NO03G00040, NO03G00040 (gene) Nannochloropsis oceanica

Overview
NameNO03G00040
Unique NameNO03G00040
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length417
Alignment locationchr3:11237..11653 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:11237..11653 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO03G00040 vs. NCBI_GenBank
Match: XP_005853637.1 (hypothetical protein NGA_0499201, partial [Nannochloropsis gaditana CCMP526] >EKU22724.1 hypothetical protein NGA_0499201, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 65.5 bits (158), Expect = 7.500e-8
Identity = 26/31 (83.87%), Postives = 28/31 (90.32%), Query Frame = 0 
Query:    1 MPPPWKQVVPVIALFGLYGAWVLRDRFDHHI 32
            MPPPWKQVVPV+ +F LYGAWVLRDRF HHI
Sbjct:    1 MPPPWKQVVPVVGVFALYGAWVLRDRFHHHI 31
The following BLAST results are available for this feature:
BLAST of NO03G00040 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853637.17.500e-883.87hypothetical protein NGA_0499201, partial [Nannoch... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL071nonsL071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR012ncniR012Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR055ngnoR055Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G00040.1NO03G00040.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G00040.1NO03G00040.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G00040 ID=NO03G00040|Name=NO03G00040|organism=Nannochloropsis oceanica|type=gene|length=417bp
ATGCCACCGCCGTGGAAGCAAGTAGTGCCCGTCATCGCCTTGTTTGGCTT
GTACGGGGCATGGGTGTTGCGGGACAGgtcagtgaaaaaggaggggattc
attaacgtactgctttcaataatttgtatcctggaggaatggcgattgga
gggcgggaataaggagagagtgtaagagatggggaattcggaaccattat
ggcagacgtcggagaagagggagacgcgagcgccaaacatcttagcatca
tcgacacatctctctccattgttgcctccatctacagGTTTGACCACCAT
ATTGTCATGCGAGAAGAGATCAAGGAGGACAGGCGGCGGCAAAAACGAGA
GGCGAGACTAGAAACTGCGAGAAGAGGGGCGGAAGCAGCAGCAACTGAAG
AAATTAACAAAGAATAA
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protein sequence of NO03G00040.1

>NO03G00040.1-protein ID=NO03G00040.1-protein|Name=NO03G00040.1|organism=Nannochloropsis oceanica|type=polypeptide|length=69bp
MPPPWKQVVPVIALFGLYGAWVLRDRFDHHIVMREEIKEDRRRQKREARL
ETARRGAEAAATEEINKE*
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Synonyms
Publications