NO29G01400, NO29G01400 (gene) Nannochloropsis oceanica

Overview
NameNO29G01400
Unique NameNO29G01400
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2346
Alignment locationchr29:439589..441934 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr29genomechr29:439589..441934 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO29G01400 vs. NCBI_GenBank
Match: EWM21356.1 (hypothetical protein Naga_100357g6 [Nannochloropsis gaditana])

HSP 1 Score: 302.4 bits (773), Expect = 4.200e-78
Identity = 193/427 (45.20%), Postives = 242/427 (56.67%), Query Frame = 0 
Query:  340 SMPSTLDLSFHPLTPKALASLSAALPAFICLRLRACSLTSLPKATVTSTAVHLCELDLSYNPFVPSPTFPSLMADLLAIPSLTRFSMDGVPSHVAEPLACAFENRRRTVAVPGLACVSLCDNVWSPAAWMQVLGSVLCRALYVHGIKLSREGLGERVEVREEGGNVEGVCAQSQQALREKGSALEVLATRLEAKDWMLNHLAVSFPSPGDPVSLEPSCVFRALVRPSCSLTRLDLVSSSGPFLSLSAITDLFAALCHNTSLESLDLSHATSFASFPCAEPCLRLLARALQTNPERRLRALSLRGCGLGLKGLATLLAALLPSSSSDGGMLSCAPFDSIDLAENHDTDHGIVPSMNHLHDEADVFMLSRILPQLLLPTGPXXXXXXXGKLELSGNGLVGLMNELGWHTNKDLNGWLQTSEEDGDDSLF 767
            S P  LDLSF PL+  A  SL+ ALP    LRLR+CSL+  P   +  T+  L E+DLSYNPF+PSP+   L+ DLL +PSL R  +DG PS +   LA A  + R +  +P LA +SLCDN WSPA W QVL     ++L +H + L   G G        G                            +        LA+SFPS     SL+P  + RAL RP   LT LDL SSS P+LS   +T LFAALCHNT L+SLDLSHA +FA  P  EP LRLLARAL +NP  RLR L LRGC LGL+GLATLLAAL P + ++G   S A    +DLA+N D   G+V +    HDEA +F LS+ LPQ   P G        G+L+LSGNGL+G+M+ELGW +   L   ++    D D  +F
Sbjct:   57 SFPPRLDLSFLPLSHAAATSLAGALPFLEGLRLRSCSLSQFPAPVLPPTSPRLQEVDLSYNPFLPSPSLAPLLTDLLRLPSLLRLGLDGCPSCLGPALALALAS-RSSAGIPPLARLSLCDNAWSPAIWAQVLPQACAQSLRLHDLVL---GEGRSGGDEGRGXXXXXXXXXXXXXXXXXXXXXXXXXXFADVGGEERRELALSFPSSRPKPSLQP--LLRALARPCGLLTHLDLSSSSLPYLSTDDVTQLFAALCHNTKLQSLDLSHAATFAPAPVVEPALRLLARALHSNPHARLRVLRLRGCRLGLRGLATLLAALPPVAPTEGARGSGALLSLLDLADNRDL--GVVSAGCGGHDEAALFSLSQTLPQSFPPRGSQAWIAPGGRLDLSGNGLLGVMDELGWRSYGQLRRRMEMGRIDEDRVVF 475
The following BLAST results are available for this feature:
BLAST of NO29G01400 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21356.14.200e-7845.20hypothetical protein Naga_100357g6 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL062nonsL062Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL061nonsL061Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR038ncniR038Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR081ngnoR081Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR079ngnoR079Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO29G01400.1NO29G01400.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100357g6gene9060Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO29G01400.1NO29G01400.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO29G01400 ID=NO29G01400|Name=NO29G01400|organism=Nannochloropsis oceanica|type=gene|length=2346bp
ATGCGCCGCAAGGCCCAGGAAGGGGAAGATCCTCGGGAGCGACGGATAAG
GGAAGAGCACGACGCAGCCGCTGCCTTCGTTGAGCTAGAGCGTGTCCCTT
CCTCCCTCTCTCATTCCGCCTCAGGGCAGGGTGGTGGCCATGGGGTTGGC
GGTAACGAGGGAAGCAGTAGTCGCAGCAGCAACATCAACAGCAGCAGCAG
GGAGGGAAGGGCGGTGGTTAGCCCGCGGACCTTCTTGGCGCAGTATCACA
AACGAACGTACCGCCTCTGTCACGAGAATCCCTCTCTCACTCCCTCCATT
CCTCCGTCCTCCATCCTCTCGGTCTCCTCCCTCCTCTTCCGCCTGGCTCT
CCAGGTATTGCAAGACACCCACCTCGTCCACCACCACCTCACCAGTAGCA
ACCCCAGCGGCGGTGATTCTAAGGGTGCGGAGTGGCCCTGCTTCACTTAC
CTTAGAGTGGAACGCGGGGTCAACAGCGAGGGAGAGAAAAACAGTCACGG
CGGCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCCGTAATAGTGAAC
GTTTTGCTCCCGGTCAGGCGCTGGACGTGCGGGGGATGGAGCCCGGGAAG
GCTATCCGCCTGCACTTGGGTGTGGACCCCTCTCGCTGCGTCAATCCCGT
ACCAACCGTTCTCCTCCGGTTCCTCGACGAAAGCCAGGCACGGGCCCTTC
CTCCGAATCCCGCAATGGTGGCGTCCCTGCTGATGCTGCCGCAAGTAAAG
GAAGGAGATGAGGAAGTGGAGGAGAGGCGGGTGTATGAGGCACCTGTACT
GGCGGCACGCAAAGACCTGGAAGTGCTGTGTGCGGTGTTGGAGGGCACGG
TGACAGCCGACGCAGTGGAAATTCAAGACGAGGAAGACCGAGGGAAAGGA
GGAGGGAGAGGAGGAGGGAGAGCAGGAGGTCGGATAGTGATTGATGTCGA
CGACGAGGACGAGGACGGGCTTGCAGAACCAGGCGGTCTATCGCTGCAAT
CAGCGCCTGCAGCCACGTCCATGCCCTCTACCCTGGACCTCAGCTTTCAC
CCCCTAACCCCGAAAGCCTTGGCCTCGCTTAGCGCCGCTCTTCCGGCCTT
CATTTGCCTCCGTCTCCGAGCCTGCTCTCTCACCTCTCTCCCAAAAGCAA
CCGTCACATCGACAGCAGTGCACCTCTGTGAGCTCGACCTTAGTTATAAC
CCTTTCGTCCCCTCTCCAACCTTCCCTTCCTTGATGGCTGATCTTCTGGC
CATCCCCTCCCTCACGCGCTTCTCTATGGACGGCGTGCCTTCCCATGTCG
CGGAGCCCCTTGCATGCGCGTTCGAGAATCGACGACGTACGGTTGCAGTG
CCCGGACTGGCCTGTGTAAGTCTGTGTGACAATGTCTGGTCGCCCGCGGC
ATGGATGCAGGTGCTCGGGAGTGTACTCTGTCGGGCGCTCTATGTGCATG
GCATCAAGCTGTCGAGGGAAGGTTTGGGAGAGAGGGTGGAGGTGAGGGAG
GAAGGAGGAAATGTCGAGGGGGTATGTGCACAATCACAGCAGGCCTTGAG
AGAAAAAGGCAGCGCCCTCGAAGTGTTGGCGACCCGCCTTGAGGCAAAGG
ATTGGATGCTGAATCATTTGGCAGTGTCCTTCCCATCCCCAGGAGATCCT
GTGTCGCTGGAGCCCTCCTGTGTCTTTCGGGCCTTGGTCCGACCCTCATG
TTCGTTGACCCGCCTAGACCTCGTCAGCAGCAGCGGTCCCTTCCTTTCTC
TCAGCGCCATCACCGATCTCTTCGCCGCTCTTTGCCACAACACCAGCCTC
GAGTCCCTGGACCTCTCCCATGCGACCAGCTTTGCATCCTTTCCGTGCGC
CGAACCTTGTTTGCGCCTCTTGGCGCGGGCTCTACAAACCAACCCCGAAA
GGCGCCTGCGCGCCCTTAGCCTGCGGGGCTGCGGCCTCGGTCTCAAGGGA
CTGGCGACATTATTGGCGGCGCTGCTTCCGTCTTCATCCTCAGACGGCGG
GATGCTCTCCTGTGCCCCTTTTGACTCCATAGACCTGGCAGAAAACCACG
ACACGGATCACGGTATCGTTCCATCAATGAACCACCTGCACGATGAGGCG
GACGTCTTCATGCTAAGTCGCATCTTGCCGCAGCTGCTCCTTCCGACGGG
CCCGCAGCTGCTGGCGACAACGGGCGGGAAGCTCGAGCTGTCGGGTAACG
GCCTGGTTGGATTGATGAACGAGCTGGGTTGGCATACCAACAAGGACTTG
AACGGGTGGCTGCAGACCTCCGAGGAGGACGGCGATGACTCCTTGTTCTT
TGTGAGCCCACCGGGTAGGAAGATGAATATGCCTGAAGAGGAGTGA
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protein sequence of NO29G01400.1

>NO29G01400.1-protein ID=NO29G01400.1-protein|Name=NO29G01400.1|organism=Nannochloropsis oceanica|type=polypeptide|length=782bp
MRRKAQEGEDPRERRIREEHDAAAAFVELERVPSSLSHSASGQGGGHGVG
GNEGSSSRSSNINSSSREGRAVVSPRTFLAQYHKRTYRLCHENPSLTPSI
PPSSILSVSSLLFRLALQVLQDTHLVHHHLTSSNPSGGDSKGAEWPCFTY
LRVERGVNSEGEKNSHGGSSSSSSSNSSSRNSERFAPGQALDVRGMEPGK
AIRLHLGVDPSRCVNPVPTVLLRFLDESQARALPPNPAMVASLLMLPQVK
EGDEEVEERRVYEAPVLAARKDLEVLCAVLEGTVTADAVEIQDEEDRGKG
GGRGGGRAGGRIVIDVDDEDEDGLAEPGGLSLQSAPAATSMPSTLDLSFH
PLTPKALASLSAALPAFICLRLRACSLTSLPKATVTSTAVHLCELDLSYN
PFVPSPTFPSLMADLLAIPSLTRFSMDGVPSHVAEPLACAFENRRRTVAV
PGLACVSLCDNVWSPAAWMQVLGSVLCRALYVHGIKLSREGLGERVEVRE
EGGNVEGVCAQSQQALREKGSALEVLATRLEAKDWMLNHLAVSFPSPGDP
VSLEPSCVFRALVRPSCSLTRLDLVSSSGPFLSLSAITDLFAALCHNTSL
ESLDLSHATSFASFPCAEPCLRLLARALQTNPERRLRALSLRGCGLGLKG
LATLLAALLPSSSSDGGMLSCAPFDSIDLAENHDTDHGIVPSMNHLHDEA
DVFMLSRILPQLLLPTGPQLLATTGGKLELSGNGLVGLMNELGWHTNKDL
NGWLQTSEEDGDDSLFFVSPPGRKMNMPEEE*
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Synonyms
Publications