NO03G00340, NO03G00340 (gene) Nannochloropsis oceanica

Overview
NameNO03G00340
Unique NameNO03G00340
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1851
Alignment locationchr3:110176..112026 -

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Properties
Property NameValue
DescriptionAnkyrin repeat family protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:110176..112026 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036770Ankyrin_rpt-contain_sf
IPR020683Ankyrin_rpt-contain_dom
IPR002110Ankyrin_rpt
Homology
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BLAST of NO03G00340 vs. NCBI_GenBank
Match: WP_058473021.1 (hypothetical protein [Legionella quateirensis] >KTD53003.1 Ankyrin repeat protein [Legionella quateirensis])

HSP 1 Score: 67.8 bits (164), Expect = 7.500e-8
Identity = 56/192 (29.17%), Postives = 81/192 (42.19%), Query Frame = 0 
Query:    6 NNPFPNSWHPLHFLARSGDISALDTLLHENPDTTRLCNLETACGKTPLMLAAEEGHVAMLNWLLDHGAIIDTAQANTGN-TALFVAIYQRQVAAMQALLARGS--NIAHADRWGATPWITAGMSRDPTMFLALFEYLNKTISREELLESYPLYAAGPKTPVLMYQVQRNDVHMLRMLLRLGANPYSEGSTNE 195
            N P  N W+P+HF A+SG + A+D  +    D    C  E     TPL +A     V +L++LLD    +  +Q  T N   + ++I Q    A   L+  G+  N    D  G TP I A  S D   FL         I +   L  YP++ A              +   L+ LL  G +P  + +TNE
Sbjct:  272 NLPTANGWYPIHFAAQSGAVEAIDWFVKNGVDLQLKCKSE--FDNTPLEIAVLNNQVDVLDYLLDKD--VPISQPGTNNWYPIHLSIRQESYKAFVWLIDNGADINAEQEDEAGETPVICAVYS-DDLSFLRTLALCGAEIDKPNRLGIYPIHMAA-----------YTNTKSLKWLLDKGVSPNRKQATNE 447
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BLAST of NO03G00340 vs. NCBI_GenBank
Match: WP_088703842.1 (ankyrin repeat domain-containing protein [Rhizobium sp. R693] >OWV96828.1 hypothetical protein ATY79_24090 [Rhizobium sp. R693])

HSP 1 Score: 65.9 bits (159), Expect = 2.900e-7
Identity = 46/123 (37.40%), Postives = 65/123 (52.85%), Query Frame = 0 
Query:   15 PLHFLARSGDISALDTLLHENPDTTRLCNLETACGKTPLMLAAEEGHVAMLNWLLDHGAIIDTAQANTGNTALFVAIYQRQVAAMQALLARGSNIAHADRWGATPWITAGMSRDPTMFLALFE 138
            PL   A S  I+ ++ L+ ++ +         + G T L  AA  G V +   LLDHGAI+D A    G T L VA  Q QVA  + LLA+G++I HA+  G TP IT  + +  T  + LF+
Sbjct:   55 PLINAALSNQIAIVELLIGKHANVM----ARNSGGFTALHAAAYSGSVPISKLLLDHGAILDDASNKAGATPLMVAGEQNQVALAEFLLAKGADIGHAEVHGYTP-ITRAIWKGNTDIVRLFK 172
The following BLAST results are available for this feature:
BLAST of NO03G00340 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
WP_058473021.17.500e-829.17hypothetical protein [Legionella quateirensis] >KT... [more]
WP_088703842.12.900e-737.40ankyrin repeat domain-containing protein [Rhizobiu... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL065nonsL065Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR084ncniR084Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR050ngnoR050Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G00340.1NO03G00340.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|663604gene_10327Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G00340.1NO03G00340.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G00340 ID=NO03G00340|Name=NO03G00340|organism=Nannochloropsis oceanica|type=gene|length=1851bp
TGACGTGATTGATGATGCTGACAGGGCGCGAACGGATGTCACTCGAAGGC
CGTGATCGTGATCCTGTGCCTCATCACAGGCAGACCATGTCTAGTGGGCC
TTTGCTTTGCTATTGAGCCTGCGAAGGGGAACCTAATTTTATGTCCTGTT
CCTTCACGATCTCTTCGTCGCCATCCTGTCCCGGTGTGGCCGCTAAATTA
ATCGGCATGGTCACACAACGATAGCAGTTAGGAACGTAAGCTTGGTCCAG
CACGCCTCGAGTCCGAACCAGCGTTGTATGCTTGTGGTTTACTGCATGTT
GGCATGAAGCCATTTACTTTATATGTATCCATACCGTCATGATCTAATCT
TTATCTGCCTCACTCCCTTTTCACTTTGTTTCCCCTTCTCTCCCTATTCT
TCACACTGTAAAAATGCATAACCCTGGCAGCGAGTGAGCCCGTACACGAG
GTGGCTCACCGCGTGTGTCATGGAGCCCATCGACAACAATCCATTTCCCA
ACTCATGGCACCCACTTCACTTTCTTGCCCGGTCCGGCGACATCTCCGCC
TTGGACACCCTCTTACATGAGAACCCCGACACGACGCGCCTCTGCAATCT
CGAGACTGCCTGTGGCAAGACTCCTCTAATGCTTGCCGCCGAGGAAGGGC
ACGTCGCTATGCTGAATTGGCTGCTCGACCATGGCGCCATCATCGATACC
GCCCAGGCCAATACTGGAAACACCGCTTTGTTCGTTGCCATATATCAACG
CCAAGTTGCTGCGATGCAGGCTCTGCTGGCGCGGGGAAGCAATATTGCCC
ACGCAGATCGGTGGGGCGCCACACCCTGGATCACGGCAGGCATGTCCAGG
GACCCAACCATGTTTCTTGCTCTGTTTGAGTACCTGAATAAAACAATTTC
TCGGGAAGAATTGTTAGAAAGCTATCCCCTCTACGCCGCGGGACCGAAGA
CCCCTGTCCTCATGTACCAAGTGCAACGCAACGATGTACATATGCTTCGA
ATGCTCTTGCGCCTCGGTGCCAATCCATACAGTGAGGGCAGCACAAACGA
GGCTATAAAATTAGCGACAGCAGCAGCAGCTAGGGGAGAGAGGGGGGGAA
AAGAGTGTTTGTTTTTGTTGGAGGAGTGGGAGCGAGCCTACGTCCTGGCC
AAGGTCCGGGCGACGGCGGACGCGGCGGGGGAGGCGAGGGCGGGCGGGAA
GGAGAGACCGCGGCAGCTTTCAGCGTGGTTTAAGGAAGAGATGGATGTCA
CCGTACATGGGCAGTATGGGGAGGAGACGGAGGAAGAGGTAAGGATGGGG
TGTGTGACGCGGTGGGTTGTGAAGGTGATGGCAGACGATTTATTTCGGAC
ATTGACTGAGTATATTGGGGAGAGGACGACGGGATTACCATTAGAGGTGG
AGGAAATAAACCAAGAGGAGCTTGATTGTTTATGTGTTGATGAAGACGAC
GGGGAGGAGGCTTTTGAAGACGGGGAGGAGGCGTTTGACTGGTGACACAG
CGTGAGATTGACGGCATATATGTCAAGTAAGGAAACTTATTTTCGCGCGC
AATTGTGCCATTGTTCCGAAAGAGGCCTTCCACAGGGGCCCGAATTAAAG
TTTTGTGGTTGAGCCCACGACTTCTCATGGGCATTGGAAAAGTGTGTAGC
AAACAATATGACTACGCGGATCATCAATAATCATTGACCATGAAACTGGA
TGTAATTAAAGGGACTACAGTGAGATAGACAAGATCGCCGACTTGACGAT
TCCCCACCTGTTCTCGTGAGCTTGGTCACGATGGTTATGTACAGTCGCTA
CCAAAGGGGCGCCTGCCACATGGGAAGACTAAAACTCACTTTGAAACCAC
C
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protein sequence of NO03G00340.1

>NO03G00340.1-protein ID=NO03G00340.1-protein|Name=NO03G00340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=342bp
MEPIDNNPFPNSWHPLHFLARSGDISALDTLLHENPDTTRLCNLETACGK
TPLMLAAEEGHVAMLNWLLDHGAIIDTAQANTGNTALFVAIYQRQVAAMQ
ALLARGSNIAHADRWGATPWITAGMSRDPTMFLALFEYLNKTISREELLE
SYPLYAAGPKTPVLMYQVQRNDVHMLRMLLRLGANPYSEGSTNEAIKLAT
AAAARGERGGKECLFLLEEWERAYVLAKVRATADAAGEARAGGKERPRQL
SAWFKEEMDVTVHGQYGEETEEEVRMGCVTRWVVKVMADDLFRTLTEYIG
ERTTGLPLEVEEINQEELDCLCVDEDDGEEAFEDGEEAFDW*
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Synonyms
Publications