NO29G01380, NO29G01380 (gene) Nannochloropsis oceanica

Overview
NameNO29G01380
Unique NameNO29G01380
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2487
Alignment locationchr29:437094..439580 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr29genomechr29:437094..439580 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO29G01380 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL062nonsL062Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL061nonsL061Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR038ncniR038Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR081ngnoR081Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR079ngnoR079Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005281NSK005281Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO29G01380.1NO29G01380.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO29G01380.2NO29G01380.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO29G01380.1NO29G01380.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO29G01380.2NO29G01380.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO29G01380 ID=NO29G01380|Name=NO29G01380|organism=Nannochloropsis oceanica|type=gene|length=2487bp
CAATCATCAGGCCAGCTGTCGATCACTGAAGCTAACCCCACCACGACACA
AACCAGCAATAGCTTGCCTCTGCACGTTACGTGCCTGAATCCTTTATTCT
CCAACTCCGAACTCCCGGTTTTCGCTGCACCCGTCGGACCCTTGTCTCCT
CCCGCACTCCTTTTCCCGACCAATACGACACATAAAACACACCCACCAAC
AAGACGCATGGGGCCAATTGGTACCACCGAGATCGCGGGCGCTGGTGCCG
GGGCGACGATCGAGGTGCTTCGCTTCTTGCACGAGGAAGTGCAGgtgagt
catgggagagatgtgtccggcggcgtgtctgttttaatctagccttcacc
caccgctttcttcacattatccttgtctgcagGGCCGCTTGCTGCCGCGA
GTGAGAGAAGAGTACGACGCCTTTGAGGCTCTGACCCTGGACGTGATTGT
CAAGATGAAGGAGAAGgtgcgtgagaccgaaaccggagggagggctagag
tggggccccgaaagcctgcgggtcatacgccgcgcatctttattgtgaat
gtgtacagtagcaagaaagagggagagagcttgccaacacgtgggtgctc
caatctcatttctccatcatcacatctctccctagGACGAGGACCAGCTG
GTGAAGCGGAAACAGCAAGAAGTCAAGCCCAAAAAGCGGCTGCTTTCCTC
CGTTTCCACGTCAACCACCCACAGTTCCGTTCCTTCTGCTCCATATCCCA
CCCTCAGTGCTTGCCAAAAGGAATTGTGCCGCAGATGGTTCGTTCGCTTC
GTGGCCATGAATGATTGGCTCATCCATGCCCGCACCGGCCTCACCCGCCA
CAGCTACCAGCAGCATCCACAATCTCCGTTGCATTACCAGCAGCAAGTGC
CCAAGGGCATCGTGCGgtacgagtagtgagaaacaaaacgatgaagaaga
ttgaaggcactactgcagggggttttcgtccgctcggcctctcttccctc
atcgcacgtcgccctttgctccctcctctcccttcacctcatttggaacc
aaagGTACTGCGATCTGGACGCACGGCACCGGCTGTGCAACTACAAGGGT
AGCGCCGGAGCCTATTCCACCTCTTGCCTCGACAACGCACTGGCCGCCGC
CCGCCTGTTCCTGGCGGCCGGGAGCAAGAAgtgagtacgcatggggggga
gggagagaggggtgagagggggcgatgcaagcaggcttgacctgtgcggc
gacggtttgtttctatgcacgtctcaaccacaccccatcacagACACCAT
GTTGTCGCTGAGTCACTAGACGCCTCCCTCTGCGAGTGCGACAATCGGCT
GCAGgtgcgtctcttcacctcttccccttctcttcactccctccatctaa
accctaatccgcctccctccttcgctccctccctcatccagGACATAGCC
ACCAAGGTGGTAACATTGGTGGATCGCTTCAAGTTGTCGTTGCCGGTGCC
TCTTCGTCTTGACCGGAACCATGGGAGTGAAAGCTTGGAGgtaggggaga
gggggagggaggcagggagggagggagagtcagaggaatgagtctccagg
tcttatgggaaagagaggtggcaggatagagagaaaatgtccccgcattt
cctgttttcatctcatcatggccctgccagtacactctgccccccccccc
cccctccccatggatgttgatttcaagccacgcctcggatgcctttacac
ttgtacccataccacacgtcttccatgcacatcatactcataacgcacgt
ctcccacaatacacgtcttgtgtgcacatcaaacttataacgtacgtctt
ccatgcacaccatgcacgtttctagGGTGTGACTGCCTCCCGCGGCTGCC
TCGAGCCTCCCTCCAAGAAGGGCAAGAGAGGACCTGCGGCCATGGAAACG
GCCAAGGAGAAAAACAGGGCGAAAGGACAGGATGGAGGGTGTGAAGATGC
GCTGGTAAATCCATCCGTATGCAGATGCCCTGTCGCTCACCAAGGCCGCT
GGTGGTACGTGATTCCATTCATAGACCCCTTACAGGGCCCGTCTTTCCCG
ATATTGCCCATCCACCTCCTGCGTACGCACGTGCATTGGACTTGCCCGTC
TTTTTCATTCAACCTCTTCTCCTCCTCCTCCTCCTCCTCCTATTCCTTCT
CTTTTATCTCTTGCGACACTTACTCCTTCACCCCACCCTTTCAAACCCAA
CCGTTATCCCTTAGATCATATTATATCTTATATCCCCTTCTTCCCTCTAG
GCTGGAGCCACCCTCCCTCGCCTCCGGTTGTTCCTCCCAAGAAGTGAAGG
TCTACAACATCGGCTTCGCGTCTGCACTTTCCGACTTGGAGGACAATTAT
TTCGATGAGGGGGGGGGGGCACATGCGAGCGAGGGGGGATTGGGAGGGAG
GGCATGGGGCGGAAGGAGCTGGTCTACGTGTCGGTAG
back to top

protein sequence of NO29G01380.1

>NO29G01380.1-protein ID=NO29G01380.1-protein|Name=NO29G01380.1|organism=Nannochloropsis oceanica|type=polypeptide|length=368bp
MGPIGTTEIAGAGAGATIEVLRFLHEEVQGRLLPRVREEYDAFEALTLDV
IVKMKEKDEDQLVKRKQQEVKPKKRLLSSVSTSTTHSSVPSAPYPTLSAC
QKELCRRWFVRFVAMNDWLIHARTGLTRHSYQQHPQSPLHYQQQVPKGIV
RYCDLDARHRLCNYKGSAGAYSTSCLDNALAAARLFLAAGSKKHHVVAES
LDASLCECDNRLQDIATKVVTLVDRFKLSLPVPLRLDRNHGSESLEGVTA
SRGCLEPPSKKGKRGPAAMETAKEKNRAKGQDGGCEDALVNPSVCRCPVA
HQGRWWLEPPSLASGCSSQEVKVYNIGFASALSDLEDNYFDEGGGAHASE
GGLGGRAWGGRSWSTCR*
back to top

protein sequence of NO29G01380.2

>NO29G01380.2-protein ID=NO29G01380.2-protein|Name=NO29G01380.2|organism=Nannochloropsis oceanica|type=polypeptide|length=450bp
MGPIGTTEIAGAGAGATIEVLRFLHEEVQGRLLPRVREEYDAFEALTLDV
IVKMKEKDEDQLVKRKQQEVKPKKRLLSSVSTSTTHSSVPSAPYPTLSAC
QKELCRRWFVRFVAMNDWLIHARTGLTRHSYQQHPQSPLHYQQQVPKGIV
RYCDLDARHRLCNYKGSAGAYSTSCLDNALAAARLFLAAGSKKHHVVAES
LDASLCECDNRLQDIATKVVTLVDRFKLSLPVPLRLDRNHGSESLEGVTA
SRGCLEPPSKKGKRGPAAMETAKEKNRAKGQDGGCEDALVNPSVCRCPVA
HQGRWWYVIPFIDPLQGPSFPILPIHLLRTHVHWTCPSFSFNLFSSSSSS
SYSFSFISCDTYSFTPPFQTQPLSLRSYYILYPLLPSRLEPPSLASGCSS
QEVKVYNIGFASALSDLEDNYFDEGGGAHASEGGLGGRAWGGRSWSTCR*
back to top
Synonyms
Publications