NO03G03760, NO03G03760 (gene) Nannochloropsis oceanica

Overview
NameNO03G03760
Unique NameNO03G03760
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length878
Alignment locationchr3:1110003..1110880 -

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Properties
Property NameValue
Descriptionalpha-1,2-Mannosidase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1110003..1110880 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0004571mannosyl-oligosaccharide 1,2-alpha-mannosidase activity
GO:0005509calcium ion binding
GO:0016787hydrolase activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR036026Seven-hairpin_glycosidases
IPR001382Glyco_hydro_47
Homology
[Close]
BLAST of NO03G03760 vs. NCBI_GenBank
Match: EWM27051.1 (class member 1 [Nannochloropsis gaditana])

HSP 1 Score: 299.3 bits (765), Expect = 1.100e-77
Identity = 148/209 (70.81%), Postives = 164/209 (78.47%), Query Frame = 0 
Query:    1 MDHLVCYLPGTLALGVYHGLDPEGTQGHMEMAKELMVTCFEFYNHTATGLRVDASN---TARRSSSGSSDRYVKPADAHNILRPETVESLFYLYRVTEDRVYQEWAWQIFVAFEKHAKIETGGYSGLRNVEALDSARIDKMESFFLGETLKYFYLLFADPALLSLDEVVFNTEAHPFPVLALEEDWLVYRGK-GEQPPVAEGKEKEEDV 206
            MDHLVCYLPGTLALGV+HG+DP G  GHMEMA+ELMVTCFEFYN TATGL  + ++       SSS  SD YVKP D HN+LRPETVESLFYLYRVT D VYQEWAWQIF AFE HAKI TGGYSGL NV    S RIDKMESFFLGETLKY +LLF DP+L SLDE V NTEAHPFP+++ EEDWLVY+GK GE+      +E+  DV
Sbjct:  623 MDHLVCYLPGTLALGVHHGIDPTGEGGHMEMARELMVTCFEFYNQTATGLSPEIAHFRVNPSASSSSGSDLYVKPRDTHNMLRPETVESLFYLYRVTGDAVYQEWAWQIFQAFEAHAKIPTGGYSGLENVGDPSSPRIDKMESFFLGETLKYLFLLFEDPSLFSLDEYVLNTEAHPFPIMSPEEDWLVYKGKGGEKDQEGSAQERHADV 831
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BLAST of NO03G03760 vs. NCBI_GenBank
Match: XP_005853501.1 (mannosyl-oligosaccharide alpha-1,2-mannosidase, partial [Nannochloropsis gaditana CCMP526] >EKU22858.1 mannosyl-oligosaccharide alpha-1,2-mannosidase, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 297.4 bits (760), Expect = 4.400e-77
Identity = 147/209 (70.33%), Postives = 164/209 (78.47%), Query Frame = 0 
Query:    1 MDHLVCYLPGTLALGVYHGLDPEGTQGHMEMAKELMVTCFEFYNHTATGLRVDASN---TARRSSSGSSDRYVKPADAHNILRPETVESLFYLYRVTEDRVYQEWAWQIFVAFEKHAKIETGGYSGLRNVEALDSARIDKMESFFLGETLKYFYLLFADPALLSLDEVVFNTEAHPFPVLALEEDWLVYRGK-GEQPPVAEGKEKEEDV 206
            MDHLVCYLPGTLALGV+HG+DP G  GHMEMA+ELMVTCFEFYN TATGL  + ++       SSS  SD YVKP D HN+LRPETVESLFYLYRVT D VYQEWAWQIF AFE HAKI TGGYSGL NV    S RIDKMESFFLGETLKY +LLF +P+L SLDE V NTEAHPFP+++ EEDWLVY+GK GE+      +E+  DV
Sbjct:  140 MDHLVCYLPGTLALGVHHGIDPTGEGGHMEMARELMVTCFEFYNQTATGLSPEIAHFRVNPSASSSSGSDLYVKPRDTHNMLRPETVESLFYLYRVTGDAVYQEWAWQIFQAFEAHAKIPTGGYSGLENVGDPSSPRIDKMESFFLGETLKYLFLLFENPSLFSLDEYVLNTEAHPFPIMSPEEDWLVYKGKGGEKDQEGSAQERHADV 348
[Close]
BLAST of NO03G03760 vs. NCBI_GenBank
Match: XP_005408635.1 (PREDICTED: endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase isoform X1 [Chinchilla lanigera])

HSP 1 Score: 207.6 bits (527), Expect = 4.500e-50
Identity = 104/178 (58.43%), Postives = 125/178 (70.22%), Query Frame = 0 
Query:    1 MDHLVCYLPGTLALGVYHGLDPEGTQGHMEMAKELMVTCFEFYNHTATGLRVDASNTARRSSSGSSDRYVKPADAHNILRPETVESLFYLYRVTEDRVYQEWAWQIFVAFEKHAKIETGGYSGLRNVEALDSAR-IDKMESFFLGETLKYFYLLFADPA-LLSLDEVVFNTEAHPFPV 177
            MDHLVC+LPGTLALGV+HGL  E    HME+A  LM TC++      TGL  + ++    S  G  D  VKPAD HN+LRPETVESLFYLYR T DR YQ+W W+I  +F KH ++ +GGYS + NV+++      DKMESFFLGETLKY YLLF+D   LLSLD  VFNTEAHP P+
Sbjct:  486 MDHLVCFLPGTLALGVHHGLPTE----HMELALALMETCYQMNQQMETGLSPEIAHFNTFSQPGLKDVIVKPADRHNLLRPETVESLFYLYRFTGDRKYQDWGWEILQSFNKHTRVRSGGYSSINNVQSIHKPEPRDKMESFFLGETLKYLYLLFSDDRDLLSLDHYVFNTEAHPLPI 659
[Close]
BLAST of NO03G03760 vs. NCBI_GenBank
Match: XP_005408636.1 (PREDICTED: endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase isoform X2 [Chinchilla lanigera])

HSP 1 Score: 207.6 bits (527), Expect = 4.500e-50
Identity = 104/178 (58.43%), Postives = 125/178 (70.22%), Query Frame = 0 
Query:    1 MDHLVCYLPGTLALGVYHGLDPEGTQGHMEMAKELMVTCFEFYNHTATGLRVDASNTARRSSSGSSDRYVKPADAHNILRPETVESLFYLYRVTEDRVYQEWAWQIFVAFEKHAKIETGGYSGLRNVEALDSAR-IDKMESFFLGETLKYFYLLFADPA-LLSLDEVVFNTEAHPFPV 177
            MDHLVC+LPGTLALGV+HGL  E    HME+A  LM TC++      TGL  + ++    S  G  D  VKPAD HN+LRPETVESLFYLYR T DR YQ+W W+I  +F KH ++ +GGYS + NV+++      DKMESFFLGETLKY YLLF+D   LLSLD  VFNTEAHP P+
Sbjct:  465 MDHLVCFLPGTLALGVHHGLPTE----HMELALALMETCYQMNQQMETGLSPEIAHFNTFSQPGLKDVIVKPADRHNLLRPETVESLFYLYRFTGDRKYQDWGWEILQSFNKHTRVRSGGYSSINNVQSIHKPEPRDKMESFFLGETLKYLYLLFSDDRDLLSLDHYVFNTEAHPLPI 638
[Close]
BLAST of NO03G03760 vs. NCBI_GenBank
Match: XP_013362162.1 (PREDICTED: endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase isoform X3 [Chinchilla lanigera])

HSP 1 Score: 207.6 bits (527), Expect = 4.500e-50
Identity = 104/178 (58.43%), Postives = 125/178 (70.22%), Query Frame = 0 
Query:    1 MDHLVCYLPGTLALGVYHGLDPEGTQGHMEMAKELMVTCFEFYNHTATGLRVDASNTARRSSSGSSDRYVKPADAHNILRPETVESLFYLYRVTEDRVYQEWAWQIFVAFEKHAKIETGGYSGLRNVEALDSAR-IDKMESFFLGETLKYFYLLFADPA-LLSLDEVVFNTEAHPFPV 177
            MDHLVC+LPGTLALGV+HGL  E    HME+A  LM TC++      TGL  + ++    S  G  D  VKPAD HN+LRPETVESLFYLYR T DR YQ+W W+I  +F KH ++ +GGYS + NV+++      DKMESFFLGETLKY YLLF+D   LLSLD  VFNTEAHP P+
Sbjct:  464 MDHLVCFLPGTLALGVHHGLPTE----HMELALALMETCYQMNQQMETGLSPEIAHFNTFSQPGLKDVIVKPADRHNLLRPETVESLFYLYRFTGDRKYQDWGWEILQSFNKHTRVRSGGYSSINNVQSIHKPEPRDKMESFFLGETLKYLYLLFSDDRDLLSLDHYVFNTEAHPLPI 637
[Close]
BLAST of NO03G03760 vs. NCBI_GenBank
Match: XP_003473009.1 (endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase isoform X1 [Cavia porcellus])

HSP 1 Score: 206.5 bits (524), Expect = 1.000e-49
Identity = 104/178 (58.43%), Postives = 126/178 (70.79%), Query Frame = 0 
Query:    1 MDHLVCYLPGTLALGVYHGLDPEGTQGHMEMAKELMVTCFEFYNHTATGLRVDASNTARRSSSGSSDRYVKPADAHNILRPETVESLFYLYRVTEDRVYQEWAWQIFVAFEKHAKIETGGYSGLRNVEALDSAR-IDKMESFFLGETLKYFYLLFA-DPALLSLDEVVFNTEAHPFPV 177
            MDHLVC+LPGTLALGV+HGL  E    HME+A  LM TC++  +   TGL  + ++    S     D  VKPAD HN+LRPETVESLFYLYRVT DR YQ+W W+I  +F K+ ++ +GGYS + NV++       DKMESFFLGETLKY YLLF+ DP LLSLD  VFNTEAHP P+
Sbjct:  480 MDHLVCFLPGTLALGVHHGLPTE----HMELALALMETCYQMNHQMETGLSPEIAHFNTFSRPDLKDVIVKPADRHNLLRPETVESLFYLYRVTGDRKYQDWGWEILQSFNKYTRVRSGGYSSINNVQSTQKPEPRDKMESFFLGETLKYLYLLFSDDPDLLSLDHYVFNTEAHPLPI 653
[Close]
BLAST of NO03G03760 vs. NCBI_GenBank
Match: XP_013011260.1 (endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase isoform X2 [Cavia porcellus])

HSP 1 Score: 206.5 bits (524), Expect = 1.000e-49
Identity = 104/178 (58.43%), Postives = 126/178 (70.79%), Query Frame = 0 
Query:    1 MDHLVCYLPGTLALGVYHGLDPEGTQGHMEMAKELMVTCFEFYNHTATGLRVDASNTARRSSSGSSDRYVKPADAHNILRPETVESLFYLYRVTEDRVYQEWAWQIFVAFEKHAKIETGGYSGLRNVEALDSAR-IDKMESFFLGETLKYFYLLFA-DPALLSLDEVVFNTEAHPFPV 177
            MDHLVC+LPGTLALGV+HGL  E    HME+A  LM TC++  +   TGL  + ++    S     D  VKPAD HN+LRPETVESLFYLYRVT DR YQ+W W+I  +F K+ ++ +GGYS + NV++       DKMESFFLGETLKY YLLF+ DP LLSLD  VFNTEAHP P+
Sbjct:  365 MDHLVCFLPGTLALGVHHGLPTE----HMELALALMETCYQMNHQMETGLSPEIAHFNTFSRPDLKDVIVKPADRHNLLRPETVESLFYLYRVTGDRKYQDWGWEILQSFNKYTRVRSGGYSSINNVQSTQKPEPRDKMESFFLGETLKYLYLLFSDDPDLLSLDHYVFNTEAHPLPI 538
[Close]
BLAST of NO03G03760 vs. NCBI_GenBank
Match: XP_007230543.2 (endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase isoform X1 [Astyanax mexicanus])

HSP 1 Score: 204.5 bits (519), Expect = 3.800e-49
Identity = 102/178 (57.30%), Postives = 132/178 (74.16%), Query Frame = 0 
Query:    1 MDHLVCYLPGTLALGVYHGLDPEGTQGHMEMAKELMVTCFEFYNHTATGLRVDASNTARRSSSGSSDRYVKPADAHNILRPETVESLFYLYRVTEDRVYQEWAWQIFVAFEKHAKIETGGYSGLRNV-EALDSARIDKMESFFLGETLKYFYLLFA-DPALLSLDEVVFNTEAHPFPV 177
            MDHLVC+LPGTLALG +HGLD E    HME+AK+LM TC++ Y    TGL  + ++   ++ S + D  VK AD HN+LRPETVESLFY+YR T+D+ YQ W W+I  +F K+ ++ETGGY+ + NV +  + +  DKMESFFLGETLKYFYLLF+ DP L+SLD+ VFNTEAH  P+
Sbjct:  455 MDHLVCFLPGTLALGAHHGLDAE----HMELAKQLMETCYQMYAQMDTGLAPEIAHFNMQTGS-AQDVDVKLADRHNLLRPETVESLFYMYRFTKDKKYQNWGWEILQSFNKYTRVETGGYTSINNVRDPKNPSPRDKMESFFLGETLKYFYLLFSDDPNLVSLDKYVFNTEAHALPI 627
[Close]
BLAST of NO03G03760 vs. NCBI_GenBank
Match: XP_007230544.2 (endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase isoform X2 [Astyanax mexicanus])

HSP 1 Score: 204.5 bits (519), Expect = 3.800e-49
Identity = 102/178 (57.30%), Postives = 132/178 (74.16%), Query Frame = 0 
Query:    1 MDHLVCYLPGTLALGVYHGLDPEGTQGHMEMAKELMVTCFEFYNHTATGLRVDASNTARRSSSGSSDRYVKPADAHNILRPETVESLFYLYRVTEDRVYQEWAWQIFVAFEKHAKIETGGYSGLRNV-EALDSARIDKMESFFLGETLKYFYLLFA-DPALLSLDEVVFNTEAHPFPV 177
            MDHLVC+LPGTLALG +HGLD E    HME+AK+LM TC++ Y    TGL  + ++   ++ S + D  VK AD HN+LRPETVESLFY+YR T+D+ YQ W W+I  +F K+ ++ETGGY+ + NV +  + +  DKMESFFLGETLKYFYLLF+ DP L+SLD+ VFNTEAH  P+
Sbjct:  454 MDHLVCFLPGTLALGAHHGLDAE----HMELAKQLMETCYQMYAQMDTGLAPEIAHFNMQTGS-AQDVDVKLADRHNLLRPETVESLFYMYRFTKDKKYQNWGWEILQSFNKYTRVETGGYTSINNVRDPKNPSPRDKMESFFLGETLKYFYLLFSDDPNLVSLDKYVFNTEAHALPI 626
[Close]
BLAST of NO03G03760 vs. NCBI_GenBank
Match: XP_004593674.1 (PREDICTED: endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase, partial [Ochotona princeps])

HSP 1 Score: 204.1 bits (518), Expect = 5.000e-49
Identity = 104/178 (58.43%), Postives = 125/178 (70.22%), Query Frame = 0 
Query:    1 MDHLVCYLPGTLALGVYHGLDPEGTQGHMEMAKELMVTCFEFYNHTATGLRVDASNTARRSSSGSSDRYVKPADAHNILRPETVESLFYLYRVTEDRVYQEWAWQIFVAFEKHAKIETGGYSGLRNV-EALDSARIDKMESFFLGETLKYFYLLFA-DPALLSLDEVVFNTEAHPFPV 177
            MDHLVC+LPGTLALGV+HGL  E    HME+A  LM TC++      TGL  + ++      +G  D  VKP+D HN+LRPETVESLFYLYRVT DR YQ+W W+I  +F KH ++ +GGYS + NV +A      DKMESFFLGETLKY YLLF+ D  LLSLD  VFNTEAHP P+
Sbjct:  478 MDHLVCFLPGTLALGVHHGLPAE----HMELALLLMETCYQMNRQMQTGLSPEIAHFNLYPKAGYQDVQVKPSDRHNLLRPETVESLFYLYRVTRDRKYQDWGWEILQSFNKHTRVPSGGYSSINNVQDAQRPQPRDKMESFFLGETLKYLYLLFSEDAGLLSLDTHVFNTEAHPLPI 651
The following BLAST results are available for this feature:
BLAST of NO03G03760 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM27051.11.100e-7770.81class member 1 [Nannochloropsis gaditana][more]
XP_005853501.14.400e-7770.33mannosyl-oligosaccharide alpha-1,2-mannosidase, pa... [more]
XP_005408635.14.500e-5058.43PREDICTED: endoplasmic reticulum mannosyl-oligosac... [more]
XP_005408636.14.500e-5058.43PREDICTED: endoplasmic reticulum mannosyl-oligosac... [more]
XP_013362162.14.500e-5058.43PREDICTED: endoplasmic reticulum mannosyl-oligosac... [more]
XP_003473009.11.000e-4958.43endoplasmic reticulum mannosyl-oligosaccharide 1,2... [more]
XP_013011260.11.000e-4958.43endoplasmic reticulum mannosyl-oligosaccharide 1,2... [more]
XP_007230543.23.800e-4957.30endoplasmic reticulum mannosyl-oligosaccharide 1,2... [more]
XP_007230544.23.800e-4957.30endoplasmic reticulum mannosyl-oligosaccharide 1,2... [more]
XP_004593674.15.000e-4958.43PREDICTED: endoplasmic reticulum mannosyl-oligosac... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL068nonsL068Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR052ngnoR052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G03760.1NO03G03760.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|645801gene_1574Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G03760.1NO03G03760.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G03760 ID=NO03G03760|Name=NO03G03760|organism=Nannochloropsis oceanica|type=gene|length=878bp
ATGGACCATTTAGTCTGTTATTTACCTGGAACTTTAGCCCTGGGCGTCTA
CCATGGCCTGGACCCCGAGGGGACACAAGGACACATGGAGATGGCAAAAG
AGTTGATGGTCACTTGTTTTGAGTTCTACAACCATACAGCCACGGGACTT
AGGGTGGATGCGTCCAATACTGCCCGGCGGTCCTCGTCTGGGTCCTCAGA
TAGGTATGTAAAACCAGCAGACGCCCACAATATTCTGAGACCCGAGACGG
TGGAAAGTTTATTTTACCTTTACCGAGTGACGGAGGACAGGGTATACCAG
GAGTGGGCGTGGCAGATCTTTGTGGCGTTTGAGAAGCATGCCAAGATTGA
GACGGGAGGTTACTCGGGTTTGCGGAATGTCGAGGCGCTGGACTCGGCGC
GGATTGATAAAATGGAGAGCTTCTTTTTAGGGGAGACGTTGAAGTATTTT
TATCTCTTGTTTGCGGACCCGGCACTGTTGTCGTTGGATGAGGTGGTGTT
CAATACGGAGGCACATCCCTTCCCGGTTTTAGCTCTGGAGGAGGATTGGT
TGGTGTATAGAGGGAAGGGAGAGCAACCTCCCGTTGCTGAAGGGAAGGAA
AAGGAGGAGGATGTCGAGGTCAAGGCGGAGGAGATGGAGGCTGAGAAAGG
GAGCGCAAGGGAGGAGAACGTGAAAGAGGAAAGAGATGAGGAGGAAGGGA
TAGAAGAGATGGAAGAGGGGTTTAGAAGAGAAGAGGAGGATGAAGTGTTG
ACGGCTGAAATCTAGAGTGTGAGAGGAAGGGGGGCGAAGGCAAGTAGGGT
GGGAGAGGAAGAACTTGGGCTTGGTGTGATTCAAATGACTGATGAAATGA
GAAGGAGACAGACGACTGTGAAAGAGTA
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protein sequence of NO03G03760.1

>NO03G03760.1-protein ID=NO03G03760.1-protein|Name=NO03G03760.1|organism=Nannochloropsis oceanica|type=polypeptide|length=255bp
MDHLVCYLPGTLALGVYHGLDPEGTQGHMEMAKELMVTCFEFYNHTATGL
RVDASNTARRSSSGSSDRYVKPADAHNILRPETVESLFYLYRVTEDRVYQ
EWAWQIFVAFEKHAKIETGGYSGLRNVEALDSARIDKMESFFLGETLKYF
YLLFADPALLSLDEVVFNTEAHPFPVLALEEDWLVYRGKGEQPPVAEGKE
KEEDVEVKAEEMEAEKGSAREENVKEERDEEEGIEEMEEGFRREEEDEVL
TAEI*
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Synonyms
Publications