NO29G01660, NO29G01660 (gene) Nannochloropsis oceanica

Overview
NameNO29G01660
Unique NameNO29G01660
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2133
Alignment locationchr29:521421..523553 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr29genomechr29:521421..523553 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO29G01660 vs. NCBI_GenBank
Match: EWM22729.1 (hypothetical protein Naga_100561g2 [Nannochloropsis gaditana] >EWM22730.1 hypothetical protein Naga_100561g2 [Nannochloropsis gaditana])

HSP 1 Score: 305.8 bits (782), Expect = 1.700e-79
Identity = 173/363 (47.66%), Postives = 229/363 (63.09%), Query Frame = 0 
Query:    1 MRFIASSRASLLLVATAAALCLPS--ALAHITVEDNFVDDAVREDILAQLP-EQTRFKHTLDLPGQLYQRILSVLHPSNTDLSLTETSVPTRGEGRFVSAHKDVFEDRSTVEGPVGLIYLEGDGRMLFQHEVTGEETVVDVRPGRLLSWDNSIYTHTLIPGDMPRRFLGPMAFRDGGMQSIGGPXXXXXXXXXXXXXXXXXXXXXXXXXXXTNTLSVSAGRIIRVTLNFMVLGMNPTRERTVRKLEDLDLVIGCVILDQ--ELRALGAHNKT-----NNANDNIAFKSSKLKPNFFKPKLTATETVEGG-LEWTLPSETTKILHPYKITWVVRVGKGAPSGTIIPIVVYVGNEWDTRLQVLVK 353
            M    SSR  LL +AT AALCL S  + A I VEDNF+D+  R+ +LAQLP E  RFKHT+DLPG++Y+R+LSVLHP N+++  ++ + P +G+   V+AHKD FED S  +  VGL+YLEGDGRM  +++VTGEET++DV+PGR LSWDN  YTH L+ G MPRR LGPMAFRDGG QSIGG                             + L   AG+ +RVT + +VL   P RER VR L   D+V  C  LD     ++L A NKT     +  +  I+F  SK+ PN ++PK+T     EG  L WTLPS+ T++L  YKIT ++R+GK  PSGT+IP+ + V +EW+  L V+VK
Sbjct:    1 MPLFVSSR-YLLSIAT-AALCLTSSFSFAKIVVEDNFIDETTRDALLAQLPSEMHRFKHTVDLPGKVYKRLLSVLHPENSEVFPSQLTAPAKGQKGMVAAHKDTFEDSSLADRQVGLVYLEGDGRMQLKNDVTGEETIIDVKPGRFLSWDNRHYTHQLLAGSMPRRILGPMAFRDGGFQSIGG-----------------GDRNRFIIQARAHPLFARAGKTVRVTADLVVLDDQPGRERAVRALPTADIVFAC-SLDPFFNFQSLTAGNKTSKHRKDGTDVGISFSRSKIAPNTWRPKITYEIVDEGDTLVWTLPSDGTRLLKKYKITIIMRIGKNVPSGTMIPLYLSVPSEWEQELGVVVK 343
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BLAST of NO29G01660 vs. NCBI_GenBank
Match: EWM22739.1 (hypothetical protein Naga_100209g9 [Nannochloropsis gaditana])

HSP 1 Score: 296.2 bits (757), Expect = 1.300e-76
Identity = 170/364 (46.70%), Postives = 226/364 (62.09%), Query Frame = 0 
Query:    1 MRFIASSRASLLLVATAAALCLPSALAH--ITVEDNFVDDAVREDILAQLP-EQTRFKHTLDLPGQLYQRILSVLHPSNTDLSLTETSVPTRGEGRFVSAHKDVFEDRSTVEGPVGLIYLEGDGRMLFQHEVTGEETVVDVRPGRLLSWDNSIYTHTLIPGDMPRRFLGPMAFRDGGMQSIGGPXXXXXXXXXXXXXXXXXXXXXXXXXXXTNTLSVSAGRIIRVTLNFMVLGMNPT-RERTVRKLEDLDLVIGCVILDQ--ELRALGAHNKT-----NNANDNIAFKSSKLKPNFFKPKLTATETVEGG-LEWTLPSETTKILHPYKITWVVRVGKGAPSGTIIPIVVYVGNEWDTRLQVLVK 353
            M    SSR  LL +AT A LCL S+ +H  I VEDNF+D+  RE +LAQLP E  RFKHT+D+PG +Y+R+LSVLHP N+++  ++ + P +G+   V+AHKD FED S  +  VGL+YLEGDGRM  +++VTGEET++DV+PGR LSWDN  YTH L+ G MPRR LGPMAFRDGG QSIG                              + L   AG+ +RVT + +VL   P  R+R VR LE  D+V  C  LD     ++L   NKT     +  +  I+F  SK+ PN ++PK+T     EG  L WTLPS+ T++L  YKIT ++R+GK  PSGT+IP+ + V  EW+  L V+VK
Sbjct:    1 MPLFVSSR-YLLSIAT-AVLCLTSSFSHAKIVVEDNFIDETTREALLAQLPSEMHRFKHTVDVPGNVYKRLLSVLHPENSEVFPSQLTAPAKGQKGMVAAHKDTFEDSSLADRQVGLVYLEGDGRMQLKNDVTGEETIIDVKPGRFLSWDNRHYTHQLLAGSMPRRILGPMAFRDGGFQSIG------------------DDPNRFIIQARAHHLFARAGKTVRVTADLVVLDDQPIGRKRAVRALETDDIVFAC-SLDPFFNFQSLTTGNKTSKHRKDGTDVGISFSRSKIAPNTWRPKITYEIVDEGDTLVWTLPSDGTRLLKKYKITIIMRIGKNVPSGTVIPLYLSVPFEWEQELGVVVK 343
The following BLAST results are available for this feature:
BLAST of NO29G01660 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM22729.11.700e-7947.66hypothetical protein Naga_100561g2 [Nannochloropsi... [more]
EWM22739.11.300e-7646.70hypothetical protein Naga_100209g9 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL062nonsL062Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR038ncniR038Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR079ngnoR079Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO29G01660.2NO29G01660.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO29G01660.1NO29G01660.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601677gene_8345Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO29G01660.2NO29G01660.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO29G01660.1NO29G01660.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO29G01660 ID=NO29G01660|Name=NO29G01660|organism=Nannochloropsis oceanica|type=gene|length=2133bp
ATCACAGGCCTCACCAGCCTATCCATCTCCTTCTCTGCTGCTCTGCTGTT
CCTCCCACGACCTTAATTGTCAGAGCATCAATATAATAGAATCATGCGAT
TTATTGCCTCCTCTCGCGCATCCCTCCTGCTGGTCGCGACCGCTGCTGCC
CTCTGCCTCCCGTCGGCCCTCGCCCACATCACAGTGGAAGATAACTTCGT
CGACGATGCGGTGCGCGAGGACATTTTGGCCCAGCTACCGGAGCAAACCC
GGTTCAAGCACACCCTGGACTTGCCTGGCCAGCTCTATCAACGAATTCTG
TCCGTCCTCCACCCCAGCAACACCGATCTCTCTCTTACCGAGACTTCGGT
GCCTACCAGGGGGGAAGGCCGTTTTGTGTCCGCGCACAAGGACGTTTTCG
AAGATCGTTCAACAGTTGAAGGGCCCGTGGGGCTGATCTACCTGGAGGGG
GATGGCCGCATGCTCTTCCAGCATGAGGTGACTGGCGAAGAGACCGTGGT
AGATGTACGGCCTGGACGATTGCTTTCGTGGGACAACAGTATCTACACCC
ACACGCTCATTCCTGGGGATATGCCTCGTCGCTTTCTTGGGCCGATGGCG
TTTCGTGATGGAGGGATGCAGTCTATAGGTGGACCCGCACCCGCTCCCAC
CCCCGCGCCCTCCCCCGCACCTACCCCTGCGCCCTCCCCTGGTGTGAGTG
TTATTGCGCAAGCGTATACTAACACCTTGAGTGTGAGTGCTGGAAGGATC
ATAAGGGTGACACTCAACTTCATGGTCCTTGGTATGAATCCCACCCGCGA
GCGTACGGTGCGAAAGTTGGAGGACTTGGACCTGGTGATCGGGgtaagga
cggagaggaataaaagagagggtgaaaatggcggacgagagcaagggaga
gtgggagggaagactaagattgcttcgctttttgataagcattaccacca
gagtctgcttaatgaccaagcttcgctgttcctaacactgctcatctcat
ttcgcgtatcctgtatcttcccatccatctatcctgcacccctccttttt
tccctttctccctctcgtcacacctccctctagTGCGTCATCTTGGATCA
GGAATTGCGAGCCCTCGGGGCGCACAACAAGACGAACAATGCCAACGATA
ATATCGCTTTCAAGTCTTCCAAGCTGAAGCCCAATTTCTTCAAGCCAAAg
tatgtatcttcccttcaatccttcctctttttcggtcgctccctgtcaga
ctgaccgggacctaagaaaaaatacatgaatcgcgccttccggcagggaa
aggccaacctatcacttgctgaagtcattgtccctccgatccttcgatcc
ctctttcttccttgtagGTTGACCGCCACTGAGACAGTCGAGGGTGGTTT
AGAGTGGACCCTCCCAAGTGAGACGACGAAGATCCTCCACCCGTACAAGA
TTACCTGGGTTGTGCGTGTGGGGAAGGGCGCACCGTCCGGTACGATTATC
CCTATCGTAGTCTATGTGGGAAATGAGTGGGATACCAGGCTGCAGGTGCT
GGTAAAGTAGAAAGGGAGGAAGGAAGGGTGGAAGAGGAGGTGGCTGGAAT
TGTACTCTGAATTTTCTGATGGATTGCAGGTATTAAGAGGAGAAGATAGA
GGATGAAGAGGAGAGGTACAGTTTGTGAAGCTATATCGTGAAAGGCATAA
ACCATAAAATGATCTACCTGAGATGATTAAATTTTCGACTGAAGTTCAAT
CATACAGGCGGGGGGAGGATGCTCCACGCACGCGTTATTTTGGGGTTTGA
GTATTCGATGAGCTAAGGAAGTGCGCATATGAGTGAGGAGCGAACAAGGA
GAGAAGTAGAGAAATAGAGAGACTTGCTTCGACGCATCTCTCTCGTACGT
GCAGCTGTTTTTTGAGGAAACCCATAAGAATGCCGAGGAAGCAAGGAGGA
AGGGAAGGAGGGAGGGAAGACATGTTTGATGCTCGGGATGGAGTTACCTT
TCGGGGAAGGAAACTCAGTCTCAGAAATTTGATCAAAGAACGATAAGAGA
TGGATTTGGGAACCGACGAAAGAAATGACCCTTCACATGCAGGCGCAAAT
CAGGCTGCGATTGTTTCGAAGGTATCTTTTATA
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protein sequence of NO29G01660.2

>NO29G01660.2-protein ID=NO29G01660.2-protein|Name=NO29G01660.2|organism=Nannochloropsis oceanica|type=polypeptide|length=353bp
MRFIASSRASLLLVATAAALCLPSALAHITVEDNFVDDAVREDILAQLPE
QTRFKHTLDLPGQLYQRILSVLHPSNTDLSLTETSVPTRGEGRFVSAHKD
VFEDRSTVEGPVGLIYLEGDGRMLFQHEVTGEETVVDVRPGRLLSWDNSI
YTHTLIPGDMPRRFLGPMAFRDGGMQSIGGPAPAPTPAPSPAPTPAPSPG
VSVIAQAYTNTLSVSAGRIIRVTLNFMVLGMNPTRERTVRKLEDLDLVIG
CVILDQELRALGAHNKTNNANDNIAFKSSKLKPNFFKPKLTATETVEGGL
EWTLPSETTKILHPYKITWVVRVGKGAPSGTIIPIVVYVGNEWDTRLQVL
VK*
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protein sequence of NO29G01660.1

>NO29G01660.1-protein ID=NO29G01660.1-protein|Name=NO29G01660.1|organism=Nannochloropsis oceanica|type=polypeptide|length=307bp
MRFIASSRASLLLVATAAALCLPSALAHITVEDNFVDDAVREDILAQLPE
QTRFKHTLDLPGQLYQRILSVLHPSNTDLSLTETSVPTRGEGRFVSAHKD
VFEDRSTVEGPVGLIYLEGDGRMLFQHEVTGEETVVDVRPGRLLSWDNSI
YTHTLIPGDMPRRFLGPMAFRDGGMQSIGGPAPAPTPAPSPAPTPAPSPG
VSVIAQAYTNTLSVSAGRIIRVTLNFMVLGMNPTRERTVRKLEDLDLVIG
CVILDQELRALGAHNKTNNANDNIAFKSSKLKPNFFKPKYVSSLQSFLFF
GRSLSD*
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Synonyms
Publications