NO03G03010, NO03G03010 (gene) Nannochloropsis oceanica

Overview
NameNO03G03010
Unique NameNO03G03010
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length769
Alignment locationchr3:902478..903246 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:902478..903246 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO03G03010 vs. NCBI_GenBank
Match: EWM29735.1 (hypothetical protein Naga_100022g46 [Nannochloropsis gaditana])

HSP 1 Score: 184.1 bits (466), Expect = 2.900e-43
Identity = 104/137 (75.91%), Postives = 113/137 (82.48%), Query Frame = 0
Query:    1 MFAARRVFARTLALRPAMAVGTRSGVQAPTQIVRRTMAGHGSAPPATGWEGEVRKVLKEDWQVVCGIMGFYTTLYLISKLFTGGAKAVPEAVAXXXXXXXXXXXAVSMADDKFSDYVSVPENMLKWEQSLNDPKAYE 138
            MFAARR+ A + ALRPA    T    QAPT++VRRT+AGHGSAPPATGWEGEVRKVLKEDWQVVCGIMGFYTTLYL+SKLF+GG         XXXXXXXXXXX +SMADDKFS+YV   ENMLKWEQSLNDPKAYE
Sbjct:    1 MFAARRIVAHSSALRPAFTHAT-GRAQAPTRVVRRTLAGHGSAPPATGWEGEVRKVLKEDWQVVCGIMGFYTTLYLVSKLFSGGKXXXXXXXXXXXXXXXXXXXVISMADDKFSEYVGNSENMLKWEQSLNDPKAYE 136          
BLAST of NO03G03010 vs. NCBI_GenBank
Match: XP_008862972.1 (hypothetical protein H310_01599 [Aphanomyces invadans] >ETW09167.1 hypothetical protein H310_01599 [Aphanomyces invadans])

HSP 1 Score: 63.2 bits (152), Expect = 7.500e-7
Identity = 41/121 (33.88%), Postives = 51/121 (42.15%), Query Frame = 0
Query:   11 TLALRPAMAVGTRSGVQAPTQIVRRTMAGHGSAPPATGWEGEVRKVLKEDWQVVCGIMGFYTTLYLISKLFTGGAKAVPEAVAXXXXXXXXXXXAVSMADDKFSDYVSVPENMLKWEQSLN 132
            T A++PA A G   G           MA HG  P  TG E  +R  L  D  +V   +GFYT L       TG    V E  A             S+ DD F ++  VP N  KWE+SL+
Sbjct:    9 TRAVKPAAAAGQTRG-----------MASHGPPPTYTGLEATIRAKLPNDHDIVLATLGFYTVLTAPLWFPTGKKAKVEEPAASPAADVNASTEIPSLFDDNFDEWSKVPGNFAKWEKSLD 118          
BLAST of NO03G03010 vs. NCBI_GenBank
Match: XP_012196091.1 (hypothetical protein SPRG_02150 [Saprolegnia parasitica CBS 223.65] >KDO33343.1 hypothetical protein SPRG_02150 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 63.2 bits (152), Expect = 7.500e-7
Identity = 41/100 (41.00%), Postives = 50/100 (50.00%), Query Frame = 0
Query:   35 RTMAGHG-SAPPATGWEGEVRKVLKEDWQVVCGIMGFYTTLYLISKLFTGGAKAVP--EAVAXXXXXXXXXXXAVSMADDKFSDYVSVPENMLKWEQSLN 132
            R MAGH  S PP TG E  +R  L ED+Q+V   +G YT L      F  G K  P  EAVA             S+ DD F ++  V  N+ KWE+SLN
Sbjct:   18 RGMAGHAHSGPPPTGIEAVIRSKLPEDYQIVMATLGIYTVL-TAPLWFPSGKKEAPKVEAVAAPTSTTSVIP---SIIDDSFEEWAKVAGNIAKWEESLN 113          
BLAST of NO03G03010 vs. NCBI_GenBank
Match: OQR91724.1 (hypothetical protein ACHHYP_04440 [Achlya hypogyna])

HSP 1 Score: 63.2 bits (152), Expect = 7.500e-7
Identity = 41/100 (41.00%), Postives = 50/100 (50.00%), Query Frame = 0
Query:   35 RTMAGHG-SAPPATGWEGEVRKVLKEDWQVVCGIMGFYTTLYLISKLFTGGAKAVP--EAVAXXXXXXXXXXXAVSMADDKFSDYVSVPENMLKWEQSLN 132
            R MAGH  S PP TG E  +R  L ED+Q+V   +G YT L      F  G K  P  EAVA             S+ DD F ++  V  N+ KWE+SLN
Sbjct:   32 RGMAGHAHSGPPPTGIEAVIRSKLPEDYQIVMATLGIYTVL-SAPLWFPSGKKEAPKVEAVAAPSSATSVIP---SIIDDSFEEWAKVAGNLAKWEESLN 127          
BLAST of NO03G03010 vs. NCBI_GenBank
Match: OQS07748.1 (hypothetical protein THRCLA_20072 [Thraustotheca clavata])

HSP 1 Score: 62.8 bits (151), Expect = 9.800e-7
Identity = 38/98 (38.78%), Postives = 50/98 (51.02%), Query Frame = 0
Query:   35 RTMAGHG-SAPPATGWEGEVRKVLKEDWQVVCGIMGFYTTLYLISKLFTGGAKAVPEAVAXXXXXXXXXXXAVSMADDKFSDYVSVPENMLKWEQSLN 132
            R MAGH  S PP TG E  +R  L ED+Q+V   +G YT   L + L+   +K  PEA               S+ DD F ++  V  N+ KWE+SLN
Sbjct:   18 RGMAGHAHSGPPPTGIEAVIRSKLPEDYQIVMATLGIYTV--LSAPLWWPSSKK-PEAKVEAVAPSSGSSVIPSIIDDSFEEWAKVAGNLAKWEESLN 112          
The following BLAST results are available for this feature:
BLAST of NO03G03010 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 5
Position :
0
Zoom :
x 1
100200300400500600700SequenceEWM29735.1XP_008862972.1XP_012196091.1OQR91724.1OQS07748.1
Match NameE-valueIdentityDescription
EWM29735.12.900e-4375.91hypothetical protein Naga_100022g46 [Nannochlorops... [more]
XP_008862972.17.500e-733.88hypothetical protein H310_01599 [Aphanomyces invad... [more]
XP_012196091.17.500e-741.00hypothetical protein SPRG_02150 [Saprolegnia paras... [more]
OQR91724.17.500e-741.00hypothetical protein ACHHYP_04440 [Achlya hypogyna... [more]
OQS07748.19.800e-738.78hypothetical protein THRCLA_20072 [Thraustotheca c... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL068nonsL068Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR052ngnoR052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005595NSK005595Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G03010.1NO03G03010.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572400gene_1494Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100022g46gene895Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G03010.1NO03G03010.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G03010 ID=NO03G03010|Name=NO03G03010|organism=Nannochloropsis oceanica|type=gene|length=769bp
ATGTTTGCCGCTCGTCGAGTCTTTGCGCGCACGTTGGCTCTGCGACCTGC
CATGGCTGTCGGCACCAGGTCAGGCGTCCAGgtaagaagcaaagagtgtg
ggggggggatatgaatgaggctccacgcgcctttgtcctggccttggtcc
tcatcctctccttctccgcatctacctacacaattagGCCCCGACTCAGA
TCGTGCGGCGGACGATGGCTGGGCACGGATCTGCTCCTCCGGCCACGGGT
TGGGAGGGCGAGGTCCGCAAGGTGCTCAAGGAGGACTGGCAGGTGGTCTG
CGGCATCATGGGGTTCTACACCACACTTTACCTCATCTCCAAGCTCTTTA
CGGGCGGTGCCAAGGCCGTGCCTGAGGCGGgtacgagaattgggggagat
tttggggaaattgacttacgtctctccacgttttaagttttgtttgggta
catcactatgttctccccaacagctctcctttctcttgtcttgtaatttg
gagggggaatccggtttagtggacctcgataagataacgtagcaagacct
actgcttttcttaaccttcttccttcccccttcaacgaaatccaatcttc
ctctctacactctctcttcacaatgacagTGGCGGCTGCCCCCGCGGCTG
CGAGCGCGAGCAACGAGGCAGTGTCCATGGCTGACGACAAATTTTCCGAT
TACGTGTCCGTTCCCGAAAACATGCTTAAGTGGGAGCAGAGCCTGAACGA
TCCAAAGGCGTACGAGTAA
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protein sequence of NO03G03010.1

>NO03G03010.1-protein ID=NO03G03010.1-protein|Name=NO03G03010.1|organism=Nannochloropsis oceanica|type=polypeptide|length=138bp
MFAARRVFARTLALRPAMAVGTRSGVQAPTQIVRRTMAGHGSAPPATGWE
GEVRKVLKEDWQVVCGIMGFYTTLYLISKLFTGGAKAVPEAVAAAPAAAS
ASNEAVSMADDKFSDYVSVPENMLKWEQSLNDPKAYE*
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Synonyms
Publications