NO29G00740, NO29G00740 (gene) Nannochloropsis oceanica

Overview
NameNO29G00740
Unique NameNO29G00740
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1213
Alignment locationchr29:275442..276654 -

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Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr29genomechr29:275442..276654 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0005740mitochondrial envelope
GO:0016020membrane
GO:0005739mitochondrion
Vocabulary: INTERPRO
TermDefinition
IPR007992CybS
Homology
[Close]
BLAST of NO29G00740 vs. NCBI_GenBank
Match: EWM21298.1 (succinate dehydrogenase subunit 4 [Nannochloropsis gaditana])

HSP 1 Score: 197.2 bits (500), Expect = 4.000e-47
Identity = 97/125 (77.60%), Postives = 108/125 (86.40%), Query Frame = 0 
Query:   41 RGISSGQPKKVNIQSLVEADSGTIGTKFYHLSNTTLLVAAPLAFFLSPSILSFPLDLFLGVVFPLHAHIGFNYIISDYVPKASRAAARYALMAVTGVTILGLTKMNLEGPGLTESFKSLWREEKK 166
            R IS+GQPKKVN+QSLVEADSG +GTKFYHLSNT LLVAAPLA FLSPS L+FPLDLFLGV FP+H HIG NYIISDYVP+ASR  ARY L+  T VT+LGL K+NL GPGLTE++KSLWR EKK
Sbjct:   38 RCISTGQPKKVNVQSLVEADSGAVGTKFYHLSNTALLVAAPLALFLSPSPLTFPLDLFLGVAFPVHGHIGINYIISDYVPRASRPLARYVLLGATTVTVLGLLKLNLSGPGLTETYKSLWRAEKK 162
[Close]
BLAST of NO29G00740 vs. NCBI_GenBank
Match: GAX95788.1 (Hypothetical protein PINS_003671 [Pythium insidiosum])

HSP 1 Score: 129.8 bits (325), Expect = 7.800e-27
Identity = 63/113 (55.75%), Postives = 80/113 (70.80%), Query Frame = 0 
Query:   53 IQSLVEADSGTIGTKFYHLSNTTLLVAAPLAFFLSPSILSFPLDLFLGVVFPLHAHIGFNYIISDYVPKASRAAARYALMAVTGVTILGLTKMNLEGPGLTESFKSLWREEKK 166
            +  ++EAD+ T   K YHLS+  LL   P AF LSPS+LS P+D  LGV+ P+HAHIG N +ISDYVPKA R  AR A + VTGV  LG+ + N+EGPGLTE+ K+ WRE+ K
Sbjct:   43 LAGVLEADNATFSHKVYHLSSLALLGLVPAAFVLSPSVLSVPVDYALGVIIPVHAHIGMNNVISDYVPKAHRTLARLAWLGVTGVMFLGILRNNIEGPGLTETLKTFWREDPK 155
[Close]
BLAST of NO29G00740 vs. NCBI_GenBank
Match: CBJ31514.1 (SDH4, succinate dehydrogenase subunit 4 [Ectocarpus siliculosus])

HSP 1 Score: 123.6 bits (309), Expect = 5.600e-25
Identity = 66/137 (48.18%), Postives = 87/137 (63.50%), Query Frame = 0 
Query:   31 LAPAASAPLRRGISSGQPKKVNI---QSLVEADSGTIGTKFYHLSNTTLLVAAPLAFFLSPSILSFPLDLFLGVVFPLHAHIGFNYIISDYVPKASRAAARYALMAVTGVTILGLTKMNLEGPGLTESFKSLWREEK 165
            L P  +A +RR + S  PK  +     S++ AD G +GTK YH  N  +L   P A   SPS L+ PLD+ LG+  PLHAHIG NY+ISDYVPK++R  AR A++A + +  LGL K+NL G GLTE+ K+ WR  K
Sbjct:   12 LRPVVTAHVRR-LHSSVPKTSSAPGSASVLNADDGKLGTKLYHAVNMVVLAGVPAAVATSPSALTMPLDIVLGIAMPLHAHIGMNYVISDYVPKSARGGARGAMLAASVLATLGLLKLNLTGAGLTETLKATWRGPK 147
[Close]
BLAST of NO29G00740 vs. NCBI_GenBank
Match: XP_008914619.1 (hypothetical protein PPTG_18312 [Phytophthora parasitica INRA-310] >ETI32077.1 hypothetical protein F443_21010 [Phytophthora parasitica P1569] >ETK72465.1 hypothetical protein L915_20413 [Phytophthora parasitica] >ETL25943.1 hypothetical protein L916_20273 [Phytophthora parasitica] >ETL79139.1 hypothetical protein L917_20146 [Phytophthora parasitica] >ETM32397.1 hypothetical protein L914_20170 [Phytophthora parasitica] >ETN00035.1 hypothetical protein PPTG_18312 [Phytophthora parasitica INRA-310] >ETO60845.1 hypothetical protein F444_21015 [Phytophthora parasitica P1976] >ETP01958.1 hypothetical protein F441_20879 [Phytophthora parasitica CJ01A1] >ETP30103.1 hypothetical protein F442_20820 [Phytophthora parasitica P10297])

HSP 1 Score: 119.4 bits (298), Expect = 1.100e-23
Identity = 58/110 (52.73%), Postives = 76/110 (69.09%), Query Frame = 0 
Query:   53 IQSLVEADSGTIGTKFYHLSNTTLLVAAPLAFFLSPSILSFPLDLFLGVVFPLHAHIGFNYIISDYVPKASRAAARYALMAVTGVTILGLTKMNLEGPGLTESFKSLWRE 163
            +  +VEAD+  +  K  HL++  L+ A PLAF LSPS L FP+DL LGV+ P+HAHIG N +ISDYVPK  R  AR   +  T +  LGL ++NLEGPG+TE  K++WRE
Sbjct:   45 LAGIVEADNHALSVKLQHLTSVGLMGAVPLAFVLSPSPLVFPVDLILGVILPVHAHIGMNNVISDYVPKNVRTLARLGWLGATSLMFLGLLRVNLEGPGITEVVKTVWRE 154
[Close]
BLAST of NO29G00740 vs. NCBI_GenBank
Match: KUF82283.1 (hypothetical protein AM587_10007617 [Phytophthora nicotianae])

HSP 1 Score: 119.4 bits (298), Expect = 1.100e-23
Identity = 58/110 (52.73%), Postives = 76/110 (69.09%), Query Frame = 0 
Query:   53 IQSLVEADSGTIGTKFYHLSNTTLLVAAPLAFFLSPSILSFPLDLFLGVVFPLHAHIGFNYIISDYVPKASRAAARYALMAVTGVTILGLTKMNLEGPGLTESFKSLWRE 163
            +  +VEAD+  +  K  HL++  L+ A PLAF LSPS L FP+DL LGV+ P+HAHIG N +ISDYVPK  R  AR   +  T +  LGL ++NLEGPG+TE  K++WRE
Sbjct:   44 LAGIVEADNHALSVKLQHLTSVGLMGAVPLAFVLSPSPLVFPVDLILGVILPVHAHIGMNNVISDYVPKNVRTLARLGWLGATSLMFLGLLRVNLEGPGITEVVKTVWRE 153
[Close]
BLAST of NO29G00740 vs. NCBI_GenBank
Match: XP_009520355.1 (hypothetical protein PHYSODRAFT_285034 [Phytophthora sojae] >EGZ25067.1 hypothetical protein PHYSODRAFT_285034 [Phytophthora sojae])

HSP 1 Score: 117.9 bits (294), Expect = 3.100e-23
Identity = 56/110 (50.91%), Postives = 77/110 (70.00%), Query Frame = 0 
Query:   53 IQSLVEADSGTIGTKFYHLSNTTLLVAAPLAFFLSPSILSFPLDLFLGVVFPLHAHIGFNYIISDYVPKASRAAARYALMAVTGVTILGLTKMNLEGPGLTESFKSLWRE 163
            +  +VEAD+  + TK  HL++  L+   PLAF LSPS L+ P+DL LGV+ P+HAHIG N +ISDYVPK+ R  AR   +  T +  LGL ++N+EGPG+TE  K++WRE
Sbjct:   45 LAGIVEADNHVLSTKVQHLTSIGLMATVPLAFVLSPSPLALPVDLALGVILPVHAHIGMNNVISDYVPKSVRMLARLGWLGATSLMFLGLLRVNVEGPGITEVVKTVWRE 154
[Close]
BLAST of NO29G00740 vs. NCBI_GenBank
Match: XP_002901029.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY59419.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 115.5 bits (288), Expect = 1.500e-22
Identity = 62/137 (45.26%), Postives = 84/137 (61.31%), Query Frame = 0 
Query:   32 APAASAPLRRGISSGQPK------KVNIQSLVEADSGTIGTKFYHLSNTTLLVAAPLAFFLSPSILSFPLDLFLGVVFPLHAHIGFNYIISDYVPKASRAAARYALMAVTGVTILGLTKMNLEGPGLTESFKSLWRE 163
            AP  S+ +R    S   K         +  +VEAD+  +  K  HL++ +L+ A PLAF LSPS L  P+DL LG++ P+HAHIG N +ISDYVPK  R  AR   +  T +  LGL ++NLEGPG+TE  K++WRE
Sbjct:   18 APRPSSSVRHFRKSAPTKYTENKEVTGLAGIVEADNHALSVKLQHLTSVSLMGAVPLAFVLSPSPLVLPVDLALGLILPVHAHIGMNNVISDYVPKNVRTLARLGWLGATSLMFLGLLRVNLEGPGITEVVKTVWRE 154
[Close]
BLAST of NO29G00740 vs. NCBI_GenBank
Match: OWZ20420.1 (SDH4, succinate dehydrogenase subunit 4 [Phytophthora megakarya])

HSP 1 Score: 114.8 bits (286), Expect = 2.600e-22
Identity = 55/110 (50.00%), Postives = 74/110 (67.27%), Query Frame = 0 
Query:   53 IQSLVEADSGTIGTKFYHLSNTTLLVAAPLAFFLSPSILSFPLDLFLGVVFPLHAHIGFNYIISDYVPKASRAAARYALMAVTGVTILGLTKMNLEGPGLTESFKSLWRE 163
            +  +VEAD+  +  K  HL++  L+ A PLAF LSPS L  P+DL +GV+ P+HAHIG N +ISDYVPK  R   R   +  T +  LGL ++NLEGPG+TE  K++WRE
Sbjct:   40 LAGIVEADNHKLSVKLQHLTSVALMGAVPLAFVLSPSPLVLPVDLAMGVILPVHAHIGMNNVISDYVPKNMRTLVRLGWLGATSLMFLGLLRVNLEGPGITEVVKTVWRE 149
[Close]
BLAST of NO29G00740 vs. NCBI_GenBank
Match: XP_024575663.1 (protein [Plasmopara halstedii] >CEG39294.1 protein [Plasmopara halstedii])

HSP 1 Score: 114.4 bits (285), Expect = 3.400e-22
Identity = 55/112 (49.11%), Postives = 80/112 (71.43%), Query Frame = 0 
Query:   56 LVEADSGTIGTKFYHLSNTTLLVAAPLAFFLSPSILSFPLDLFLGVVFPLHAHIGFNYIISDYVPKASRAAARYALMAVTGVTILGLTKMNLEGPGLTESFKSLWRE--EKK 166
            ++EAD+  +  K  HL++  L+ A P+AF LSPS L+FP+D+ +GV+ P+HAHIG N +ISDYVP++ R  AR   +  T +  +GL ++NLEGPG+TE  K++WRE  EKK
Sbjct:   44 ILEADNHALSVKAMHLTSLGLMAAVPVAFVLSPSPLAFPVDMAMGVMLPVHAHIGMNNVISDYVPQSMRTLARLGWLGATSLMFVGLLRVNLEGPGITEVVKTIWRESPEKK 155
[Close]
BLAST of NO29G00740 vs. NCBI_GenBank
Match: CCA26648.1 (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 110.9 bits (276), Expect = 3.800e-21
Identity = 51/112 (45.54%), Postives = 73/112 (65.18%), Query Frame = 0 
Query:   53 IQSLVEADSGTIGTKFYHLSNTTLLVAAPLAFFLSPSILSFPLDLFLGVVFPLHAHIGFNYIISDYVPKASRAAARYALMAVTGVTILGLTKMNLEGPGLTESFKSLWREEK 165
            +  +V+AD+    TK YH ++  LL   P AF LSPS LS PLD  + ++ P+HAHIG N +ISDY+PK  +   R A +   G+  LGL ++N+EGPG+TE+ K+ WR+ K
Sbjct:   56 LAGIVQADNAVGYTKLYHFTSVGLLAVTPCAFALSPSTLSMPLDWAMSILIPVHAHIGMNNVISDYIPKPQQPVIRLAWLGAAGLMCLGLIRLNVEGPGITETIKTFWRQPK 167
The following BLAST results are available for this feature:
BLAST of NO29G00740 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM21298.14.000e-4777.60succinate dehydrogenase subunit 4 [Nannochloropsis... [more]
GAX95788.17.800e-2755.75Hypothetical protein PINS_003671 [Pythium insidios... [more]
CBJ31514.15.600e-2548.18SDH4, succinate dehydrogenase subunit 4 [Ectocarpu... [more]
XP_008914619.11.100e-2352.73hypothetical protein PPTG_18312 [Phytophthora para... [more]
KUF82283.11.100e-2352.73hypothetical protein AM587_10007617 [Phytophthora ... [more]
XP_009520355.13.100e-2350.91hypothetical protein PHYSODRAFT_285034 [Phytophtho... [more]
XP_002901029.11.500e-2245.26conserved hypothetical protein [Phytophthora infes... [more]
OWZ20420.12.600e-2250.00SDH4, succinate dehydrogenase subunit 4 [Phytophth... [more]
XP_024575663.13.400e-2249.11protein [Plasmopara halstedii] >CEG39294.1 protein... [more]
CCA26648.13.800e-2145.54conserved hypothetical protein [Albugo laibachii N... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL061nonsL061Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR038ncniR038Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR081ngnoR081Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005193NSK005193Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO29G00740.1NO29G00740.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601290gene_8248Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100997g3gene9126Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO29G00740.1NO29G00740.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO29G00740 ID=NO29G00740|Name=NO29G00740|organism=Nannochloropsis oceanica|type=gene|length=1213bp
TTTTTATCGATGATTTTATAACTCGTCCATTCAATATCTTTGTGACTCGT
CCATTTAATATCTTTTTGAGGCAAGGATAAAGGTTGAAAACGTTAGGAGG
AGGAGGAGAAAGTATGTGGGACTTAAAGGAAGCGCAGGGCGCATTGCACC
ACACTCGACGCTCGCTGATCTCGAACGTTGCAGCCGCGCGCACAGCGACA
ACGGCCTTGAAGCAGCGATGTCTCTGCAATTCAATGCCCGCACCACGCCA
GTACCGACAGGACGCACGCACTCATGCTCCATTCGATCTCACCCACGACA
CTTAGAGCGATATGTTTGCCCCCCTTTCCCTGACACTGGCGCGTCGCGCG
GCCGCCGCTGCTCCTGCCTCCACATCGCTGATGATGCTGCGTCGACCTGC
TCTTGCTCCTGCGGCTTCCGCTCCCCTCCGACGAGGAATCAGCTCGGGAC
AGCCAAAGAAAGgtacgttggcattttggcaggggtaggtgggaaggtgg
ctgcggtagtggccgagggaaggggcgaaagagtgatgcgtcatgggcct
tgcttttggtgcaggtgctcttggcgagtcgtccactttccggttacaca
agcaaccacctatccacagcgcaggcgtatatgtgagtgcgtgctacgtc
gggatcatgtagaaaagatgggactctgcttttattaaaaaatatttcgc
catcttttcgctcgctccctccctcccttcctcccttcatttgcacccat
gcagTGAACATCCAATCTCTCGTCGAAGCTGACTCCGGCACCATAGGGAC
CAAATTTTATCACTTGAGTAACACTACCCTCCTCGTCGCCGCCCCGCTCG
CCTTCTTCCTCTCCCCCTCCATCCTATCATTTCCCTTGGATCTCTTTCTG
GGAGTGGTATTCCCCTTACATGCGCACATTGGGTTTAATTACATTATATC
TGACTATGTGCCCAAGGCTTCCAGGGCAGCGGCACGTTATGCCTTGATGG
CTGTGACGGGCGTTACGATTTTAGGCCTGACGAAGATGAATTTGGAAGGG
CCAGGTTTGACGGAGAGCTTCAAGAGCCTGTGGAGGGAGGAGAAGAAGTG
AGCTGGGGGAGGGAGGAAATGAGGGAGGGCAGGAGAAAAAGGAGATGAAG
ATGTGGGAAAATAGATTTAATCTGGAGGGTGGGAGGATGGTATTGTAAGA
TGGAAAGGGGGGG
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protein sequence of NO29G00740.1

>NO29G00740.1-protein ID=NO29G00740.1-protein|Name=NO29G00740.1|organism=Nannochloropsis oceanica|type=polypeptide|length=166bp
MFAPLSLTLARRAAAAAPASTSLMMLRRPALAPAASAPLRRGISSGQPKK
VNIQSLVEADSGTIGTKFYHLSNTTLLVAAPLAFFLSPSILSFPLDLFLG
VVFPLHAHIGFNYIISDYVPKASRAAARYALMAVTGVTILGLTKMNLEGP
GLTESFKSLWREEKK*
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Synonyms
Publications