NO29G01480.1, NO29G01480.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO29G01480.1
Unique Name	NO29G01480.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	894
Alignment location	chr29:469285..470840 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr29	genome	chr29:469285..470840 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

The following BLAST results are available for this feature:

BLAST of NO29G01480.1 vs.

BLAST of NO29G01480.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO29G01480	NO29G01480	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO29G01480.1	NO29G01480.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO29G01480.1.cds1	NO29G01480.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO29G01480.1.cds2	NO29G01480.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr29:469285..470840-
coding sequence from alignment at chr29:469285..470840-

mRNA sequence

>NO29G01480.1 ID=NO29G01480.1|Name=NO29G01480.1|organism=Nannochloropsis oceanica|type=mRNA|length=894bp
ATGGCCGCGGACGAGAAGGAGGACGAGAAGGAGGACGAGAAGGAGGAGGA
GGAGGGGGAGGAGGAGGACGAGAAGGCGGAGGCGGAGGAGGAGGACGAGA
AGGCGGAGGCGGAGGAGGCAGAGGCGGAGGTTGCGGAGGAGGAGGCGGAG
GCGGAGGAGGCGGAGGAGGCGGAGGCGGAGGAGGCGGAGGAGGAGGGGGT
GGAGGAGGAGGGGGTGGAGGCGGTGGAATTAGAGGAGAAGGAGGCGGAGG
AGAACGAGGACGAGGCGGAGGAGAACGAGGACGAGGCAGAGGAGGAGGTC
ATGGGCGGGCCATCCGAGGACTGTATTGATGTAACACCTGTGAACAGTTC
GTGTCCCGGGACGGCAATGGGGCACGCAACATCCTGCGGGTGTACAGGAG
TATGGTCCGTGGGGAAGCTCGTCCCCATGATCTTCGGTTTGGTCAACCAC
GGCAGGATATAGGGACACTCTATGTGTAGCCTTCCCGCTGACCTCCTCTT
TTATCCTCCTCCCCCCCCTCCTCCTGGCCCTGTGTGGGCCGTCCGGGGAC
TTTGCCAGGTCGAAAAACCTATCGAAGTCGCTAGAAAAACTCGGACGAGG
AATAAGGGATGACAACAATTTCTTGTTGGAAGGCTCCCCCTCGTATGCAA
GTCCTCGAAGACGTCAGGTTGCATGCGATAGTTCTAGAGAGATGTAGGAA
CGCTCAAAAGAACTAACTGGGTGTCATCGTACCCGTACCCGCGTACCCGT
ACCGTACCGTACGCGTACGCGTAGTACAGGAGGGAGACTTTGTGGCCGTG
ATGGAGTGATCACTCCGATGATGTCCAAGCTTCAGCTGCTTCTTGTCGCT
TGAGTCCATCCACAGCCACAGTAATTTCATTCTCCTGTTGTATT

protein sequence of NO29G01480.1

>NO29G01480.1-protein ID=NO29G01480.1-protein|Name=NO29G01480.1|organism=Nannochloropsis oceanica|type=polypeptide|length=154bp
MAADEKEDEKEDEKEEEEGEEEDEKAEAEEEDEKAEAEEAEAEVAEEEAE
AEEAEEAEAEEAEEEGVEEEGVEAVELEEKEAEENEDEAEENEDEAEEEV
MGGPSEDCIDVTPVNSSCPGTAMGHATSCGCTGVWSVGKLVPMIFGLVNH
GRI*

mRNA from alignment at chr29:469285..470840-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO29G01480.1 ID=NO29G01480.1|Name=NO29G01480.1|organism=Nannochloropsis oceanica|type=mRNA|length=1556bp|location=Sequence derived from alignment at chr29:469285..470840- (Nannochloropsis oceanica)
ATGGCCGCGGTCAGCTGATTGGATTTCATCATGTCAAGCATTGCATATTC
CTCCTCCACACGCCTCTAAAACATACAACCTGCTTCATCTTGCTGGGAAG
CAACTAAACTCTCGTCATGTGACTTTATAAATGCCACGGCTGCCAAAGTT
TTCCCATAATGGCCCACCCACCCTTAGTCGGTCTGTGCGGGATTAGATAC
AGCAGAATCCATCTAACCCGTGGACCTCGTCTGCAGCCCTGGCACTGAAG
CGCTCAATGTATCTCATGGAAATGCAACCATATCTGTCTGACCACTGAAA
GCTATAGATGTTTTGCTCAATCGCTCATCTTAGCGCCGCATGAGACGGCC
TGTGTATCAAAGCATCCGCGCGAGAGCTATTTTCAAGACAGCTGAAGTTC
CCACTTAATCCTTCTTCTCACTCCCAACCAACTATCTAGTGCTGTCAACC
TCACAAAATCATCATGCGTCTTGATTAATTGGGACACATCGTGAGGCCCC
TGATCTTCAGTACCTTGTTAAGGGCGTGACCTTGTGACGTAATGATATGG
CCTAACTGGGTGTCGTTCCCTTTTTACCATGAGTTTTAGTCACTTCCCTC
TTTTGTTCTCGTTGTTTGCTTGTTTCTCCCCTTTCCGAAATTGCGATTAA
AATCTGTCCCGCGTCTTTGAGGACGAGAAGGAGGACGAGAAGGAGGACGA
GAAGGAGGAGGAGGAGGGGGAGGAGGAGGACGAGAAGGCGGAGGCGGAGG
AGGAGGACGAGAAGGCGGAGGCGGAGGAGGCAGAGGCGGAGGTTGCGGAG
GAGGAGGCGGAGGCGGAGGAGGCGGAGGAGGCGGAGGCGGAGGAGGCGGA
GGAGGAGGGGGTGGAGGAGGAGGGGGTGGAGGCGGTGGAATTAGAGGAGA
AGGAGGCGGAGGAGAACGAGGACGAGGCGGAGGAGAACGAGGACGAGGCA
GAGGAGGAGGTCATGGGCGGGCCATCCGAGGACTGTATTGATGTAACACC
TGTGAACAGTTCGTGTCCCGGGACGGCAATGGGGCACGCAACATCCTGCG
GGTGTACAGGAGTATGGTCCGTGGGGAAGCTCGTCCCCATGATCTTCGGT
TTGGTCAACCACGGCAGGATATAGGGACACTCTATGTGTAGCCTTCCCGC
TGACCTCCTCTTTTATCCTCCTCCCCCCCCTCCTCCTGGCCCTGTGTGGG
CCGTCCGGGGACTTTGCCAGGTCGAAAAACCTATCGAAGTCGCTAGAAAA
ACTCGGACGAGGAATAAGGGATGACAACAATTTCTTGTTGGAAGGCTCCC
CCTCGTATGCAAGTCCTCGAAGACGTCAGGTTGCATGCGATAGTTCTAGA
GAGATGTAGGAACGCTCAAAAGAACTAACTGGGTGTCATCGTACCCGTAC
CCGCGTACCCGTACCGTACCGTACGCGTACGCGTAGTACAGGAGGGAGAC
TTTGTGGCCGTGATGGAGTGATCACTCCGATGATGTCCAAGCTTCAGCTG
CTTCTTGTCGCTTGAGTCCATCCACAGCCACAGTAATTTCATTCTCCTGT
TGTATT

Coding sequence (CDS) from alignment at chr29:469285..470840-

>NO29G01480.1 ID=NO29G01480.1|Name=NO29G01480.1|organism=Nannochloropsis oceanica|type=CDS|length=462bp|location=Sequence derived from alignment at chr29:469285..470840- (Nannochloropsis oceanica)
ATGGCCGCGGACGAGAAGGAGGACGAGAAGGAGGACGAGAAGGAGGAGGA
GGAGGGGGAGGAGGAGGACGAGAAGGCGGAGGCGGAGGAGGAGGACGAGA
AGGCGGAGGCGGAGGAGGCAGAGGCGGAGGTTGCGGAGGAGGAGGCGGAG
GCGGAGGAGGCGGAGGAGGCGGAGGCGGAGGAGGCGGAGGAGGAGGGGGT
GGAGGAGGAGGGGGTGGAGGCGGTGGAATTAGAGGAGAAGGAGGCGGAGG
AGAACGAGGACGAGGCGGAGGAGAACGAGGACGAGGCAGAGGAGGAGGTC
ATGGGCGGGCCATCCGAGGACTGTATTGATGTAACACCTGTGAACAGTTC
GTGTCCCGGGACGGCAATGGGGCACGCAACATCCTGCGGGTGTACAGGAG
TATGGTCCGTGGGGAAGCTCGTCCCCATGATCTTCGGTTTGGTCAACCAC
GGCAGGATATAG

Synonyms

Publications