NO03G01740, NO03G01740 (gene) Nannochloropsis oceanica

Overview
NameNO03G01740
Unique NameNO03G01740
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length666
Alignment locationchr3:546821..547486 -

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Properties
Property NameValue
Description40S ribosomal protein S21
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:546821..547486 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0005198structural molecule activity
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
GO:0005840ribosome
Vocabulary: INTERPRO
TermDefinition
IPR001931Ribosomal_S21e
Homology
[Close]
BLAST of NO03G01740 vs. NCBI_GenBank
Match: EWM29622.1 (40s ribosomal protein s21 [Nannochloropsis gaditana])

HSP 1 Score: 147.1 bits (370), Expect = 2.300e-32
Identity = 68/79 (86.08%), Postives = 75/79 (94.94%), Query Frame = 0 
Query:    1 MQNEAGQNVDLYIPRKCSWTNRVVHSKDHAAVQINVANVDANGVYTQGDFKTLALAGYIRAKGEADSAFTELAKKADSE 80
            MQNEAGQNVDLYIPRKCSWTNRV+HSKDHAAVQ+NVANVDA+GVY QGD KT+A+AGYIRAKGEAD+A TE+ KKADSE
Sbjct:    1 MQNEAGQNVDLYIPRKCSWTNRVIHSKDHAAVQVNVANVDASGVYLQGDLKTIAMAGYIRAKGEADAAMTEMVKKADSE 79
[Close]
BLAST of NO03G01740 vs. NCBI_GenBank
Match: GAX94694.1 (40S ribosomal protein S21 putative [Pythium insidiosum])

HSP 1 Score: 114.8 bits (286), Expect = 1.300e-22
Identity = 52/79 (65.82%), Postives = 69/79 (87.34%), Query Frame = 0 
Query:    1 MQNEAGQNVDLYIPRKCSWTNRVVHSKDHAAVQINVANVDANGVYTQGDFKTLALAGYIRAKGEADSAFTELAKKADSE 80
            MQN AGQN+D+YIPRKCSWTNR++ +KDHA+VQ+++A V+ANGVYT G+  ++ALAGYIR KGE+D A TELA++ DS+
Sbjct:    1 MQNAAGQNIDIYIPRKCSWTNRIIAAKDHASVQLSIARVNANGVYT-GETDSIALAGYIRGKGESDMAVTELARQIDSK 78
[Close]
BLAST of NO03G01740 vs. NCBI_GenBank
Match: XP_009837024.1 (hypothetical protein H257_11716 [Aphanomyces astaci] >ETV73598.1 hypothetical protein H257_11716 [Aphanomyces astaci])

HSP 1 Score: 113.6 bits (283), Expect = 2.800e-22
Identity = 53/79 (67.09%), Postives = 66/79 (83.54%), Query Frame = 0 
Query:    1 MQNEAGQNVDLYIPRKCSWTNRVVHSKDHAAVQINVANVDANGVYTQGDFKTLALAGYIRAKGEADSAFTELAKKADSE 80
            MQN+AGQN+D+YIPRKCSWTNR++ +KDHA+VQI VA VDANGVYT G     AL+GYIRAKGE D+A T+L +KA+ +
Sbjct:    1 MQNDAGQNIDIYIPRKCSWTNRILSAKDHASVQIAVAKVDANGVYT-GQNDVYALSGYIRAKGEGDAALTDLVRKAEEK 78
[Close]
BLAST of NO03G01740 vs. NCBI_GenBank
Match: OWY90307.1 (40S ribosomal protein S21 [Phytophthora megakarya])

HSP 1 Score: 113.2 bits (282), Expect = 3.700e-22
Identity = 53/79 (67.09%), Postives = 67/79 (84.81%), Query Frame = 0 
Query:    1 MQNEAGQNVDLYIPRKCSWTNRVVHSKDHAAVQINVANVDANGVYTQGDFKTLALAGYIRAKGEADSAFTELAKKADSE 80
            MQNEAGQ++D+YIPRKCSWTNR++ +KDHA+VQINV  V+ANGV+T G+  T ALAGYIR  GE D A TELA++AD++
Sbjct:    1 MQNEAGQSIDIYIPRKCSWTNRILAAKDHASVQINVGRVNANGVFT-GESDTFALAGYIRHHGEGDQAITELARQADAK 78
[Close]
BLAST of NO03G01740 vs. NCBI_GenBank
Match: XP_008876419.1 (hypothetical protein H310_11494 [Aphanomyces invadans] >ETV94828.1 hypothetical protein H310_11494 [Aphanomyces invadans])

HSP 1 Score: 112.8 bits (281), Expect = 4.800e-22
Identity = 53/79 (67.09%), Postives = 65/79 (82.28%), Query Frame = 0 
Query:    1 MQNEAGQNVDLYIPRKCSWTNRVVHSKDHAAVQINVANVDANGVYTQGDFKTLALAGYIRAKGEADSAFTELAKKADSE 80
            MQN+AGQN+D+YIPRKCSWTNR++ +KDHA+VQI VA VDANGVYT G     AL+GYIRAKGE D A T+L +KA+ +
Sbjct:    1 MQNDAGQNIDIYIPRKCSWTNRILSAKDHASVQIAVAKVDANGVYT-GQNDVYALSGYIRAKGEGDHALTDLVRKAEEK 78
[Close]
BLAST of NO03G01740 vs. NCBI_GenBank
Match: XP_002903095.1 (40S ribosomal protein S21 [Phytophthora infestans T30-4] >XP_008911223.1 hypothetical protein PPTG_15683 [Phytophthora parasitica INRA-310] >EEY55519.1 40S ribosomal protein S21 [Phytophthora infestans T30-4] >ETI38034.1 hypothetical protein F443_16131 [Phytophthora parasitica P1569] >ETK78248.1 hypothetical protein L915_15677 [Phytophthora parasitica] >ETL31683.1 hypothetical protein L916_15572 [Phytophthora parasitica] >ETL84913.1 hypothetical protein L917_15395 [Phytophthora parasitica] >ETM38058.1 hypothetical protein L914_15529 [Phytophthora parasitica] >ETM38096.1 hypothetical protein L914_15527 [Phytophthora parasitica] >ETN03450.1 hypothetical protein PPTG_15683 [Phytophthora parasitica INRA-310] >ETO66803.1 hypothetical protein F444_16116 [Phytophthora parasitica P1976] >ETP07924.1 hypothetical protein F441_15960 [Phytophthora parasitica CJ01A1] >ETP35954.1 hypothetical protein F442_15984 [Phytophthora parasitica P10297] >KUF76764.1 40S ribosomal protein S21 [Phytophthora nicotianae] >KUF95771.1 Voltage-gated potassium channel subunit beta-3 [Phytophthora nicotianae] >POM70311.1 40S ribosomal protein S21 [Phytophthora palmivora var. palmivora])

HSP 1 Score: 112.8 bits (281), Expect = 4.800e-22
Identity = 53/79 (67.09%), Postives = 67/79 (84.81%), Query Frame = 0 
Query:    1 MQNEAGQNVDLYIPRKCSWTNRVVHSKDHAAVQINVANVDANGVYTQGDFKTLALAGYIRAKGEADSAFTELAKKADSE 80
            MQNEAGQ++D+YIPRKCSWTNR++ +KDHA+VQINV  V+ANGV+T G+  T ALAGYIR  GE D A TELA++AD++
Sbjct:    1 MQNEAGQSIDIYIPRKCSWTNRILAAKDHASVQINVGRVNANGVFT-GESDTFALAGYIRHHGEGDMAITELARQADAK 78
[Close]
BLAST of NO03G01740 vs. NCBI_GenBank
Match: XP_008618136.1 (30S ribosomal protein S21e [Saprolegnia diclina VS20] >XP_012208883.1 30S ribosomal protein S21e [Saprolegnia parasitica CBS 223.65] >EQC28488.1 30S ribosomal protein S21e [Saprolegnia diclina VS20] >KDO20427.1 30S ribosomal protein S21e [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 112.5 bits (280), Expect = 6.300e-22
Identity = 55/79 (69.62%), Postives = 64/79 (81.01%), Query Frame = 0 
Query:    1 MQNEAGQNVDLYIPRKCSWTNRVVHSKDHAAVQINVANVDANGVYTQGDFKTLALAGYIRAKGEADSAFTELAKKADSE 80
            MQN AGQN+DLYIPRKCSWTNR++ +KDHA+VQI VA VDANGVYT G     ALAGYIR KGE D A TELA++A+ +
Sbjct:    1 MQNSAGQNIDLYIPRKCSWTNRILAAKDHASVQIAVAQVDANGVYT-GHNDVYALAGYIRNKGEGDHALTELARRAEEK 78
[Close]
BLAST of NO03G01740 vs. NCBI_GenBank
Match: XP_009530842.1 (hypothetical protein PHYSODRAFT_286615 [Phytophthora sojae] >EGZ13413.1 hypothetical protein PHYSODRAFT_286615 [Phytophthora sojae])

HSP 1 Score: 111.3 bits (277), Expect = 1.400e-21
Identity = 52/79 (65.82%), Postives = 66/79 (83.54%), Query Frame = 0 
Query:    1 MQNEAGQNVDLYIPRKCSWTNRVVHSKDHAAVQINVANVDANGVYTQGDFKTLALAGYIRAKGEADSAFTELAKKADSE 80
            MQNEAGQ++D+YIPRKCSWTNR++ +KDHA+VQINV  V+ANGV+T G+  T ALAGYIR  GE D A TELA++ D++
Sbjct:    1 MQNEAGQSIDIYIPRKCSWTNRILAAKDHASVQINVGRVNANGVFT-GESDTYALAGYIRHHGEGDQAITELARQTDAK 78
[Close]
BLAST of NO03G01740 vs. NCBI_GenBank
Match: XP_012211765.1 (30S ribosomal protein S21e [Saprolegnia parasitica CBS 223.65] >KDO17530.1 30S ribosomal protein S21e [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 111.3 bits (277), Expect = 1.400e-21
Identity = 55/79 (69.62%), Postives = 64/79 (81.01%), Query Frame = 0 
Query:    1 MQNEAGQNVDLYIPRKCSWTNRVVHSKDHAAVQINVANVDANGVYTQGDFKTLALAGYIRAKGEADSAFTELAKKADSE 80
            MQN AGQN+DLYIPRKCSWTNR++ +KDHA+VQI VA VDANGVYT G     ALAGYIR KGE D A TELA++A+ +
Sbjct:    1 MQNLAGQNIDLYIPRKCSWTNRILAAKDHASVQIAVAQVDANGVYT-GHNDVYALAGYIRNKGEGDHALTELARRAEEK 78
[Close]
BLAST of NO03G01740 vs. NCBI_GenBank
Match: XP_024573802.1 (40s ribosomal protein s21 [Plasmopara halstedii] >CEG37433.1 40s ribosomal protein s21 [Plasmopara halstedii])

HSP 1 Score: 111.3 bits (277), Expect = 1.400e-21
Identity = 52/79 (65.82%), Postives = 67/79 (84.81%), Query Frame = 0 
Query:    1 MQNEAGQNVDLYIPRKCSWTNRVVHSKDHAAVQINVANVDANGVYTQGDFKTLALAGYIRAKGEADSAFTELAKKADSE 80
            MQNEAGQ++D+YIPRKCSWTNR++ +KDHA+VQINV  V+ANGV+T G+  T ALAGYIR  GE D A TEL+++AD++
Sbjct:    1 MQNEAGQSIDIYIPRKCSWTNRILAAKDHASVQINVGRVNANGVFT-GESDTFALAGYIRHHGEGDIAITELSRQADAK 78
The following BLAST results are available for this feature:
BLAST of NO03G01740 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM29622.12.300e-3286.0840s ribosomal protein s21 [Nannochloropsis gaditan... [more]
GAX94694.11.300e-2265.8240S ribosomal protein S21 putative [Pythium insidi... [more]
XP_009837024.12.800e-2267.09hypothetical protein H257_11716 [Aphanomyces astac... [more]
OWY90307.13.700e-2267.0940S ribosomal protein S21 [Phytophthora megakarya][more]
XP_008876419.14.800e-2267.09hypothetical protein H310_11494 [Aphanomyces invad... [more]
XP_002903095.14.800e-2267.0940S ribosomal protein S21 [Phytophthora infestans ... [more]
XP_008618136.16.300e-2269.6230S ribosomal protein S21e [Saprolegnia diclina VS... [more]
XP_009530842.11.400e-2165.82hypothetical protein PHYSODRAFT_286615 [Phytophtho... [more]
XP_012211765.11.400e-2169.6230S ribosomal protein S21e [Saprolegnia parasitica... [more]
XP_024573802.11.400e-2165.8240s ribosomal protein s21 [Plasmopara halstedii] >... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL070nonsL070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR053ngnoR053Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005727NSK005727Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G01740.1NO03G01740.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571857gene_1358Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100050g5gene1012Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G01740.1NO03G01740.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G01740 ID=NO03G01740|Name=NO03G01740|organism=Nannochloropsis oceanica|type=gene|length=666bp
ATGCAAAACGAAGCTGGTCAAAACGTGGATCTCTACATCCCCCGCAAATG
gtgagtactcttactgaagagagagagcacgatagggggataggcgcagc
gcgtagaggaaagggaggattccacgtgtggtggcaaggcgttctgactt
aatgtgcctgcactaccatgagacgtaaagagctaaagagctgtatagtg
tgggttgtgcataatgaaggtctaattgtttcacatggtgcccttttccc
gatttctccctaccccatcatcacagCTCCTGGACCAACCGCGTTGTCCA
CTCTAAGGACCACGCCGCCGTACAGgtaattacacggagcagtagagtac
aagggaatagacgaggataagggaactgggtttgatacgtgctggcaggc
gttattttcgttcctaagtgatcgtagtggtgtaccctgtacttgttatc
gtgttcggcgtcgaaaggatcaggagctcatctctctcctttccctctct
ttacaccacacctgacctacagATCAACGTTGCCAATGTGGATGCTAACG
GTGTGTACACGCAGGGGGACTTCAAGACCCTTGCCTTGGCTGGCTACATC
CGTGCCAAGGGAGAGGCGGACTCTGCGTTTACGGAGCTGGCAAAGAAGGC
TGACAGCGAGATGTAA
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protein sequence of NO03G01740.1

>NO03G01740.1-protein ID=NO03G01740.1-protein|Name=NO03G01740.1|organism=Nannochloropsis oceanica|type=polypeptide|length=81bp
MQNEAGQNVDLYIPRKCSWTNRVVHSKDHAAVQINVANVDANGVYTQGDF
KTLALAGYIRAKGEADSAFTELAKKADSEM*
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Synonyms
Publications