NO29G00640, NO29G00640 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO29G00640 vs. NCBI_GenBank
Match: EWM21287.1 (TatA-like sec-independent protein translocator subunit [Nannochloropsis gaditana]) HSP 1 Score: 160.2 bits (404), Expect = 6.200e-36 Identity = 94/137 (68.61%), Postives = 109/137 (79.56%), Query Frame = 0 Query: 9 ILALLVLLFGACADAFLPS-ITRPASTTTARRLQPHTPSSASSLLVTRPQSSPLSSLQQRSRGQPLYGIFGLGTPELVVIALVAGIVLGPDKIVDLARGVGKAAGELKAVPQEFEKGLKTGEEAAVKTKADLARESK 145 + LVL + + AFLPS P T+ A RLQ +S +SL +RP ++ SS+Q R RGQPLYGIFGLGTPELVVIALVAGIVLGPDKIVDLARGVGKAAGELKAVPQEFEKGLK+GE+AAV+TKADLA+E+K Sbjct: 29 VFTFLVLCWLSSVQAFLPSRAPSPLLTSGAGRLQHRITTSTASLYPSRPLTTFHSSIQHRLRGQPLYGIFGLGTPELVVIALVAGIVLGPDKIVDLARGVGKAAGELKAVPQEFEKGLKSGEDAAVQTKADLAKEAK 165
BLAST of NO29G00640 vs. NCBI_GenBank
Match: XP_002181489.1 (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >EEC46703.1 predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 72.4 bits (176), Expect = 1.700e-9 Identity = 35/66 (53.03%), Postives = 46/66 (69.70%), Query Frame = 0 Query: 75 GIFGLGTPELVVIALVAGIVLGPDKIVDLARGVGKAAGELKAVPQEFEKGLKTGEEAAVKTKADLA 141 G+FGLG PEL VIA+ A +LGP K+ +L + GK AGELK VP EF+KGL+ GE A K +++ Sbjct: 2 GLFGLGVPELAVIAIAAAFLLGPQKLAELGKDAGKIAGELKEVPAEFQKGLQEGETKAKSLKDEIS 67
BLAST of NO29G00640 vs. NCBI_GenBank
Match: CEM31116.1 (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 72.4 bits (176), Expect = 1.700e-9 Identity = 54/137 (39.42%), Postives = 73/137 (53.28%), Query Frame = 0 Query: 7 VSILALLVLLFGACADAFLPSITRPASTTTARRLQPHTPSSASSLLVTRPQSSPL----------SSLQQRSRGQPL----YGIFGLGTPELVVIALVAGIVLGPDKIVDLARGVGKAAGELKAVPQEFEKGLKTGE 130 + + + +LL A F+P PAS + RR S AS RP SPL L +R+ G PL G FGLG E+VVI + AG++LGP+K+ AR +GK AGELK VP+EF++G+ GE Sbjct: 10 ICVTWICLLLIAAPVRCFVP----PASVQSLRR------SGASRTPHIRPHPSPLLPPAIDAPLSDELTRRTDGSPLTVRHAGFFGLGPTEIVVIVVAAGLLLGPEKVGKFARDLGKIAGELKEVPKEFQQGISDGE 136
BLAST of NO29G00640 vs. NCBI_GenBank
Match: OEU13217.1 (hypothetical protein FRACYDRAFT_269727 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 64.7 bits (156), Expect = 3.600e-7 Identity = 46/126 (36.51%), Postives = 67/126 (53.17%), Query Frame = 0 Query: 12 LLVLLFGACADAFLPSI-TRPASTTTARRLQPHTPSSASSLLVTRPQSSPLSSLQQRSRGQPLYGIFGLGTPELVVIALVAGIVLGPDKIVDLARGVGKAAGELKAVPQEFEKGLKTGEEAAVKTK 137 L+V A AF PS+ + AR + TPSS+ + + Q ++ +Q G+FGLG PE+ +I + A +LGPDK+ + + GK AGELK VP+EF+ G+ GE A K K Sbjct: 9 LIVSAIVGSASAFAPSLPLKNGGMMAARTID--TPSSSYQPVSLQRQRKSVAQVQ-------TMGLFGLGAPEVGIILVAAAFLLGPDKLAEFGKDAGKIAGELKEVPKEFQAGMAEGEANAKKMK 125
BLAST of NO29G00640 vs. NCBI_GenBank
Match: CBJ27354.1 (Tha4/Hcf106 protein [Ectocarpus siliculosus]) HSP 1 Score: 63.9 bits (154), Expect = 6.100e-7 Identity = 49/138 (35.51%), Postives = 71/138 (51.45%), Query Frame = 0 Query: 9 ILALLVLLFGACADAFLPSIT-RPASTTTARRLQPHTPSSASSLLVTRPQSSPLSSLQQRSR---GQP-------LYGIFGLGTPELVVIALVAGIVLGPDKIVDLARGVGKAAGELKAVPQEFEKGLKTGEEAAVKT 136 +L L A+AF+P++ R + A R +P++A S + Q SR G+P G+FGLG PE+ V VA ++LGPDK+ A+ +GK AGELK VP+EF+ G++ GE KT Sbjct: 7 VLVWACALAARVAEAFVPALAGRAGIMSAAGRQASMSPAAAGRQNAFSHTSYGSPAQAQSSRWLSGRPSSGASTTTMGLFGLGAPEIAVCIAVAALILGPDKMAGFAKDMGKMAGELKDVPKEFQAGVEEGEAKTQKT 144 The following BLAST results are available for this feature:
BLAST of NO29G00640 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 5
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO29G00640 ID=NO29G00640|Name=NO29G00640|organism=Nannochloropsis oceanica|type=gene|length=1350bpback to top protein sequence of NO29G00640.1 >NO29G00640.1-protein ID=NO29G00640.1-protein|Name=NO29G00640.1|organism=Nannochloropsis oceanica|type=polypeptide|length=191bpback to top Synonyms
Publications
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