NO03G00620, NO03G00620 (gene) Nannochloropsis oceanica

Overview
NameNO03G00620
Unique NameNO03G00620
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1352
Alignment locationchr3:197538..198889 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:197538..198889 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO03G00620 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL065nonsL065Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR053ngnoR053Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR050ngnoR050Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G00620.1NO03G00620.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO03G00620.2NO03G00620.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|645268gene_1240Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G00620.1NO03G00620.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO03G00620.2NO03G00620.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G00620 ID=NO03G00620|Name=NO03G00620|organism=Nannochloropsis oceanica|type=gene|length=1352bp
ATGCGAAGCGGCAGCGGGTGGGAGAAAGGGAGGGAGGGGAGGAGGGGGGG
GGGAGGAAGAGGGTGTGGCAGGAGAGGGGCAAGTGCCGACGGTGCTGGAC
ACGACGCAACTGCAGAgtacgtgtggaaggggggttggggaggagagaga
gagggagggagggagggaaggagggggtacttagggtgttgtgctgccta
cttacatgagagccagatcctgagacacaatagagacatctctacctatg
cacacgtccacacacccacacgaccccacagACTCCCTCTTCCTCATGCT
TCAGGGCGGGGAGGCCTCGCGGGCGAGTGCTCGGCATCAACTGCTGCGAC
TCGTCTGTCAAGCTGTGGAGAAgtaggtgcaagggagggagggagggagg
gaggggagaggggatggaaggacatacaaatccgaacgagaccatcgata
cacattcacctcgtccctccctcccttcctccctccctccctccctcccc
tcaagGGCGGAAGACGGTCAAACAGCCTACTACAGGCGAACGGTGCAATA
CCTCCATCACTTCCGCGCCGCCCTCGACCAGGCCAAACGgtaggttcctt
ccctccctcatccccctcctcccttcctccccctccctgcctccctgcct
cccttcctccctacctctcctcgtttttcctttcatttgtcatccatctt
tccctggggttgtacttgccgtctcgcactaagacctccttccttccatc
cctctttccctcgcttgtctttccagCCCCGCGAGCGAATGGAACACTCT
CCTCCGCAGTTTGAAGGAGGGCCCGGGGGAGGGAGGGAGGGAGGGGGGAA
TGAGTTCTGGCGAGGAGTCCAAGAGGCAGGGTTGACACTGTGTGAGGTAA
GTAAGACGAGAGAGGAGGGAGGGAAGGAGGGAGGGCGGGCTTGGTGACTT
GCGGCTGATGCACCTTATTTCCTGTGTTCAGGTGGATGAGGCGGAGGCGC
GGGCTTTCCTTGAGGAGGAAGATGTAAGGAAGGAGGAGGTCGTGGCGGTG
ACAGGGGAGGGGGACGAGGGGGAGCAGCGTGAGGGGGAGGAAGAGGAGGA
GTTGGAGATTGAGTAGGGTGGGGAACAAGGGGAGGAAGGGAAGGAGGGAG
GGAAGGAGGGAGGGAAGGAGGGAGGGAAGGAGGGAGGTCGTGGAGAGTGG
AAGCAATGCAAACACATGTGAACATATACGTATCTATAATCCCAAGAGAG
GGTTAGACGTTACAGTAACGCCAGGACGAGGGCCAGGAGGAAGCGCACAG
TACACAAACGACAAAACGATTCATTCAAACCAAAAGATCAACGATGATGG
CT
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protein sequence of NO03G00620.1

>NO03G00620.1-protein ID=NO03G00620.1-protein|Name=NO03G00620.1|organism=Nannochloropsis oceanica|type=polypeptide|length=182bp
MRSGSGWEKGREGRRGGGGRGCGRRGASADGAGHDATAELPLPHASGRGG
LAGECSASTAATRLSSCGEGGRRSNSLLQANGAIPPSLPRRPRPGQTPRE
RMEHSPPQFEGGPGGGREGGGNEFWRGVQEAGLTLCEVDEAEARAFLEEE
DVRKEEVVAVTGEGDEGEQREGEEEEELEIE*
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protein sequence of NO03G00620.2

>NO03G00620.2-protein ID=NO03G00620.2-protein|Name=NO03G00620.2|organism=Nannochloropsis oceanica|type=polypeptide|length=154bp
MRSGSGWEKGREGRRGGGGRGCGRRGASADGAGHDATAELPLPHASGRGG
LAGECSASTAATRLSSCGEGGRRSNSLLQANGAIPPSLPRRPRPGQTPRE
RMEHSPPQFEGGPGGGREGGGNEFWRGVQEAGLTLCEVSKTREEGGKEGG
RAW*
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Synonyms
Publications