NO03G00260.1, NO03G00260.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G00260.1
Unique NameNO03G00260.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1832
Alignment locationchr3:77327..79158 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:77327..79158 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G00260.1 vs.
Match: EWM29566.1 (hypothetical protein Naga_100006g9 [Nannochloropsis gaditana])

HSP 1 Score: 154.1 bits (388), Expect = 1.400e-33
Identity = 102/205 (49.76%), Postives = 122/205 (59.51%), Query Frame = 0 
Query:    1 MTTSEEISLGYYRISCALLHRWQFANHNNRSEINEACLQSGASYEELRSILKYLRAHYVTDFLRSCSLGQVTGDLFAYYTTLKQQRRRRAQPKKDRP---MDPLFAPSSES------STGSSGISGGGGS-------ISQWLQESSSVLPSPQHYHRESSTHTHYNHHHSRLHTPSSFSQEPP-----ALLAQPSISSTSSSCIP 185
            MTTSEEISL YYRI CALLHRW F  HNNR++I+EAC +SGASYEELRSILKYLRAHYV  FL +  LGQV+ DLFAYY +LKQQRRRR   KKD     +D  F P S S      ST S   +G   S       +S+WLQ   S          ++   + +N  H R +   SFSQ PP      L + P  +ST+ S +P
Sbjct:   30 MTTSEEISLEYYRICCALLHRWYFVAHNNRNDISEACSKSGASYEELRSILKYLRAHYVGGFLTARKLGQVSDDLFAYYLSLKQQRRRRTATKKDHTNGGVDLSFTPLSTSSSRPIKSTASVHETGNAESKRSKNNAVSRWLQAPLST---------DNQKASSFNCDHERPYHSLSFSQRPPFRLVHRLHSSPRATSTNKSSVP 225
The following BLAST results are available for this feature:
BLAST of NO03G00260.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29566.11.400e-3349.76hypothetical protein Naga_100006g9 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G00260NO03G00260Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G00260.1NO03G00260.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G00260.1.cds1NO03G00260.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G00260.1 ID=NO03G00260.1|Name=NO03G00260.1|organism=Nannochloropsis oceanica|type=mRNA|length=1832bp
ACAGGGTCCGATCTCCCCACCGGCACCGTGTCCCTTTTACTCCAATCGCC
CATTTACTGCGGCCTCTCTCTGGCATCATGACGACGAGCGAAGAGATATC
TCTTGGGTACTATCGGATTTCCTGTGCATTGCTTCATCGCTGGCAGTTTG
CCAACCACAACAACCGCAGTGAGATCAACGAGGCCTGCCTCCAGAGCGGG
GCCTCGTATGAGGAGTTGCGGTCCATCCTCAAGTATCTGCGGGCGCATTA
TGTCACCGATTTCTTGAGATCTTGCAGTCTAGGACAAGTCACGGGTGATC
TCTTTGCCTACTATACCACTCTCAAGCAACAACGCCGCCGTCGGGCACAG
CCAAAGAAAGACCGGCCAATGGACCCCCTTTTCGCCCCTTCCTCGGAAAG
CAGCACCGGCAGCAGCGGAATCAGTGGCGGTGGTGGATCTATCAGTCAGT
GGCTTCAAGAGTCCTCCTCTGTCCTTCCCTCCCCCCAGCACTACCACCGC
GAGAGTAGCACCCACACCCATTATAACCACCATCACAGCCGCCTGCACAC
TCCGTCCTCCTTCTCCCAGGAGCCGCCCGCCCTCCTTGCCCAGCCCTCAA
TCTCTTCTACTTCCTCTTCCTGCATCCCACCAACTGGCGCAGGGGACATG
CTTACCGGCAGTTTCGCTCCTCCCTACGCGGTAATTTCCTCCTCCACCCC
CCAAGTCGTTCAATATCAGAGGCCGGTCTCCCTCCTTCTTGACGGCGACA
ATCCCCGTCCTCTCGCCTTTCATCCAGCAGCAGCAGCAGCTGCAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGTGGAAGAGGAGGAGGAGG
AGGAGGAGGAGTAGAAGGAGGAGGACGCGCTCCGCAGCATTTTCAACCTC
TCACTCTGTCCCGCATTCGCAACCAAAACCACTACCACCAGCAACAGCAA
CAGCAACATGAGCAGCAGCAGCGCCAGCACCAGCATCAGCACCAGCATCA
GCACCAGCACCAACAGCACCAGCAGCACCAACACCAGCAGCACAAGCACC
AGCACCAGCAGGAGCTTCACAGCCGACAGCACGATTCTACGGCCATGAGC
AATGTCCACCACATGGGCCCCATCGTGTCTGGGGCCGCTGCTGTCGCGTC
TGTCAACATAAGCAGCATTAGCAATGATGCCTTTCTCCATCGCAGCGCCA
ACCTCGGCACGGGTTTGAAGAGCAGCCCTGCAAATAATTTTGTCAGGAGC
AGCAGCAGCAGCAACAACAACAATAACAACAGCAGCAGCAGCAGCAACAG
CAGCAGCAGAAACAACAGCAACAAGAAGAATTGCAGCAGCAGTAGCAGCA
GCAGACGCTGCAGCGGGAGGCTCTCTACCGTTGCTAATATCCTCAGCAGC
GCCCACACTACAGGCACCAGTAGCAGCATGAAGAACAGCATTAATAGCGG
TGGCAGCAACAAAATGTGCAACGTCACCGATGGTAATCTTGTCAAGTTCC
CTCCTGCCCCCGGGCCTGTAATTGCCGAAGGCTCGGACGAGGACAAAGGC
TCAAGCACGAGTAGCGGTAATATCGGGCGGCAGTACATACAAGAGGAAGA
TGAGGAGGAAGACGAGGGGGAAGAGGAAGAGGAGGATGAAGAAGAAGAAA
AGGAAGAGGTGAAGGACGGGGAAGAGGAGGAGAAGGAAGAAGAGAAGGAG
GAAAAGAAGAAGCGTCAACAAGAGATTGACGACGCTCGTTTGCCTTTGAA
GAAGCGCCAGTGCCATGTGGACATGAAGTGCGACCGTTTAGTGGCAGCAT
CCATGCTGTTGGGCCTGAAGATGCAGGGTTAA
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protein sequence of NO03G00260.1

>NO03G00260.1-protein ID=NO03G00260.1-protein|Name=NO03G00260.1|organism=Nannochloropsis oceanica|type=polypeptide|length=585bp
MTTSEEISLGYYRISCALLHRWQFANHNNRSEINEACLQSGASYEELRSI
LKYLRAHYVTDFLRSCSLGQVTGDLFAYYTTLKQQRRRRAQPKKDRPMDP
LFAPSSESSTGSSGISGGGGSISQWLQESSSVLPSPQHYHRESSTHTHYN
HHHSRLHTPSSFSQEPPALLAQPSISSTSSSCIPPTGAGDMLTGSFAPPY
AVISSSTPQVVQYQRPVSLLLDGDNPRPLAFHPAAAAAAGGGGGGGGGGG
GGGRGGGGGGGVEGGGRAPQHFQPLTLSRIRNQNHYHQQQQQQHEQQQRQ
HQHQHQHQHQHQQHQQHQHQQHKHQHQQELHSRQHDSTAMSNVHHMGPIV
SGAAAVASVNISSISNDAFLHRSANLGTGLKSSPANNFVRSSSSSNNNNN
NSSSSSNSSSRNNSNKKNCSSSSSSRRCSGRLSTVANILSSAHTTGTSSS
MKNSINSGGSNKMCNVTDGNLVKFPPAPGPVIAEGSDEDKGSSTSSGNIG
RQYIQEEDEEEDEGEEEEEDEEEEKEEVKDGEEEEKEEEKEEKKKRQQEI
DDARLPLKKRQCHVDMKCDRLVAASMLLGLKMQG*
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mRNA from alignment at chr3:77327..79158-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G00260.1 ID=NO03G00260.1|Name=NO03G00260.1|organism=Nannochloropsis oceanica|type=mRNA|length=1832bp|location=Sequence derived from alignment at chr3:77327..79158- (Nannochloropsis oceanica)
ACAGGGTCCGATCTCCCCACCGGCACCGTGTCCCTTTTACTCCAATCGCC
CATTTACTGCGGCCTCTCTCTGGCATCATGACGACGAGCGAAGAGATATC
TCTTGGGTACTATCGGATTTCCTGTGCATTGCTTCATCGCTGGCAGTTTG
CCAACCACAACAACCGCAGTGAGATCAACGAGGCCTGCCTCCAGAGCGGG
GCCTCGTATGAGGAGTTGCGGTCCATCCTCAAGTATCTGCGGGCGCATTA
TGTCACCGATTTCTTGAGATCTTGCAGTCTAGGACAAGTCACGGGTGATC
TCTTTGCCTACTATACCACTCTCAAGCAACAACGCCGCCGTCGGGCACAG
CCAAAGAAAGACCGGCCAATGGACCCCCTTTTCGCCCCTTCCTCGGAAAG
CAGCACCGGCAGCAGCGGAATCAGTGGCGGTGGTGGATCTATCAGTCAGT
GGCTTCAAGAGTCCTCCTCTGTCCTTCCCTCCCCCCAGCACTACCACCGC
GAGAGTAGCACCCACACCCATTATAACCACCATCACAGCCGCCTGCACAC
TCCGTCCTCCTTCTCCCAGGAGCCGCCCGCCCTCCTTGCCCAGCCCTCAA
TCTCTTCTACTTCCTCTTCCTGCATCCCACCAACTGGCGCAGGGGACATG
CTTACCGGCAGTTTCGCTCCTCCCTACGCGGTAATTTCCTCCTCCACCCC
CCAAGTCGTTCAATATCAGAGGCCGGTCTCCCTCCTTCTTGACGGCGACA
ATCCCCGTCCTCTCGCCTTTCATCCAGCAGCAGCAGCAGCTGCAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGTGGAAGAGGAGGAGGAGG
AGGAGGAGGAGTAGAAGGAGGAGGACGCGCTCCGCAGCATTTTCAACCTC
TCACTCTGTCCCGCATTCGCAACCAAAACCACTACCACCAGCAACAGCAA
CAGCAACATGAGCAGCAGCAGCGCCAGCACCAGCATCAGCACCAGCATCA
GCACCAGCACCAACAGCACCAGCAGCACCAACACCAGCAGCACAAGCACC
AGCACCAGCAGGAGCTTCACAGCCGACAGCACGATTCTACGGCCATGAGC
AATGTCCACCACATGGGCCCCATCGTGTCTGGGGCCGCTGCTGTCGCGTC
TGTCAACATAAGCAGCATTAGCAATGATGCCTTTCTCCATCGCAGCGCCA
ACCTCGGCACGGGTTTGAAGAGCAGCCCTGCAAATAATTTTGTCAGGAGC
AGCAGCAGCAGCAACAACAACAATAACAACAGCAGCAGCAGCAGCAACAG
CAGCAGCAGAAACAACAGCAACAAGAAGAATTGCAGCAGCAGTAGCAGCA
GCAGACGCTGCAGCGGGAGGCTCTCTACCGTTGCTAATATCCTCAGCAGC
GCCCACACTACAGGCACCAGTAGCAGCATGAAGAACAGCATTAATAGCGG
TGGCAGCAACAAAATGTGCAACGTCACCGATGGTAATCTTGTCAAGTTCC
CTCCTGCCCCCGGGCCTGTAATTGCCGAAGGCTCGGACGAGGACAAAGGC
TCAAGCACGAGTAGCGGTAATATCGGGCGGCAGTACATACAAGAGGAAGA
TGAGGAGGAAGACGAGGGGGAAGAGGAAGAGGAGGATGAAGAAGAAGAAA
AGGAAGAGGTGAAGGACGGGGAAGAGGAGGAGAAGGAAGAAGAGAAGGAG
GAAAAGAAGAAGCGTCAACAAGAGATTGACGACGCTCGTTTGCCTTTGAA
GAAGCGCCAGTGCCATGTGGACATGAAGTGCGACCGTTTAGTGGCAGCAT
CCATGCTGTTGGGCCTGAAGATGCAGGGTTAA
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Coding sequence (CDS) from alignment at chr3:77327..79158-

>NO03G00260.1 ID=NO03G00260.1|Name=NO03G00260.1|organism=Nannochloropsis oceanica|type=CDS|length=1755bp|location=Sequence derived from alignment at chr3:77327..79158- (Nannochloropsis oceanica)
ATGACGACGAGCGAAGAGATATCTCTTGGGTACTATCGGATTTCCTGTGC
ATTGCTTCATCGCTGGCAGTTTGCCAACCACAACAACCGCAGTGAGATCA
ACGAGGCCTGCCTCCAGAGCGGGGCCTCGTATGAGGAGTTGCGGTCCATC
CTCAAGTATCTGCGGGCGCATTATGTCACCGATTTCTTGAGATCTTGCAG
TCTAGGACAAGTCACGGGTGATCTCTTTGCCTACTATACCACTCTCAAGC
AACAACGCCGCCGTCGGGCACAGCCAAAGAAAGACCGGCCAATGGACCCC
CTTTTCGCCCCTTCCTCGGAAAGCAGCACCGGCAGCAGCGGAATCAGTGG
CGGTGGTGGATCTATCAGTCAGTGGCTTCAAGAGTCCTCCTCTGTCCTTC
CCTCCCCCCAGCACTACCACCGCGAGAGTAGCACCCACACCCATTATAAC
CACCATCACAGCCGCCTGCACACTCCGTCCTCCTTCTCCCAGGAGCCGCC
CGCCCTCCTTGCCCAGCCCTCAATCTCTTCTACTTCCTCTTCCTGCATCC
CACCAACTGGCGCAGGGGACATGCTTACCGGCAGTTTCGCTCCTCCCTAC
GCGGTAATTTCCTCCTCCACCCCCCAAGTCGTTCAATATCAGAGGCCGGT
CTCCCTCCTTCTTGACGGCGACAATCCCCGTCCTCTCGCCTTTCATCCAG
CAGCAGCAGCAGCTGCAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGTGGAAGAGGAGGAGGAGGAGGAGGAGGAGTAGAAGGAGGAGGACG
CGCTCCGCAGCATTTTCAACCTCTCACTCTGTCCCGCATTCGCAACCAAA
ACCACTACCACCAGCAACAGCAACAGCAACATGAGCAGCAGCAGCGCCAG
CACCAGCATCAGCACCAGCATCAGCACCAGCACCAACAGCACCAGCAGCA
CCAACACCAGCAGCACAAGCACCAGCACCAGCAGGAGCTTCACAGCCGAC
AGCACGATTCTACGGCCATGAGCAATGTCCACCACATGGGCCCCATCGTG
TCTGGGGCCGCTGCTGTCGCGTCTGTCAACATAAGCAGCATTAGCAATGA
TGCCTTTCTCCATCGCAGCGCCAACCTCGGCACGGGTTTGAAGAGCAGCC
CTGCAAATAATTTTGTCAGGAGCAGCAGCAGCAGCAACAACAACAATAAC
AACAGCAGCAGCAGCAGCAACAGCAGCAGCAGAAACAACAGCAACAAGAA
GAATTGCAGCAGCAGTAGCAGCAGCAGACGCTGCAGCGGGAGGCTCTCTA
CCGTTGCTAATATCCTCAGCAGCGCCCACACTACAGGCACCAGTAGCAGC
ATGAAGAACAGCATTAATAGCGGTGGCAGCAACAAAATGTGCAACGTCAC
CGATGGTAATCTTGTCAAGTTCCCTCCTGCCCCCGGGCCTGTAATTGCCG
AAGGCTCGGACGAGGACAAAGGCTCAAGCACGAGTAGCGGTAATATCGGG
CGGCAGTACATACAAGAGGAAGATGAGGAGGAAGACGAGGGGGAAGAGGA
AGAGGAGGATGAAGAAGAAGAAAAGGAAGAGGTGAAGGACGGGGAAGAGG
AGGAGAAGGAAGAAGAGAAGGAGGAAAAGAAGAAGCGTCAACAAGAGATT
GACGACGCTCGTTTGCCTTTGAAGAAGCGCCAGTGCCATGTGGACATGAA
GTGCGACCGTTTAGTGGCAGCATCCATGCTGTTGGGCCTGAAGATGCAGG
GTTAA
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Synonyms
Publications