
MGEPCAPNELLLEPPDENTLRIMIATDNHVGFLERDPVRGPDSFAALEEI
FLRAKEYHVDFVLLGGDLFHDNKPSRKTMHSTISILRRHCLGDDPVSFQV
ISEPPPQGGTEGTMDGMNKVGNFAHVNYEDPNYAVGLPIFSIHGNHDDPS
RDGNTEPLSAMDLLSVTNLVNYFGKASATDNVEVSPLLLRKGGTLMALYG
LGNMRDERLNRMWQKKKIRFLRHRPTGRDEEQKDFFSLFALHQNRDTGRG
QKNCVQESMIPEWMDLVVWGHEHECLVRPTRSLAGGFFISQPGSSVATSL
VEGEATPKQVGVLDVREGNFRLFPVLLRQVRPFILKAIRLSAIEGLDPNH
PKVEEHVTLVLEKQVWALIEEAREEHPPPGPLPGQTFSLLHPEQVLVRLK
VEYTGFFTINNQRFGQRFVGHVANPSDILLFHKARRLGGREEEEEEEGGG
GGRGGRAGGGGMNGVEGKEGGREGR*
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Synonyms
Publications