NO03G00410, NO03G00410 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO03G00410 vs. NCBI_GenBank
Match: XP_005855281.1 (violaxanthin de-epoxidase [Nannochloropsis gaditana CCMP526] >EKU21082.1 violaxanthin de-epoxidase [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 454.9 bits (1169), Expect = 2.000e-124 Identity = 211/309 (68.28%), Postives = 244/309 (78.96%), Query Frame = 0 Query: 9 FPLLAAALAIAFQVHAIAPGPKANHLTPFIARGILLAGMEHEMDSVATADL--ALTKTEANTTCIATYCXXXXXXXXXXXXXXXXXXXXXSCDELEDNTPDKIELQKCTADCVVTYENDALDNVNACFDSHDCITLTPIPLTCRDTSMAAPALSNITLMEGKWWATYGKNAVYDCYPCQRLTFSPIDQTVWLYDSKYLTPTLDGGVRAYELQAAFPWPADGMASAIAFNYTYQGMSHGEEWRFLHVDPSVVILYYCGRGNTWNYEGGLVLSRERNSPPEHAAMAREVFGNIGIDFDSEFCTLQPNKPCP 316 F +L A +++ + A A G K N++TP +AR IL+A M HEMD+VA+ADL +L KTEANTTCI TYC +CD LED++PDKIELQKCTADCVVTYEN+ALD VN CFDSHDCI LTPIPL CRDT A P N+T MEG WWAT+GKNAVYDCYPCQRL+FSP++ + WLY SKYLTPTL+GGVRAYELQAAFPWPADGMA+AIAFNYTYQGMSHGEEWRFLHV PS+V+LYYCG+GNTW YEGGLVLSRER+SPP+H ++A E F IGIDF+ EFC LQPN+PCP Sbjct: 8 FFILFAIISVCWTSVADAGGAKVNNVTPSMARTILIAAMSHEMDTVASADLPSSLAKTEANTTCIMTYCTDAALACVKDQACRTALSCLSTCDSLEDDSPDKIELQKCTADCVVTYENEALDAVNGCFDSHDCIALTPIPLACRDTHPAFPIPQNVTDMEGAWWATWGKNAVYDCYPCQRLSFSPLNASSWLYTSKYLTPTLEGGVRAYELQAAFPWPADGMATAIAFNYTYQGMSHGEEWRFLHVAPSLVVLYYCGQGNTWQYEGGLVLSRERSSPPDHVSLAAEAFAKIGIDFEEEFCELQPNRPCP 316
BLAST of NO03G00410 vs. NCBI_GenBank
Match: EWM29505.1 (hypothetical protein Naga_100601g1 [Nannochloropsis gaditana]) HSP 1 Score: 318.9 bits (816), Expect = 1.700e-83 Identity = 156/242 (64.46%), Postives = 180/242 (74.38%), Query Frame = 0 Query: 9 FPLLAAALAIAFQVHAIAPGPKANHLTPFIARGILLAGMEHEMDSVATADL--ALTKTEANTTCIATYCXXXXXXXXXXXXXXXXXXXXXSCDELEDNTPDKIELQKCTADCVVTYENDALDNVNACFDSHDCITLTPIPLTCRDTSMAAPALSNITLMEGKWWATYGKNAVYDCYPCQRLTFSPIDQTVWLYDSKYLTPTLDGGVRAYELQAAFPWPADGMASAIAFNYTYQGMSHGEEWR 249 F +L A +++ + A A G K N++TP +AR IL+A M HEMD+VA+ADL +L KTEANTTCI TYC +CD LED++PDKIELQKCTADCVVTYEN+ALD VN CFDSHDCI LTPIPL CRDT A P N+T MEG WWAT+GKNAVYDCYPCQRL+FSP++ + WLY SKYLTPTL+GGVRAYELQAAFPWPADGMA+AIAFNYTYQG E R Sbjct: 62 FFILFAIISVCWTSVADAGGAKVNNVTPSMARTILIAAMSHEMDTVASADLPSSLAKTEANTTCIMTYCTDAALACVKDQACRTALSCLSTCDSLEDDSPDKIELQKCTADCVVTYENEALDAVNGCFDSHDCIALTPIPLACRDTHPAFPTPQNVTDMEGAWWATWGKNAVYDCYPCQRLSFSPLNASSWLYTSKYLTPTLEGGVRAYELQAAFPWPADGMATAIAFNYTYQGREESEARR 303
BLAST of NO03G00410 vs. NCBI_GenBank
Match: XP_022333299.1 (violaxanthin de-epoxidase, chloroplastic-like [Crassostrea virginica]) HSP 1 Score: 102.4 bits (254), Expect = 2.600e-18 Identity = 65/213 (30.52%), Postives = 95/213 (44.60%), Query Frame = 0 Query: 112 QKCTADCVVTYENDALDNVNACFDS-HDCITLTP--IPLTCRDTSMAAPALSNITLMEGKWWATYGKNAVYDCYPCQRLTFSPIDQTVWLYD--SKYLTPTLDGGVRAYELQAAFPWPADGMASAIAFNYTYQGMSHG--EEWRFLHVDP--SVVILYYCGR-GNTWNYEGGLVLSRERNSPPEHAAMAREVFGNIGIDFDSEFCTLQPNKPC 315 Q C DC+ +YE+D D C + H CIT P P+ C + + I + G W+ G N +YDC+ CQ TF P + +YD K+ T+ GGVR + + G+ +N T M H +WR LHV + ++ YYCG + +EG +V SR + F GID+ S++CT K C Sbjct: 65 QTCLFDCIYSYEDDVFDEFMKCASTDHQCITNDPPNPPVVCHPPQKVESSFT-IDQLTGSWYIVKGLNPIYDCFDCQVTTFKPSVKVDTVYDVFEKFDVKTVKGGVRHRSVNETATQASGGI-----YNLTSMQMGHNTHSQWRILHVGTGNAFLLAYYCGSISADYFFEGSIVYSRTPSLTSNQLVELVAAFKEQGIDY-SKYCTPNNTKNC 270
BLAST of NO03G00410 vs. NCBI_GenBank
Match: EKC40411.1 (Violaxanthin de-epoxidase [Crassostrea gigas]) HSP 1 Score: 86.7 bits (213), Expect = 1.500e-13 Identity = 56/180 (31.11%), Postives = 83/180 (46.11%), Query Frame = 0 Query: 137 HDCITLTP--IPLTCRDTSMAAPALSNITLMEGKWWATYGKNAVYDCYPCQRLTF--SPIDQTVWLYDSKYLTPTLDGGVRAYELQAAFPWPADGMASAIAFNYTYQGMSHG--EEWRFLHVDP--SVVILYYCGR-GNTWNYEGGLVLSRERNSPPEHAAMAREVFGNIGIDFDSEFCT 308 H CIT P P+ C + I L+ G W+ G N +YDC+ CQ TF SP D+TV+ K+ + GG R + + G+ FNYT M H +WR +HV + ++ YYCG + +EG +V SR + + F + GID+ S++CT Sbjct: 8 HQCITNDPPNPPVVCHPPQKVESGFT-IDLLTGSWYIVKGLNRIYDCFDCQVTTFKPSPNDKTVYDVFEKFDVKMVSGGTRHRSVNETVVQASGGI-----FNYTSMQMGHNTHSQWRIMHVGKGGAFLLAYYCGSISADYFFEGSVVYSRTPSLTSDQLVELVAAFKDHGIDY-SKYCT 180
BLAST of NO03G00410 vs. NCBI_GenBank
Match: XP_005853521.1 (violaxanthin de-epoxidase [Nannochloropsis gaditana CCMP526] >EKU22838.1 violaxanthin de-epoxidase [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 69.3 bits (168), Expect = 2.400e-8 Identity = 47/197 (23.86%), Postives = 84/197 (42.64%), Query Frame = 0 Query: 114 CTADCVVTYENDALDNVNAC-FDSHDCIT------LTPIPLTCRDTSMAAPALSNITLMEGKWWATYGKNAVYDCYPCQRLTFSPIDQTVWLYDSKYLTPTLDGGVRAYELQAAFPWPADGMASAIAFNYTYQGMSHGEEWRFLHVDPSVVI-LYYCGRGNTW-NYEGGLVLSRERNSPPEHAAMAREVFGNIGIDF 302 C C +EN+ + NAC C+ P+P A + ++ +GKW+ + G N ++DC+ CQ F+ Q LY T G + + D A +N+ + + + ++W L +P+V I +YY G+ + W Y GG+V +++ + PPE+ F +D+ Sbjct: 198 CQIGCGDLFENEVVGQFNACALSKKQCVPRKEDDGTYPVP-----PDSALVSSFDMNTFKGKWYISAGLNPLFDCFDCQVHFFTV--QGDRLYGKLNWRITEPDG-EFFTRDTVQRFVQDPRAPGKLYNHDNEYLHYQDDWYILDYEPNVFIAVYYRGQNDAWTGYGGGVVYTKQSSVPPEYKKRIAAAFAKANVDY 386
BLAST of NO03G00410 vs. NCBI_GenBank
Match: EWM21133.1 (violaxanthin de-epoxidase [Nannochloropsis gaditana]) HSP 1 Score: 69.3 bits (168), Expect = 2.400e-8 Identity = 47/197 (23.86%), Postives = 84/197 (42.64%), Query Frame = 0 Query: 114 CTADCVVTYENDALDNVNAC-FDSHDCIT------LTPIPLTCRDTSMAAPALSNITLMEGKWWATYGKNAVYDCYPCQRLTFSPIDQTVWLYDSKYLTPTLDGGVRAYELQAAFPWPADGMASAIAFNYTYQGMSHGEEWRFLHVDPSVVI-LYYCGRGNTW-NYEGGLVLSRERNSPPEHAAMAREVFGNIGIDF 302 C C +EN+ + NAC C+ P+P A + ++ +GKW+ + G N ++DC+ CQ F+ Q LY T G + + D A +N+ + + + ++W L +P+V I +YY G+ + W Y GG+V +++ + PPE+ F +D+ Sbjct: 214 CQIGCGDLFENEVVGQFNACALSKKQCVPRKEDDGTYPVP-----PDSALVSSFDMNTFKGKWYISAGLNPLFDCFDCQVHFFTV--QGDRLYGKLNWRITEPDG-EFFTRDTVQRFVQDPRAPGKLYNHDNEYLHYQDDWYILDYEPNVFIAVYYRGQNDAWTGYGGGVVYTKQSSVPPEYKKRIAAAFAKANVDY 402
BLAST of NO03G00410 vs. NCBI_GenBank
Match: XP_006417674.1 (violaxanthin de-epoxidase, chloroplastic [Eutrema salsugineum] >XP_024008247.1 violaxanthin de-epoxidase, chloroplastic [Eutrema salsugineum] >XP_024008248.1 violaxanthin de-epoxidase, chloroplastic [Eutrema salsugineum] >ESQ36027.1 hypothetical protein EUTSA_v10007587mg [Eutrema salsugineum]) HSP 1 Score: 68.6 bits (166), Expect = 4.100e-8 Identity = 57/220 (25.91%), Postives = 92/220 (41.82%), Query Frame = 0 Query: 97 SCDELEDNTPDKIELQKCTADCVVTYENDALDNVNACFDSH-DCITLT------PIPLTCRDTSMAAPALSNITLMEGKWWATYGKNAVYDCYPCQRLTFSPIDQTVWLYDSKYLTPTLDGGVRAYELQAAFPWPADGMASAIAFNYTYQGMSHGEEWRFL-----HVDPSVVILYYCGRGNTWN-YEGGLVLSRERNSPPEHAAMAREVFGNIGIDFDS 304 +C + +N PD+ E C C +EN +D N C S C+ P+P D S+ NI+ GKW+ T G N +D + CQR F D + + + TLD G + A + D AI +N+ + + + ++W L + + +YY GR + W+ Y G +V +R P + +IG DF + Sbjct: 143 ACLQTCNNRPDETE---CQIKCGDLFENKVVDEFNECAVSRKKCVPQKSDLGEFPVP----DPSVLVKNF-NISDFNGKWYITSGLNPTFDTFDCQRHEFH-ADGDKLVGNISWRIKTLDSGF--FTRSAVQKFVQDPNQPAILYNHDNEYLHYQDDWYILSSKVENKPDDYIFVYYRGRNDAWDGYGGAVVYTRSAVLPNSIVPELEKAAKSIGRDFST 351
BLAST of NO03G00410 vs. NCBI_GenBank
Match: XP_011397935.1 (Violaxanthin de-epoxidase, chloroplastic [Auxenochlorella protothecoides] >KFM25047.1 Violaxanthin de-epoxidase, chloroplastic [Auxenochlorella protothecoides]) HSP 1 Score: 66.2 bits (160), Expect = 2.000e-7 Identity = 54/209 (25.84%), Postives = 90/209 (43.06%), Query Frame = 0 Query: 114 CTADCVVTYENDALDNVNAC-FDSHDCITLTPIPLTCRDTSMAAPALS-----NITLMEGKWWATYGKNAVYDCYPCQRLTF-SPIDQTVWLYDSKYLTPT--LDGGVR---------AYELQAAFPWPADGMASAIAFNYTYQGMSHGEEWRFLHVDP-SVVILYYCGRGNTW-NYEGGLVLSRERNSPPEHAAMAREVFGNIGIDFD 303 C C Y+ND +D NAC S C+ P + +DT A PA + + L +G+W+ T G N ++D + CQ F SP + L PT L G +R E + D + +N+ + + + ++W + +P S + Y G+ + W Y G V +R+ + PPE RE+ G+ ++ Sbjct: 44 CQVKCADRYKNDIIDKFNACAITSGGCV---PQKIE-KDTWKAPPASAIDRAFDPELFQGRWYITAGLNPLFDVFDCQEHFFASPSPGKNGGVKAPALLPTGSLYGKIRWRIPKGSSDFIERSTMQRFVQDPGNPGVLYNHDNEYLHYEDDWYVVGWEPDSYAFIVYKGQNDAWKGYGGATVYTRDSSFPPELTNKMRELASQAGLKWE 248
BLAST of NO03G00410 vs. NCBI_GenBank
Match: XP_018826961.1 (PREDICTED: violaxanthin de-epoxidase, chloroplastic [Juglans regia]) HSP 1 Score: 66.2 bits (160), Expect = 2.000e-7 Identity = 53/217 (24.42%), Postives = 91/217 (41.94%), Query Frame = 0 Query: 97 SCDELEDNTPDKIELQKCTADCVVTYENDALDNVNACFDSH-DCITLTPIPLTCRDTSMAAPAL----SNITLMEGKWWATYGKNAVYDCYPCQRLTFSPIDQTVWLYDSKYLTPTLDGGVRAYELQAAFPWPADGMASAIAFNYTYQGMSHGEEWRFL-----HVDPSVVILYYCGRGNTWN-YEGGLVLSRERNSPPEHAAMAREVFGNIGIDFD 303 +C + +N PD+ E C C EN +D N C S C+ P + + PA+ NI+ GKW+ T G N +D + CQ+ F I+ + + + T DGG + A + D I +N+ + + + ++W L + + +YY G+ + W+ Y G +V +R R P ++G DF+ Sbjct: 198 ACLQTCNNRPDETE---CQIKCGDLLENSVVDEFNECAVSRKKCV---PTKSDIGEFPVPDPAVLVKSFNISDFSGKWFITSGLNPTFDTFNCQQHVFH-IESNQLVGNLSWRIQTPDGGF--FTRSAIQRFVQDPNQPGILYNHDNEYLHYQDDWYILSSKIENKQDDYIFVYYRGKNDAWDGYGGAVVYTRNRVLPESIVPELERAAKSVGRDFN 405
BLAST of NO03G00410 vs. NCBI_GenBank
Match: XP_023337015.1 (violaxanthin de-epoxidase, chloroplastic-like isoform X1 [Eurytemora affinis] >XP_023337016.1 violaxanthin de-epoxidase, chloroplastic-like isoform X2 [Eurytemora affinis]) HSP 1 Score: 66.2 bits (160), Expect = 2.000e-7 Identity = 57/229 (24.89%), Postives = 92/229 (40.17%), Query Frame = 0 Query: 103 DNTPDKIELQKCTADCVVT--YENDALDNVNACFDSHDCITLTPIPLTCRDTSM-AAPALSNITLMEGKWWATYGKN-------AVYDCYPCQRLTFSPIDQTVWLYDSKYLTPTLDG-GVRAYELQAAFPWPADGMASAIAFNYTYQGMS-HGEEWRFLHV-DPSVVILYYCGRGNTWNYEGGLVLSRERNS---PPEHAAMAREVFGNIGIDFDSEFCTLQPNKPCP 316 +N + ++ C C +T YEN + C + C+ P C ++ A ++ + +EG WW G N YD YPCQ F + W+ + Y +G A P G+ + + YT + E+WR + + P ++ +CGR +Y GG+V+S+ RN P R V G+D+D + C N CP Sbjct: 77 ENIDREDKVASCAYLCEMTHGYENPQFMAMIECMLDNKCLKQYPDDGPCVGSNKDAITSVKTMEDIEGDWWVLRGVNCGESPYPGGYDWYPCQHERFIKTESGQWINNVTYCGGKHNGCSTDIIVTIANVSMPHPGVVNHV---YTDAPLEPQVEDWRLVSMPSPDYALMLWCGRLPVLDYAGGIVISKHRNDKNMPESVLKEFRRVLKTHGLDWD-KMCP-SDNDHCP 300 The following BLAST results are available for this feature:
BLAST of NO03G00410 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 16
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO03G00410 ID=NO03G00410|Name=NO03G00410|organism=Nannochloropsis oceanica|type=gene|length=1822bpback to top protein sequence of NO03G00410.1 >NO03G00410.1-protein ID=NO03G00410.1-protein|Name=NO03G00410.1|organism=Nannochloropsis oceanica|type=polypeptide|length=318bpback to top Synonyms
Publications
|