NO03G00040.1, NO03G00040.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G00040.1
Unique NameNO03G00040.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length207
Alignment locationchr3:11237..11653 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:11237..11653 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO03G00040.1 vs.
Match: XP_005853637.1 (hypothetical protein NGA_0499201, partial [Nannochloropsis gaditana CCMP526]; EKU22724.1 hypothetical protein NGA_0499201, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 65.5 bits (158), Expect = 7.500e-8
Identity = 26/31 (83.87%), Postives = 28/31 (90.32%), Query Frame = 0
Query:    1 MPPPWKQVVPVIALFGLYGAWVLRDRFDHHI 32
            MPPPWKQVVPV+ +F LYGAWVLRDRF HHI
Sbjct:    1 MPPPWKQVVPVVGVFALYGAWVLRDRFHHHI 31          
The following BLAST results are available for this feature:
BLAST of NO03G00040.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853637.17.500e-883.87hypothetical protein NGA_0499201, partial [Nannoch... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G00040NO03G00040Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G00040.1NO03G00040.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G00040.1.cds1NO03G00040.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G00040.1.cds2NO03G00040.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G00040.1 ID=NO03G00040.1|Name=NO03G00040.1|organism=Nannochloropsis oceanica|type=mRNA|length=207bp
ATGCCACCGCCGTGGAAGCAAGTAGTGCCCGTCATCGCCTTGTTTGGCTT
GTACGGGGCATGGGTGTTGCGGGACAGGTTTGACCACCATATTGTCATGC
GAGAAGAGATCAAGGAGGACAGGCGGCGGCAAAAACGAGAGGCGAGACTA
GAAACTGCGAGAAGAGGGGCGGAAGCAGCAGCAACTGAAGAAATTAACAA
AGAATAA
back to top

protein sequence of NO03G00040.1

>NO03G00040.1-protein ID=NO03G00040.1-protein|Name=NO03G00040.1|organism=Nannochloropsis oceanica|type=polypeptide|length=69bp
MPPPWKQVVPVIALFGLYGAWVLRDRFDHHIVMREEIKEDRRRQKREARL
ETARRGAEAAATEEINKE*
back to top

mRNA from alignment at chr3:11237..11653+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G00040.1 ID=NO03G00040.1|Name=NO03G00040.1|organism=Nannochloropsis oceanica|type=mRNA|length=417bp|location=Sequence derived from alignment at chr3:11237..11653+ (Nannochloropsis oceanica)
ATGCCACCGCCGTGGAAGCAAGTAGTGCCCGTCATCGCCTTGTTTGGCTT GTACGGGGCATGGGTGTTGCGGGACAGGTCAGTGAAAAAGGAGGGGATTC ATTAACGTACTGCTTTCAATAATTTGTATCCTGGAGGAATGGCGATTGGA GGGCGGGAATAAGGAGAGAGTGTAAGAGATGGGGAATTCGGAACCATTAT GGCAGACGTCGGAGAAGAGGGAGACGCGAGCGCCAAACATCTTAGCATCA TCGACACATCTCTCTCCATTGTTGCCTCCATCTACAGGTTTGACCACCAT ATTGTCATGCGAGAAGAGATCAAGGAGGACAGGCGGCGGCAAAAACGAGA GGCGAGACTAGAAACTGCGAGAAGAGGGGCGGAAGCAGCAGCAACTGAAG AAATTAACAAAGAATAA
back to top

Coding sequence (CDS) from alignment at chr3:11237..11653+

>NO03G00040.1 ID=NO03G00040.1|Name=NO03G00040.1|organism=Nannochloropsis oceanica|type=CDS|length=207bp|location=Sequence derived from alignment at chr3:11237..11653+ (Nannochloropsis oceanica)
ATGCCACCGCCGTGGAAGCAAGTAGTGCCCGTCATCGCCTTGTTTGGCTT
GTACGGGGCATGGGTGTTGCGGGACAGGTTTGACCACCATATTGTCATGC
GAGAAGAGATCAAGGAGGACAGGCGGCGGCAAAAACGAGAGGCGAGACTA
GAAACTGCGAGAAGAGGGGCGGAAGCAGCAGCAACTGAAGAAATTAACAA
AGAATAA
back to top
Synonyms
Publications