NO03G04110, NO03G04110 (gene) Nannochloropsis oceanica

Overview
NameNO03G04110
Unique NameNO03G04110
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1432
Alignment locationchr3:1195189..1196620 +

Link to JBrowse

Properties
Property NameValue
DescriptionAnkyrin repeat protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1195189..1196620 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036770Ankyrin_rpt-contain_sf
IPR020683Ankyrin_rpt-contain_dom
IPR002110Ankyrin_rpt
Homology
[Close]
BLAST of NO03G04110 vs. NCBI_GenBank
Match: EWM29874.1 (ankyrin repeat protein [Nannochloropsis gaditana])

HSP 1 Score: 154.8 bits (390), Expect = 4.100e-34
Identity = 166/300 (55.33%), Postives = 198/300 (66.00%), Query Frame = 0 
Query:    7 VCAAAEAPEASTALASTIYTKALAAAQRNDIRLLTGIWEKHGGRIITEPLPEGSGYIIHHAVKLLRVKSVIWLLEHGADVNAIDRDGETPLCWCATIASFSVRTKALLRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGMNTDDGCIWTAALPENGREMERCRALLKDEVFRREVREVLMEARRR--------FFNVAKDQNEGNDHERKGIEEMKRPRPREGSWRSVAVEEDHVEVEKGRNEEGGEVARRLVDLRDDMMFMRCLQYI 299
            V  AA         A+ ++TKALAAA+RNDI  L  +W    G+ IT      +G+I+H+A K ++ KSV WLLEHGADVNA+DR+GETPLCWCATIA FS RT  L   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGM T+DG  WT ALPE+ +EMERC   LK E+FRREVRE+    R R         +   +    GN  ER  + E  R   R    ++    ED    +  +   G +V+  LVD+ DD MF +CL ++
Sbjct:    7 VLPAANVSYRKGKSAAHVWTKALAAAERNDITTLNKLWGMPEGKFITRNFQGENGHILHYAAKRVKAKSVAWLLEHGADVNAVDREGETPLCWCATIAPFSRRTGVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGMCTNDGQTWTNALPEDRKEMERCEVSLKAEIFRREVREIFWRERVRRQRTHDKSLWTDLEKWKSGN--ERTVLSEESRRTLRARGMQA----EDRRRKDNPQVSNGLDVSWILVDMEDDEMFSKCLGFL 300
The following BLAST results are available for this feature:
BLAST of NO03G04110 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29874.14.100e-3455.33ankyrin repeat protein [Nannochloropsis gaditana][more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL066nonsL066Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR048ngnoR048Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005461NSK005461Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G04110.1NO03G04110.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572867gene_1607Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100106g19gene771Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G04110.1NO03G04110.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G04110 ID=NO03G04110|Name=NO03G04110|organism=Nannochloropsis oceanica|type=gene|length=1432bp
ACAGCGACAGGGCCGCAAAGAGGGGAGCTTCGTGGTGGACGAGGCCCTGA
GCAGCCACATGTCGGCCGCCGCTGTAGTCTGTGCTGCCGCAGAGGCCCCT
GAAGCTTCCACTGCTCTGGCTTCCACCATCTACACCAAGGCTTTAGCGGC
CGCCCAACGCAACGATATAAGATTGTTGACAGGGATCTGGGAGAAGCATG
GAGGCAGAATAATTACCGAACCACTTCCTGAGGGAAGCGGGTACATCATT
CACCACGCAGTGAAGCTTCTGCGTGTGAAGTCTGTCATTTGGCTTCTGGA
ACATGGAGCGGACGTGAATGCAATTGATCGCGACGGCGAGgtacgtcttt
ctttctgtctcatttgttttcttctgctgattgatctcgcgtttctcctg
gaaccgtggtgccgtaaccaacccttcatgcaccactcctccatctcttt
ccccccgacagACTCCCCTTTGTTGGTGCGCAACCATCGCTTCCTTCTCT
GTCCGCACGAAAGCGCTCCTCCGACTTCTCGTCGACGCAGGGGCTGACCC
CAATTGGCAAGACCTCTATGGCTATACTCCTCTCACACACGCTGTCGTGC
GCGGCTCAGTCGACGCCACCCGTCGGGCCCGCGTTCAAGCGCTGCTTGAA
TTAGGCGCGGACCCGCGCGTGAGGGACTATGACGGAAAGGAACCGCTGGA
TTACCTAGGAATGAACACAGATGATGGATGCATATGGACGGCAGCCTTAC
CAGAGAATGGGCGGGAGATGGAACGCTGTCGGGCATTGTTGAAAGATGAG
GTGTTTAGGAGGGAAGTGCGTGAGGTTTTGATGGAGGCGCGTCGTCGTTT
TTTCAACGTGGCTAAAGACCAAAACGAAGGGAATGATCATGAAAGAAAAG
GCATAGAAGAGATGAAGAGACCACGACCGAGAGAAGGAAGCTGGAGGAGC
GTGGCCGTGGAAGAGGATCACGTGGAGGTGGAGAAAGGCAGGAATGAGGA
GGGGGGGGAGGTGGCCAGGCGGTTGGTGGACTTGCGTGACGACATGATGT
TTATGAGATGCTTGCAATATATTTGAATTGTTGGGCTTATAGACAAGCGG
TGTAAAGAATGCTTGGCCTGTGTTTATACATATACATATACATAAATATT
TTGATCCGACGTGCAAATATACATGCACTCCTGTCGGTTTGAGGAGAGCG
ATACCGTGAATGAGATATTTGAATGCAAAAACAATGAGGGAAGATGTAGA
TTCTGGATTGCAGCGATGCCAGGAAAGAGGGGCGGAGAGGACTAAAGACG
GAACATGTCGAAAAAGATGTACCACAGAATAAGGATTACTTCCATTTTCA
TGATTAGACGGGTTTAAAGCTTTCTAGCCGCGTATGCACGGTGAAAAAGG
AATAAGGGGAAAGGCAAATGTTTATAACGAAA
back to top

protein sequence of NO03G04110.1

>NO03G04110.1-protein ID=NO03G04110.1-protein|Name=NO03G04110.1|organism=Nannochloropsis oceanica|type=polypeptide|length=299bp
MSAAAVVCAAAEAPEASTALASTIYTKALAAAQRNDIRLLTGIWEKHGGR
IITEPLPEGSGYIIHHAVKLLRVKSVIWLLEHGADVNAIDRDGETPLCWC
ATIASFSVRTKALLRLLVDAGADPNWQDLYGYTPLTHAVVRGSVDATRRA
RVQALLELGADPRVRDYDGKEPLDYLGMNTDDGCIWTAALPENGREMERC
RALLKDEVFRREVREVLMEARRRFFNVAKDQNEGNDHERKGIEEMKRPRP
REGSWRSVAVEEDHVEVEKGRNEEGGEVARRLVDLRDDMMFMRCLQYI*
back to top
Synonyms
Publications