NO03G00500.1, NO03G00500.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G00500.1
Unique NameNO03G00500.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1462
Alignment locationchr3:157450..159387 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:157450..159387 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G00500.1 vs.
Match: EWM25479.1 (hypothetical protein Naga_100207g1 [Nannochloropsis gaditana])

HSP 1 Score: 79.7 bits (195), Expect = 2.100e-11
Identity = 38/67 (56.72%), Postives = 48/67 (71.64%), Query Frame = 0 
Query:    1 MAAGDLITVGAENADNYGVASPVLMGADLFLGSGIQVDLGAPLTKNVGVLLAVLFGIDAFIAPGTAV 68
            + AG L+ VGA N DNYGVAS VL+G + FLG+GI +D+G+P+ KNVGVL A   G DAF+  G  V
Sbjct:  511 VGAGVLVVVGAANVDNYGVASVVLIGGNYFLGAGILIDIGSPMAKNVGVLFAFFLGFDAFVGAGAIV 577
The following BLAST results are available for this feature:
BLAST of NO03G00500.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25479.12.100e-1156.72hypothetical protein Naga_100207g1 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G00500NO03G00500Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G00500.1NO03G00500.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G00500.1.cds1NO03G00500.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G00500.1.cds2NO03G00500.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G00500.1.cds3NO03G00500.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G00500.1 ID=NO03G00500.1|Name=NO03G00500.1|organism=Nannochloropsis oceanica|type=mRNA|length=1462bp
ATGGCAGCCGGAGATCTTATAACTGTCGGGGCGGAGAATGCGGATAATTA
TGGCGTGGCATCCCCGGTGCTGATGGGGGCAGACTTGTTTTTAGGATCGG
GGATTCAGGTGGATTTAGGAGCACCCCTCACCAAGAATGTGGGTGTGCTC
CTCGCTGTCCTCTTTGGTATCGACGCCTTTATAGCCCCGGGAACGGCTGT
GGCAGCAATACCATTAGCGAAGGGACGCCGAACGATTAAAGCTTTGCCGG
GCACTGAGTCACAAACTTTGGATGGTATCTTCGCCACACTAAGTGGCAAC
GCGACGACGTGCAACGCCCGCGGCTTTAAGGGCGACATTACTACGGAATT
TATTGAGGATGCCGCGGGGGCCTGCTCCGACACCCAGAACGAACATCCAG
CGGCGCGCAACTTGAATGACGCCCGCACAGCTTCTGAGGACGGTTCTATG
GCGGCTCCCCCAAATTGGATATCAAGTGCGACCAAACTCTATGACCCATT
AATTGGCAAGACGAATTGGATCGACACCTCAGTGGTGACAAAGCATTTTG
AAGTCCAGTTGTTCGGTGGACTACTCATCGGCACTGGCAATGGTGGAGCC
CACCATGTGTTTTTGACCTTGTTTGGCGAGGTGGCACATGCAGGCGTGCA
CCTTGACGCGGCTGACTTGGGAATGATGAAGGTGCACAGAATCAAGGGAA
CGGATCTCGAAGATTCTGGTAAGCAAATGTTTGAAGTGATGGCTACAGAG
AACGCTGACACAGGCCTTCCTAGGGTACATGTCAATGATGCTGAAATAAC
TGCGAGCAATAAGGAGGAAATCACCTTTGCCTCGACGGTCAACCGCTGGA
TTTTATCCAAAATCTTTGCGGGTGTTGAGGCCCTCTTGGCTCTCGCCAAC
CTTTCTGCAGCCCAGCCCATCGCGATAGCACTTACATCAAAGTGCATCCT
TACCATGTCGAAAAATTCAGTGAGTATCTTGGTATCGTATACGCCTTTAG
GCCGCATCTCGGTCCCCGTTCCTGCCAACACGGCTTCGGGCACCTACTAC
CTCCATGCCACTCAGAACGGTCTCTCCTGGTGCTCTCAGCTCGTGGACTA
CGTTGCTGCGGTGTAAGAATCACAAATGTCAGATTAAAATTTTGTTTTTG
TTCTGTCGTCGCCCATGTCTACCAGCAGTAACAAGGTGTGTTGTCACAGG
AAACTTAACAGGATTGAATCGACAAGTACGAAGAAGTGATGCCGACTTCG
GTGAGTGATAGAGAAATAGTGAGGAAAAGATGAATACGCGGTTTAGGAGG
CAAAATACGGAGTTTGCCTACGGACGCATGCATTTGGTCGACCGAATGCT
ATTGTAGTGCGTGTTTCTGCGAGACTAGCGCTAATATTAATATTAAACTC
GCCCTTTATTCTTACTATGCACTCATCTGTTTGTGACCTTGGCTACAATC
TCACACAAACCA
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protein sequence of NO03G00500.1

>NO03G00500.1-protein ID=NO03G00500.1-protein|Name=NO03G00500.1|organism=Nannochloropsis oceanica|type=polypeptide|length=372bp
MAAGDLITVGAENADNYGVASPVLMGADLFLGSGIQVDLGAPLTKNVGVL
LAVLFGIDAFIAPGTAVAAIPLAKGRRTIKALPGTESQTLDGIFATLSGN
ATTCNARGFKGDITTEFIEDAAGACSDTQNEHPAARNLNDARTASEDGSM
AAPPNWISSATKLYDPLIGKTNWIDTSVVTKHFEVQLFGGLLIGTGNGGA
HHVFLTLFGEVAHAGVHLDAADLGMMKVHRIKGTDLEDSGKQMFEVMATE
NADTGLPRVHVNDAEITASNKEEITFASTVNRWILSKIFAGVEALLALAN
LSAAQPIAIALTSKCILTMSKNSVSILVSYTPLGRISVPVPANTASGTYY
LHATQNGLSWCSQLVDYVAAV*
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mRNA from alignment at chr3:157450..159387+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G00500.1 ID=NO03G00500.1|Name=NO03G00500.1|organism=Nannochloropsis oceanica|type=mRNA|length=1938bp|location=Sequence derived from alignment at chr3:157450..159387+ (Nannochloropsis oceanica)
ATGGCAGCCGGAGATCTTATAACTGTCGGGGCGGAGAATGCGGATAATTA
TGGCGTGGCATCCCCGGTGCTGATGGGGGCAGACTTGTTTTTAGGATCGG
GGATTCAGGTGGATTTAGGAGCACCCCTCACCAAGAATGTGGGTGTGCTC
CTCGCTGTCCTCTTTGGTATCGACGCCTTTATAGCCCCGGGAACGGCTGT
GGTAGGCTATAGCCCATAAAGCATCTATGTTGGAAAGGCTGCTTGGATCA
ATACTGACGCATCCCCTGCATTGAATTTTATTTTGGTCGAGAGGAATGGT
GTGGCTAAGCCGTGGAAGCATTCCGGGTACAAACTCTTGACAGCCACGTC
CAAGACACCTACAACGCGCTTTTTGACGGAAATAACGACAAGGGTGGACG
AGGCAATAGCTGACTCGCACGTCCTTTAAGGCAGCAATACCATTAGCGAA
GGGACGCCGAACGATTAAAGCTTTGCCGGGCACTGAGTCACAAACTTTGG
ATGGTATCTTCGCCACACTAAGTGGCAACGCGACGACGTGCAACGCCCGC
GGCTTTAAGGGCGACATTACTACGGAATTTATTGAGGATGCCGCGGGGGC
CTGCTCCGACACCCAGAACGAACATCCAGCGGCGCGCAACTTGAATGACG
CCCGCACAGCTTCTGAGGACGGTTCTATGGCGGCTCCCCCAAATTGGATA
TCAAGTGCGACCAAACTCTATGACCCATTAATTGGCAAGACGAATTGGAT
CGACACCTCAGTGGTGACAAAGCATTTTGAAGTCCAGTTGTTCGGTGGAC
TACTCATCGGCACTGGCAATGGTGGAGCCCACCGTGTGTTTGGATGCAGC
TCACGTGCTAGACATTCTTTGTGAGTCAATGAGCACAATGGACGAAGGGT
GCGCTCGAGTAAAATTGCATACCAAGGATGAGGCGACATATTCCGAAATT
GAGGCAAACGACAATTGGGCCGAGGCTTTCGTGGATCAACCCACACGGAC
GTTTGGGACTTATCTTAGAATTACACATGATGCCATCTGCACAGCCGCCG
TCACGACCTGACTTGAAGACTTTATCCCAGATGTGTTTTTGACCTTGTTT
GGCGAGGTGGCACATGCAGGCGTGCACCTTGACGCGGCTGACTTGGGAAT
GATGAAGGTGCACAGAATCAAGGGAACGGATCTCGAAGATTCTGGTAAGC
AAATGTTTGAAGTGATGGCTACAGAGAACGCTGACACAGGCCTTCCTAGG
GTACATGTCAATGATGCTGAAATAACTGCGAGCAATAAGGAGGAAATCAC
CTTTGCCTCGACGGTCAACCGCTGGATTTTATCCAAAATCTTTGCGGGTG
TTGAGGCCCTCTTGGCTCTCGCCAACCTTTCTGCAGCCCAGCCCATCGCG
ATAGCACTTACATCAAAGTGCATCCTTACCATGTCGAAAAATTCAGTGAG
TATCTTGGTATCGTATACGCCTTTAGGCCGCATCTCGGTCCCCGTTCCTG
CCAACACGGCTTCGGGCACCTACTACCTCCATGCCACTCAGAACGGTCTC
TCCTGGTGCTCTCAGCTCGTGGACTACGTTGCTGCGGTGTAAGAATCACA
AATGTCAGATTAAAATTTTGTTTTTGTTCTGTCGTCGCCCATGTCTACCA
GCAGTAACAAGGTGTGTTGTCACAGGAAACTTAACAGGATTGAATCGACA
AGTACGAAGAAGTGATGCCGACTTCGGTGAGTGATAGAGAAATAGTGAGG
AAAAGATGAATACGCGGTTTAGGAGGCAAAATACGGAGTTTGCCTACGGA
CGCATGCATTTGGTCGACCGAATGCTATTGTAGTGCGTGTTTCTGCGAGA
CTAGCGCTAATATTAATATTAAACTCGCCCTTTATTCTTACTATGCACTC
ATCTGTTTGTGACCTTGGCTACAATCTCACACAAACCA
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Coding sequence (CDS) from alignment at chr3:157450..159387+

>NO03G00500.1 ID=NO03G00500.1|Name=NO03G00500.1|organism=Nannochloropsis oceanica|type=CDS|length=1116bp|location=Sequence derived from alignment at chr3:157450..159387+ (Nannochloropsis oceanica)
ATGGCAGCCGGAGATCTTATAACTGTCGGGGCGGAGAATGCGGATAATTA
TGGCGTGGCATCCCCGGTGCTGATGGGGGCAGACTTGTTTTTAGGATCGG
GGATTCAGGTGGATTTAGGAGCACCCCTCACCAAGAATGTGGGTGTGCTC
CTCGCTGTCCTCTTTGGTATCGACGCCTTTATAGCCCCGGGAACGGCTGT
GGCAGCAATACCATTAGCGAAGGGACGCCGAACGATTAAAGCTTTGCCGG
GCACTGAGTCACAAACTTTGGATGGTATCTTCGCCACACTAAGTGGCAAC
GCGACGACGTGCAACGCCCGCGGCTTTAAGGGCGACATTACTACGGAATT
TATTGAGGATGCCGCGGGGGCCTGCTCCGACACCCAGAACGAACATCCAG
CGGCGCGCAACTTGAATGACGCCCGCACAGCTTCTGAGGACGGTTCTATG
GCGGCTCCCCCAAATTGGATATCAAGTGCGACCAAACTCTATGACCCATT
AATTGGCAAGACGAATTGGATCGACACCTCAGTGGTGACAAAGCATTTTG
AAGTCCAGTTGTTCGGTGGACTACTCATCGGCACTGGCAATGGTGGAGCC
CACCATGTGTTTTTGACCTTGTTTGGCGAGGTGGCACATGCAGGCGTGCA
CCTTGACGCGGCTGACTTGGGAATGATGAAGGTGCACAGAATCAAGGGAA
CGGATCTCGAAGATTCTGGTAAGCAAATGTTTGAAGTGATGGCTACAGAG
AACGCTGACACAGGCCTTCCTAGGGTACATGTCAATGATGCTGAAATAAC
TGCGAGCAATAAGGAGGAAATCACCTTTGCCTCGACGGTCAACCGCTGGA
TTTTATCCAAAATCTTTGCGGGTGTTGAGGCCCTCTTGGCTCTCGCCAAC
CTTTCTGCAGCCCAGCCCATCGCGATAGCACTTACATCAAAGTGCATCCT
TACCATGTCGAAAAATTCAGTGAGTATCTTGGTATCGTATACGCCTTTAG
GCCGCATCTCGGTCCCCGTTCCTGCCAACACGGCTTCGGGCACCTACTAC
CTCCATGCCACTCAGAACGGTCTCTCCTGGTGCTCTCAGCTCGTGGACTA
CGTTGCTGCGGTGTAA
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Synonyms
Publications