NO03G00260, NO03G00260 (gene) Nannochloropsis oceanica

Overview
NameNO03G00260
Unique NameNO03G00260
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1832
Alignment locationchr3:77327..79158 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:77327..79158 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO03G00260 vs. NCBI_GenBank
Match: EWM29566.1 (hypothetical protein Naga_100006g9 [Nannochloropsis gaditana])

HSP 1 Score: 127.1 bits (318), Expect = 1.800e-25
Identity = 61/79 (77.22%), Postives = 67/79 (84.81%), Query Frame = 0 
Query:    1 MTTSEEISLGYYRISCALLHRWQFANHNNRSEINEACLQSGASYEELRSILKYLRAHYVTDFLRSCSLGQVTGDLFAYY 80
            MTTSEEISL YYRI CALLHRW F  HNNR++I+EAC +SGASYEELRSILKYLRAHYV  FL +  LGQV+ DLFAYY
Sbjct:   30 MTTSEEISLEYYRICCALLHRWYFVAHNNRNDISEACSKSGASYEELRSILKYLRAHYVGGFLTARKLGQVSDDLFAYY 108
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BLAST of NO03G00260 vs. NCBI_GenBank
Match: EWM29614.1 (hypothetical protein Naga_100006g7 [Nannochloropsis gaditana])

HSP 1 Score: 95.9 bits (237), Expect = 4.400e-16
Identity = 41/79 (51.90%), Postives = 57/79 (72.15%), Query Frame = 0 
Query:    1 MTTSEEISLGYYRISCALLHRWQFANHNNRSEINEACLQSGASYEELRSILKYLRAHYVTDFLRSCSLGQVTGDLFAYY 80
            MT SEE+SL YY + C LL RW+++  NNR ++N+AC++SGASY+ELRSILK+LRA Y+  F  +   G+   D + YY
Sbjct:    1 MTASEELSLRYYEVCCMLLQRWRYSTQNNREDMNDACIESGASYDELRSILKHLRAKYMAGFNNAQKQGRFIDDFYGYY 79
The following BLAST results are available for this feature:
BLAST of NO03G00260 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM29566.11.800e-2577.22hypothetical protein Naga_100006g9 [Nannochloropsi... [more]
EWM29614.14.400e-1651.90hypothetical protein Naga_100006g7 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL065nonsL065Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR084ncniR084Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR050ngnoR050Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005851NSK005851Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G00260.1NO03G00260.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100006g9gene1115Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G00260.1NO03G00260.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G00260 ID=NO03G00260|Name=NO03G00260|organism=Nannochloropsis oceanica|type=gene|length=1832bp
ACAGGGTCCGATCTCCCCACCGGCACCGTGTCCCTTTTACTCCAATCGCC
CATTTACTGCGGCCTCTCTCTGGCATCATGACGACGAGCGAAGAGATATC
TCTTGGGTACTATCGGATTTCCTGTGCATTGCTTCATCGCTGGCAGTTTG
CCAACCACAACAACCGCAGTGAGATCAACGAGGCCTGCCTCCAGAGCGGG
GCCTCGTATGAGGAGTTGCGGTCCATCCTCAAGTATCTGCGGGCGCATTA
TGTCACCGATTTCTTGAGATCTTGCAGTCTAGGACAAGTCACGGGTGATC
TCTTTGCCTACTATACCACTCTCAAGCAACAACGCCGCCGTCGGGCACAG
CCAAAGAAAGACCGGCCAATGGACCCCCTTTTCGCCCCTTCCTCGGAAAG
CAGCACCGGCAGCAGCGGAATCAGTGGCGGTGGTGGATCTATCAGTCAGT
GGCTTCAAGAGTCCTCCTCTGTCCTTCCCTCCCCCCAGCACTACCACCGC
GAGAGTAGCACCCACACCCATTATAACCACCATCACAGCCGCCTGCACAC
TCCGTCCTCCTTCTCCCAGGAGCCGCCCGCCCTCCTTGCCCAGCCCTCAA
TCTCTTCTACTTCCTCTTCCTGCATCCCACCAACTGGCGCAGGGGACATG
CTTACCGGCAGTTTCGCTCCTCCCTACGCGGTAATTTCCTCCTCCACCCC
CCAAGTCGTTCAATATCAGAGGCCGGTCTCCCTCCTTCTTGACGGCGACA
ATCCCCGTCCTCTCGCCTTTCATCCAGCAGCAGCAGCAGCTGCAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGTGGAAGAGGAGGAGGAGG
AGGAGGAGGAGTAGAAGGAGGAGGACGCGCTCCGCAGCATTTTCAACCTC
TCACTCTGTCCCGCATTCGCAACCAAAACCACTACCACCAGCAACAGCAA
CAGCAACATGAGCAGCAGCAGCGCCAGCACCAGCATCAGCACCAGCATCA
GCACCAGCACCAACAGCACCAGCAGCACCAACACCAGCAGCACAAGCACC
AGCACCAGCAGGAGCTTCACAGCCGACAGCACGATTCTACGGCCATGAGC
AATGTCCACCACATGGGCCCCATCGTGTCTGGGGCCGCTGCTGTCGCGTC
TGTCAACATAAGCAGCATTAGCAATGATGCCTTTCTCCATCGCAGCGCCA
ACCTCGGCACGGGTTTGAAGAGCAGCCCTGCAAATAATTTTGTCAGGAGC
AGCAGCAGCAGCAACAACAACAATAACAACAGCAGCAGCAGCAGCAACAG
CAGCAGCAGAAACAACAGCAACAAGAAGAATTGCAGCAGCAGTAGCAGCA
GCAGACGCTGCAGCGGGAGGCTCTCTACCGTTGCTAATATCCTCAGCAGC
GCCCACACTACAGGCACCAGTAGCAGCATGAAGAACAGCATTAATAGCGG
TGGCAGCAACAAAATGTGCAACGTCACCGATGGTAATCTTGTCAAGTTCC
CTCCTGCCCCCGGGCCTGTAATTGCCGAAGGCTCGGACGAGGACAAAGGC
TCAAGCACGAGTAGCGGTAATATCGGGCGGCAGTACATACAAGAGGAAGA
TGAGGAGGAAGACGAGGGGGAAGAGGAAGAGGAGGATGAAGAAGAAGAAA
AGGAAGAGGTGAAGGACGGGGAAGAGGAGGAGAAGGAAGAAGAGAAGGAG
GAAAAGAAGAAGCGTCAACAAGAGATTGACGACGCTCGTTTGCCTTTGAA
GAAGCGCCAGTGCCATGTGGACATGAAGTGCGACCGTTTAGTGGCAGCAT
CCATGCTGTTGGGCCTGAAGATGCAGGGTTAA
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protein sequence of NO03G00260.1

>NO03G00260.1-protein ID=NO03G00260.1-protein|Name=NO03G00260.1|organism=Nannochloropsis oceanica|type=polypeptide|length=585bp
MTTSEEISLGYYRISCALLHRWQFANHNNRSEINEACLQSGASYEELRSI
LKYLRAHYVTDFLRSCSLGQVTGDLFAYYTTLKQQRRRRAQPKKDRPMDP
LFAPSSESSTGSSGISGGGGSISQWLQESSSVLPSPQHYHRESSTHTHYN
HHHSRLHTPSSFSQEPPALLAQPSISSTSSSCIPPTGAGDMLTGSFAPPY
AVISSSTPQVVQYQRPVSLLLDGDNPRPLAFHPAAAAAAGGGGGGGGGGG
GGGRGGGGGGGVEGGGRAPQHFQPLTLSRIRNQNHYHQQQQQQHEQQQRQ
HQHQHQHQHQHQQHQQHQHQQHKHQHQQELHSRQHDSTAMSNVHHMGPIV
SGAAAVASVNISSISNDAFLHRSANLGTGLKSSPANNFVRSSSSSNNNNN
NSSSSSNSSSRNNSNKKNCSSSSSSRRCSGRLSTVANILSSAHTTGTSSS
MKNSINSGGSNKMCNVTDGNLVKFPPAPGPVIAEGSDEDKGSSTSSGNIG
RQYIQEEDEEEDEGEEEEEDEEEEKEEVKDGEEEEKEEEKEEKKKRQQEI
DDARLPLKKRQCHVDMKCDRLVAASMLLGLKMQG*
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Synonyms
Publications