NO29G00400, NO29G00400 (gene) Nannochloropsis oceanica

Overview
NameNO29G00400
Unique NameNO29G00400
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length992
Alignment locationchr29:161405..162396 +

Link to JBrowse

Properties
Property NameValue
DescriptionRibosomal protein/NADH dehydrogenase domain protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr29genomechr29:161405..162396 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR019716Ribosomal_L53_mit
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Homology
BLAST of NO29G00400 vs. NCBI_GenBank
Match: EWM21265.1 (Ribosomal protein/NADH dehydrogenase domain protein [Nannochloropsis gaditana])

HSP 1 Score: 213.8 bits (543), Expect = 3.000e-52
Identity = 98/119 (82.35%), Postives = 111/119 (93.28%), Query Frame = 0
Query:    1 MGVRPLFRVAKAQSTHLFRFITQVDVSLNPWSDHRLSSTREFWRAISVPRFRKANPKCVINVETHNRKAAPTVAIKYLDGSTQVFEPEHLDVVEMMSDMHQHAHIINAKYEDEGKELDA 120
            MGVRPL RV+KAQ+THLFRFIT V++SLNPWS+ RL+STREFWRAISVPR RKANPKCVINVETHN+K AP VA+KYLDGS+Q FEPE LDVVE+MSD+HQHAH+INAKYEDEGKEL+A
Sbjct:    1 MGVRPLLRVSKAQATHLFRFITHVEISLNPWSEFRLASTREFWRAISVPRLRKANPKCVINVETHNKKVAPMVAVKYLDGSSQTFEPEKLDVVEIMSDIHQHAHVINAKYEDEGKELEA 119          
BLAST of NO29G00400 vs. NCBI_GenBank
Match: OEU16805.1 (hypothetical protein FRACYDRAFT_186261 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 83.2 bits (204), Expect = 6.100e-13
Identity = 41/111 (36.94%), Postives = 61/111 (54.95%), Query Frame = 0
Query:    8 RVAKAQSTHLFRFITQVDVSLNPWSDHRLSSTREFWRAISVPRFRKANPKCVINVETHNRKAAPTVAIKYLDGSTQVFEPEHLDVVEMMSDMHQHAHIINAKYEDEGKELD 119
            +  K  S+ LF+++  VD+  NP+ D+R +S RE WR +   R+ KANPK  IN E     AAP V  K +D + + F+  H    E+  D+H     +N ++E  GK LD
Sbjct:    4 KFTKETSSRLFKYVKTVDIRFNPF-DNRTASAREIWRQMQSTRYYKANPKLKINTEVLGTAAAPEVVFKLIDDTVKRFDSRHYTANEIFFDVHLSLENLNNEFEMSGKSLD 113          
BLAST of NO29G00400 vs. NCBI_GenBank
Match: XP_002290168.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED91920.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 74.7 bits (182), Expect = 2.200e-10
Identity = 40/111 (36.04%), Postives = 65/111 (58.56%), Query Frame = 0
Query:    8 RVAKAQSTHLFRFITQVDVSLNPWSDHRLSSTREFWRAISVPRFRKANPKCVINVETHNRKAAPTVAIKYLDGSTQVFEPEHLDVVEMMSDMHQHAHIINAKYEDEGKELD 119
            +V K  S+HL ++I  VD+S NP+ D R  S RE  R I+V R+R+ANPK  I     +   AP+V   ++DG+ + F+ +     EM+ D+ + A  ++  +E EGK ++
Sbjct:    4 KVTKDMSSHLIKYIRTVDISFNPF-DMRTRSARELLRQINVDRYRRANPKLKIKTNILSTPHAPSVKFAFVDGTDKNFDSKEFLADEMLMDVWRTAMKMDDDFELEGKNVE 113          
BLAST of NO29G00400 vs. NCBI_GenBank
Match: OWZ21508.1 (hypothetical protein PHMEG_0003923 [Phytophthora megakarya])

HSP 1 Score: 63.5 bits (153), Expect = 5.000e-7
Identity = 32/103 (31.07%), Postives = 57/103 (55.34%), Query Frame = 0
Query:   16 HLFRFITQVDVSLNPWSDHRLSSTREFWRAISVPRFRKANPKCVINVETHNRKAAPTVAIKYLDGSTQVFEPEHLDVVEMMSDMHQHAHIINAKYEDEGKELD 119
            ++ RF+   +VS + + D R +   EF+R ++  + RK NPK  IN ET      PT+ + +++GS  V E  + +V E+  ++  H   I  +YE +GK ++
Sbjct:    5 NVVRFLKSANVSFSSF-DRRATGACEFYRQLTAEKTRKMNPKAEINQETTLTGTLPTIKLDFINGSKHVMEVPNKNVREIFEEVDFHCSQIETEYEKQGKSIE 106          
The following BLAST results are available for this feature:
BLAST of NO29G00400 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 4
Match NameE-valueIdentityDescription
EWM21265.13.000e-5282.35Ribosomal protein/NADH dehydrogenase domain protei... [more]
OEU16805.16.100e-1336.94hypothetical protein FRACYDRAFT_186261 [Fragilario... [more]
XP_002290168.12.200e-1036.04predicted protein [Thalassiosira pseudonana CCMP13... [more]
OWZ21508.15.000e-731.07hypothetical protein PHMEG_0003923 [Phytophthora m... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL061nonsL061Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR038ncniR038Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR081ngnoR081Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005138NSK005138Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO29G00400.1NO29G00400.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100538g2gene9159Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO29G00400.1NO29G00400.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO29G00400 ID=NO29G00400|Name=NO29G00400|organism=Nannochloropsis oceanica|type=gene|length=992bp
GCGTCGTACCCTGTCCAAAGGGTTCCAGGTAGATTTTCCAAGCAGGCGCA
ATTTAATCTCTAGAGGCAAAGCAACCTACCACGGATCGCAGCCATATCAC
CCTCATCGTCGTCCATATTTGCTGCCCCTTCGCACCGACTCATTCCTGCG
TCCCCCTCTACACAAGCCTTCAAGCCAGCCGAAGCACAAGCCATGGGAGT
ACGGCCCCTCTTTCGCGTCGCCAAGGCCCAGTCCACCCACCTCTTTCGTT
TCATCACCCAAGTCGACGTCAGgtgtgaatcagaacccttccccatccgt
cttgtttttccttcttctctccgctgcagtgtgtctctatgtgtgtccct
tgcctctggcccatcctatggctccttgcgtcgggctcttacttgctccc
cgtgttgtcatgttgagagaatcctccccactgtgctcacctctccctcc
ctccatccttccccgcagCCTCAACCCTTGGTCAGATCATCGCCTCTCAA
GCACGCGTGAATTCTGGCGCGCAATTTCCGTACCACGCTTTCGAAAAGCC
AATCCCAAGTGTGTGATCAACGTGGAGACACACAACAGGAAGGCGGCCCC
AACAGTAGCGATCAAgtgaggaaggagggaaaaagggagggagggaaaat
gggaacatgggaaaaatcaaattggacagcaggaagggctttaggatttt
aataatttggtgacatgcaccggaagtgtgattttttaatacttggatgc
gtgcgtggaaccacctctatctccaatcccttttaactcacacccctacc
tctctccctccctccccaccctcccccctcagGTACCTTGATGGGAGCAC
TCAGGTCTTCGAACCAGAGCACTTGGACGTGGTGGAGATGATGAGCGACA
TGCACCAACACGCCCACATCATTAATGCGAAGTACGAAGACGAAGGAAAG
GAGCTCGATGCTTAAAGAAAGAAACAATTTTGCTGGGTCCAG
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protein sequence of NO29G00400.1

>NO29G00400.1-protein ID=NO29G00400.1-protein|Name=NO29G00400.1|organism=Nannochloropsis oceanica|type=polypeptide|length=120bp
MGVRPLFRVAKAQSTHLFRFITQVDVSLNPWSDHRLSSTREFWRAISVPR
FRKANPKCVINVETHNRKAAPTVAIKYLDGSTQVFEPEHLDVVEMMSDMH
QHAHIINAKYEDEGKELDA*
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Synonyms
Publications