NO29G00740.1, NO29G00740.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO29G00740.1
Unique NameNO29G00740.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length921
Alignment locationchr29:275442..276654 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr29genomechr29:275442..276654 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO29G00740.1 vs.
Match: EWM21298.1 (succinate dehydrogenase subunit 4 [Nannochloropsis gaditana])

HSP 1 Score: 197.2 bits (500), Expect = 4.000e-47
Identity = 97/125 (77.60%), Postives = 108/125 (86.40%), Query Frame = 0 
Query:   41 RGISSGQPKKVNIQSLVEADSGTIGTKFYHLSNTTLLVAAPLAFFLSPSILSFPLDLFLGVVFPLHAHIGFNYIISDYVPKASRAAARYALMAVTGVTILGLTKMNLEGPGLTESFKSLWREEKK 166
            R IS+GQPKKVN+QSLVEADSG +GTKFYHLSNT LLVAAPLA FLSPS L+FPLDLFLGV FP+H HIG NYIISDYVP+ASR  ARY L+  T VT+LGL K+NL GPGLTE++KSLWR EKK
Sbjct:   38 RCISTGQPKKVNVQSLVEADSGAVGTKFYHLSNTALLVAAPLALFLSPSPLTFPLDLFLGVAFPVHGHIGINYIISDYVPRASRPLARYVLLGATTVTVLGLLKLNLSGPGLTETYKSLWRAEKK 162
The following BLAST results are available for this feature:
BLAST of NO29G00740.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21298.14.000e-4777.60succinate dehydrogenase subunit 4 [Nannochloropsis... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO29G00740NO29G00740Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO29G00740.1NO29G00740.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO29G00740.1.cds1NO29G00740.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO29G00740.1.cds2NO29G00740.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO29G00740.1 ID=NO29G00740.1|Name=NO29G00740.1|organism=Nannochloropsis oceanica|type=mRNA|length=921bp
TTTTTATCGATGATTTTATAACTCGTCCATTCAATATCTTTGTGACTCGT
CCATTTAATATCTTTTTGAGGCAAGGATAAAGGTTGAAAACGTTAGGAGG
AGGAGGAGAAAGTATGTGGGACTTAAAGGAAGCGCAGGGCGCATTGCACC
ACACTCGACGCTCGCTGATCTCGAACGTTGCAGCCGCGCGCACAGCGACA
ACGGCCTTGAAGCAGCGATGTCTCTGCAATTCAATGCCCGCACCACGCCA
GTACCGACAGGACGCACGCACTCATGCTCCATTCGATCTCACCCACGACA
CTTAGAGCGATATGTTTGCCCCCCTTTCCCTGACACTGGCGCGTCGCGCG
GCCGCCGCTGCTCCTGCCTCCACATCGCTGATGATGCTGCGTCGACCTGC
TCTTGCTCCTGCGGCTTCCGCTCCCCTCCGACGAGGAATCAGCTCGGGAC
AGCCAAAGAAAGTGAACATCCAATCTCTCGTCGAAGCTGACTCCGGCACC
ATAGGGACCAAATTTTATCACTTGAGTAACACTACCCTCCTCGTCGCCGC
CCCGCTCGCCTTCTTCCTCTCCCCCTCCATCCTATCATTTCCCTTGGATC
TCTTTCTGGGAGTGGTATTCCCCTTACATGCGCACATTGGGTTTAATTAC
ATTATATCTGACTATGTGCCCAAGGCTTCCAGGGCAGCGGCACGTTATGC
CTTGATGGCTGTGACGGGCGTTACGATTTTAGGCCTGACGAAGATGAATT
TGGAAGGGCCAGGTTTGACGGAGAGCTTCAAGAGCCTGTGGAGGGAGGAG
AAGAAGTGAGCTGGGGGAGGGAGGAAATGAGGGAGGGCAGGAGAAAAAGG
AGATGAAGATGTGGGAAAATAGATTTAATCTGGAGGGTGGGAGGATGGTA
TTGTAAGATGGAAAGGGGGGG
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protein sequence of NO29G00740.1

>NO29G00740.1-protein ID=NO29G00740.1-protein|Name=NO29G00740.1|organism=Nannochloropsis oceanica|type=polypeptide|length=166bp
MFAPLSLTLARRAAAAAPASTSLMMLRRPALAPAASAPLRRGISSGQPKK
VNIQSLVEADSGTIGTKFYHLSNTTLLVAAPLAFFLSPSILSFPLDLFLG
VVFPLHAHIGFNYIISDYVPKASRAAARYALMAVTGVTILGLTKMNLEGP
GLTESFKSLWREEKK*
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mRNA from alignment at chr29:275442..276654-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO29G00740.1 ID=NO29G00740.1|Name=NO29G00740.1|organism=Nannochloropsis oceanica|type=mRNA|length=1213bp|location=Sequence derived from alignment at chr29:275442..276654- (Nannochloropsis oceanica)
TTTTTATCGATGATTTTATAACTCGTCCATTCAATATCTTTGTGACTCGT
CCATTTAATATCTTTTTGAGGCAAGGATAAAGGTTGAAAACGTTAGGAGG
AGGAGGAGAAAGTATGTGGGACTTAAAGGAAGCGCAGGGCGCATTGCACC
ACACTCGACGCTCGCTGATCTCGAACGTTGCAGCCGCGCGCACAGCGACA
ACGGCCTTGAAGCAGCGATGTCTCTGCAATTCAATGCCCGCACCACGCCA
GTACCGACAGGACGCACGCACTCATGCTCCATTCGATCTCACCCACGACA
CTTAGAGCGATATGTTTGCCCCCCTTTCCCTGACACTGGCGCGTCGCGCG
GCCGCCGCTGCTCCTGCCTCCACATCGCTGATGATGCTGCGTCGACCTGC
TCTTGCTCCTGCGGCTTCCGCTCCCCTCCGACGAGGAATCAGCTCGGGAC
AGCCAAAGAAAGGTACGTTGGCATTTTGGCAGGGGTAGGTGGGAAGGTGG
CTGCGGTAGTGGCCGAGGGAAGGGGCGAAAGAGTGATGCGTCATGGGCCT
TGCTTTTGGTGCAGGTGCTCTTGGCGAGTCGTCCACTTTCCGGTTACACA
AGCAACCACCTATCCACAGCGCAGGCGTATATGTGAGTGCGTGCTACGTC
GGGATCATGTAGAAAAGATGGGACTCTGCTTTTATTAAAAAATATTTCGC
CATCTTTTCGCTCGCTCCCTCCCTCCCTTCCTCCCTTCATTTGCACCCAT
GCAGTGAACATCCAATCTCTCGTCGAAGCTGACTCCGGCACCATAGGGAC
CAAATTTTATCACTTGAGTAACACTACCCTCCTCGTCGCCGCCCCGCTCG
CCTTCTTCCTCTCCCCCTCCATCCTATCATTTCCCTTGGATCTCTTTCTG
GGAGTGGTATTCCCCTTACATGCGCACATTGGGTTTAATTACATTATATC
TGACTATGTGCCCAAGGCTTCCAGGGCAGCGGCACGTTATGCCTTGATGG
CTGTGACGGGCGTTACGATTTTAGGCCTGACGAAGATGAATTTGGAAGGG
CCAGGTTTGACGGAGAGCTTCAAGAGCCTGTGGAGGGAGGAGAAGAAGTG
AGCTGGGGGAGGGAGGAAATGAGGGAGGGCAGGAGAAAAAGGAGATGAAG
ATGTGGGAAAATAGATTTAATCTGGAGGGTGGGAGGATGGTATTGTAAGA
TGGAAAGGGGGGG
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Coding sequence (CDS) from alignment at chr29:275442..276654-

>NO29G00740.1 ID=NO29G00740.1|Name=NO29G00740.1|organism=Nannochloropsis oceanica|type=CDS|length=498bp|location=Sequence derived from alignment at chr29:275442..276654- (Nannochloropsis oceanica)
ATGTTTGCCCCCCTTTCCCTGACACTGGCGCGTCGCGCGGCCGCCGCTGC
TCCTGCCTCCACATCGCTGATGATGCTGCGTCGACCTGCTCTTGCTCCTG
CGGCTTCCGCTCCCCTCCGACGAGGAATCAGCTCGGGACAGCCAAAGAAA
GTGAACATCCAATCTCTCGTCGAAGCTGACTCCGGCACCATAGGGACCAA
ATTTTATCACTTGAGTAACACTACCCTCCTCGTCGCCGCCCCGCTCGCCT
TCTTCCTCTCCCCCTCCATCCTATCATTTCCCTTGGATCTCTTTCTGGGA
GTGGTATTCCCCTTACATGCGCACATTGGGTTTAATTACATTATATCTGA
CTATGTGCCCAAGGCTTCCAGGGCAGCGGCACGTTATGCCTTGATGGCTG
TGACGGGCGTTACGATTTTAGGCCTGACGAAGATGAATTTGGAAGGGCCA
GGTTTGACGGAGAGCTTCAAGAGCCTGTGGAGGGAGGAGAAGAAGTGA
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Synonyms
Publications