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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr29 | genome | chr29:80874..85736 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO29G00210.1 vs.
Match: XP_005853398.1 (hypothetical protein NGA_0497210 [Nannochloropsis gaditana CCMP526]; EKU22960.1 hypothetical protein NGA_0497210 [Nannochloropsis gaditana CCMP526]; EWM21226.1 hypothetical protein Naga_100507g1 [Nannochloropsis gaditana]) HSP 1 Score: 169.9 bits (429), Expect = 1.500e-38 Identity = 86/126 (68.25%), Postives = 94/126 (74.60%), Query Frame = 0
Query: 35 QLTEKGGRYESSMRGDGVDASCCDWPPQDYESSVLHVVKEEDKEGDEGDRGGK-RRVVEEKVVLEYEGRRLTLRTLLEEDELAPLFDGAYWPGTMVWPVSLWTAEYIHHTYRKHMRGARVVELGCG 160
Q E GGR S R CDWPPQ YES V+ V+KEE +G G G K VVEEKVV+EYE RRLT RTLLEEDELAPLFDGAYWPGTMVWPVSLWTAEY+H TYR+ ++GARVVELGCG
Sbjct: 27 QAWEGGGREGHSSRPP--QEVTCDWPPQGYESDVIRVIKEEGMDGGAGRDGEKGAMVVEEKVVVEYERRRLTFRTLLEEDELAPLFDGAYWPGTMVWPVSLWTAEYLHRTYRRELKGARVVELGCG 150
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO29G00210.1 ID=NO29G00210.1|Name=NO29G00210.1|organism=Nannochloropsis oceanica|type=mRNA|length=3515bp ACCACAGGATAATGCATACCAAACCAATGATGAGCGAGAACGAGAGCTGC GATATTGACGTCGCTGGCAGCGCCGGTCTGCCTACCGTGCCCCGACAAGC GGAGGAGCACGAGCAACTTACGGAGAAGGGAGGTCGATATGAGAGTAGCA TGCGTGGAGATGGCGTAGATGCCTCCTGCTGTGACTGGCCCCCGCAAGAT TACGAATCGAGCGTCCTCCACGTGGTGAAGGAGGAGGACAAAGAAGGAGA CGAAGGGGATAGAGGAGGGAAGCGGCGTGTGGTGGAGGAGAAAGTGGTGT TGGAGTACGAAGGGAGGCGATTGACTTTGCGGACCCTATTGGAGGAAGAC GAGCTTGCCCCTTTGTTCGATGGCGCCTACTGGCCAGGCACCATGGTCTG GCCTGTATCCTTGTGGACGGCAGAATATATCCATCACACCTACAGGAAAC ATATGAGGGGGGCCAGGGTAGTCGAGCTGGGTTGTGGGTGTGGTGTGCCG GGCATGCTGTGCCACCTGATGGGAGCAGCCTCCGTAGCGCTCACAGAACA ACCAGAGCTGATGCGTATCATCAGACAGAATATAAAGGAGAACTTCGGCG TCGAGGGAGGAAGGGAGAAAAGGCGCGAAGGAGGCACGGCGACGAATGGA AAGGAGGAGAAGAACGGTGCCTGTCGGGGAGAGGAGGCTCACGCAGATCT CTCCCCCCCCTCTTCCCCCCTCATGTCTATCCCTCCATCCTCCACTTCCT CGCTATTCGCGGCCCCTCTCTGGTGGTCTCGAGAGGCGGCTCTTGACCTT CTAGAACAAAACGAATGGCCCGCAGTCGATTTCGCCGTGTGCTGTGATTG CATTTACGCGCCCTTTTGGGGGGAGAGCTACAAGGCCCTTTTGGCGTGCT TCGAAGAATTTTCCGCCCGCAGTCCCTCCACCTGCATCGGCATCATCAGT GTGGAGCGGCGGAATGGGGATGGGGTGGACGATTTCCTGGCCTGTGCTCG AGCAACTATGGAGGTCAAACAGGTACAGCACGACCAGGCCCGGGGGTGGT TTATTTACGAGCTGCGGGCAAAAAGCCTTTAAAAAGAAAGAGAAGGAGGC GGAGGAGTTGTAATGGTAGCACCAGCAGCAGCACCAGAAGTAGCACCAGC AGCACGAGCATTCGCAGCAGCACTACCGTTGGCAGTAGCAAAGGCAGCAG CAGCAGCTGCAGCAATAGCTTCAACAGTACCAGCAGCAACACCAGCAGCA GCTGCAGCAGCTCCGCACTGCCAGCAGCATCCGAAGCAGGAGCAAGCAGA GAAGGAGCAGCAGGAGCAGCAGGAGCACCACCACCAGCAGCAGCAGCAGC AGCAGCACCAGCAGCAGCACCAGCAGCAGCAGCAGCACCAGCAGCACCAT CACCACCACCAGCAGCAGTAGCAGCAGCACCAGTGGCAGAAGCAGCAGCA ACACCAACAGCAGAGGCAGCGGCAGTAGCAGCAGCAGCAATCCCGCCAAC CACCGCCACCGTGGCAGCAGCATTACCAGCGGAAGCAGTAGCAGCAGCAC TGAAGATAGTAGTAGCAGCAGTCGCAGTAGAAAGATTTGACGAAAATTTA ATGGCCAAGGAAAATAGAAGAAAGGAAATAGCACTAGAAAGATGTGTAGA TGGTGGCATCGGAGCAGGATATAGACAAGTGCTTCTTAAGAAGGGGAAAA TAGATTACCATGATCAAGAAAACTATCATCCCCAAAAGTGAAATGAGAGA CAAAGAAAAAGTACGAAATAAAGATTAACCTTAAGGCTGCTTATAGTTCA TCCTTTCTCTTCTTCTTCTTCTCTCCTACGTAATCACGCATTTTCTTCTT CCTACCTGAGGATTAGGTTTGGTCTCTTCTTTTCCTCCTCCTCCTCTCTC CCCCCCTCCTGGTCGCGGTGGTGTGCCTGAAACATGCTAAAAAAAGCCAA GGAAGCCGCTGCCAGTACATGTGTCGTGGAGAAACCATTCAGTGCCGTCG CCGGAGGATGAATCGCTCGGTCGCCACCTTGTTTTTGTGACGGCCATTTC CTACCCATGCACTGTGCTGCCTTCATTACAACGCCGGCCCTTGCCGGGGA AGCTCCCCCACATACACATGATTTCTTTACCTTGACACACGGGGCAGTTG CCTCGTGCTCTTGTTTTCTTCCTTTTATCTTCGTTCTCTTCCTCTACCCC CTCTTCTCTCCACTCCTTTCCCCTGTGCTATTTTCCTTTCTCTGTTTCTC TCCCTCGTCAACCCTCTCCCCTCCAGCAAAAGGGAGGAAGGGGTATGACG GGCGATACAGTACTTGGAATCAACAAACACAAACAAAAAATGCGACTGAA AGAGAGGGAACGGGGAGGAAAGAGGGGGGGAGGATGCACGACCTTACACC ACCACCATCCCCTCCTCCTCCTCCTCCTCCTGCTTCTCTTCTCCATTGAC TTTTCAACCACTCCCATCCACATGCAGATATTTTACATCAGCTGACAAAA ATAGAAACGTACATACACAAAGCGTATCTCTTCCTCCTTCACCGGAAATT CGCACGCACTGACACGCAAGAGTGAAGGTATGCACATTCCCCCGTTCGTG ACAGAGCCACGGATAACCACACAATTAAAAAACGCACATATGGTATAGAG ATATTACGACCCTTCTCCTTCCCATCCCCTAATCCCTTGACTACATAATT TTATGATTAAAATGCTAGCAGAGGCACGGCCGCCATGGCTGCGGTCGCCA GCACCGCCAACACGGACGTATGGATCATTGCCGCACCCGAGTGCATCACC GCCTGCTCGTTGAGCGTCCCGTCCGCCGGCAGCGCATCGTCAATCGGCAG GATCTTGTCTTCTTTCTCCGTCGGCGGGGCAGTTGGAGGGGTGATGTTCG TGGTGGTGGTCTTGCCCCCGCCGCTTGTCGTGTCTGTCGGGTCGACTCCG CTCGTGGGGTTTGTGACGCTCCCCTCCTCTCCCGTCATGGGCGTGGCATC TGTCCCGTCCTTCGCCCCACCGGTAATCATATCCCCGATAGGACCGTTAC CCACCCCTCCCAGGTTAGGCACTCCGGGCAGGTTTCCACCCCCCTGGCCT AAGCCACCTCCGGGTGCCCCGGGAAGCCCCCCCTCTGCAACGGCATCAGG AGGGAGTCCCGTCCCTACCCCGTCCGGGTCGACTATGGGCACACCGTTGG TGGGCGCGGGCGAGCGCGCAGCGGTAGGGGCTCGCGTGGCCTTCGCATCA ACAACCTCGGCGGGGTCAGCAACGGTGCCATCAGTCCGGTCGCCATCCGT CGTCTCCTCTTCGGGCACTTCAACCGCAGCTTCAACCGGAAATTCGGAAA TGACGGCGTCATCCTCCTTGCCCATTACCTCCAACTCCTCCTCATCGTCC ACGTCGTCAACTTGTTCCTCGTCATCGTTGTCGTGCTCCTCGTCGTCGTC GTCGTGCTCCTCGTCATCGTCATTGTGCTCCTCCTTCTCCTCCTCCTCGT CGTCGTCCGCCGCCA back to topprotein sequence of NO29G00210.1 >NO29G00210.1-protein ID=NO29G00210.1-protein|Name=NO29G00210.1|organism=Nannochloropsis oceanica|type=polypeptide|length=357bp MHTKPMMSENESCDIDVAGSAGLPTVPRQAEEHEQLTEKGGRYESSMRGD GVDASCCDWPPQDYESSVLHVVKEEDKEGDEGDRGGKRRVVEEKVVLEYE GRRLTLRTLLEEDELAPLFDGAYWPGTMVWPVSLWTAEYIHHTYRKHMRG ARVVELGCGCGVPGMLCHLMGAASVALTEQPELMRIIRQNIKENFGVEGG REKRREGGTATNGKEEKNGACRGEEAHADLSPPSSPLMSIPPSSTSSLFA APLWWSREAALDLLEQNEWPAVDFAVCCDCIYAPFWGESYKALLACFEEF SARSPSTCIGIISVERRNGDGVDDFLACARATMEVKQVQHDQARGWFIYE LRAKSL* back to topmRNA from alignment at chr29:80874..85736+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO29G00210.1 ID=NO29G00210.1|Name=NO29G00210.1|organism=Nannochloropsis oceanica|type=mRNA|length=4863bp|location=Sequence derived from alignment at chr29:80874..85736+ (Nannochloropsis oceanica) ACCACAGGATAATGCATACCAAACCAATGATGAGCGAGAACGAGAGCTGC
GATATTGACGTCGCTGGCAGCGCCGGTCTGCCTACCGTGCCCCGACAAGC
GGAGGAGCACGAGCAACTTACGGAGAAGGGAGGTCGATATGAGAGTAGCA
TGCGTGGAGATGGCGTAGATGCCTCCTGCTGTGACTGGCCCCCGCAAGAT
TACGAATCGAGCGTCCTCCACGTGGTGAAGGAGGAGGACAAAGAAGGAGA
CGAAGGGGATAGAGGAGGGAAGCGGCGTGTGGTGGAGGAGAAAGTGGTGT
TGGAGTACGAAGGGAGGCGATTGACTTTGCGGACCCTATTGGTAAGTGTC
ACAAAAGGAGGGAGGGAGAAAGGGAAGGAGAAAGCAAAGAAAAGGAGCGC
GTGATAGATGGAGATATGCACGGTATCTGATGGGGGTGGATTGCCTGTTG
TTAGTGTCTAGGATGGGGGGAAGGAGAGAGGGGAGGGTACGAGGTTGGCC
GGCACCCCTCCCCATCCCCCCTTGCTCCCGCCTTCACGCCTTTATTATCG
TCATCATTACCGGATACCTCACACATGTCCATATAGGAGGAAGACGAGCT
TGCCCCTTTGTTCGATGGCGCCTACTGGCCAGGTACTGCCCCTCCCTCCC
TCCCTCCCACCCTCTCTCCTCGCTTCCTTGTTCTCACACATTCTCCATCC
CTCCCTTTCTCCCCTTCACAGGCACCATGGTCTGGCCTGTATCCTTGTGG
ACGGCAGAATATATCCATCACACCTACAGGAAACATATGAGGGGGGCCAG
GGTAGTCGAGCTGGGTTGTGGGTGGTGAGGAAAGGGAGGGAGGGAGGGAG
GGAGGGAGGGATGGGGGGAGGGAGGGTATTGGACCTCATTGTGACTTACT
CTACGGGTGATATGCACAACGACCTTGCCAAGCATTCCCCATCCAAAGCC
TTTACTTATCGATCGCAGTGCATTTGTGTGAGTATTCCTCTCGTCCCTCC
CTCCCTCCCCCTCCCTTCCTCCCTCCCTCCCTCCCCAGTGGTGTGCCGGG
CATGCTGTGCCACCTGATGGGAGCAGCCTCCGTAGCGCTCACAGAACAAC
CAGAGCTGATGCGTATCATCAGACAGAATATAAAGGAGAACTTCGGCGTC
GAGGGAGGAAGGGAGAAAAGGCGCGAAGGAGGCACGGCGACGAATGGAAA
GGAGGAGAAGAACGGTGCCTGTCGGGGAGAGGAGGCTCACGCAGATCTCT
CCCCCCCCTCTTCCCCCCTCATGTCTATCCCTCCATCCTCCACTTCCTCG
CTATTCGCGGCCCCTCTCTGGTGGTCTCGAGAGGCGGCTCTTGACCTTCT
AGAACAAAACGAATGGCCCGCAGTCGATTTCGCCGTGTGCTGTGATTGCA
TTTACGCGCCCTTTTGGGGGGAGAGCTACAAGTAAGGAGAGAGGGACGGA
GGGAGGGAGGGATAATTTTTCCAAGTATTGTTCATCTTCTCCCTTCTTTA
ACTCGTGATTAAAGATGCTCTCTCCTGTGGATGATGTTGTTGCTCTGGTT
GTCATTTTGGTTAGGGATAGAGGGCCCTTGTTGTTGTCTTCCTCTTCCAC
CGCAGGTTAAGACAAAGGATTAATTCCACATCAAGGGTAATGTAATTGTC
TAGCACCGTTATTACACTTATATCATTTTCTTACACTTCCACCACAGGGC
CCTTTTGGCGTGCTTCGAAGAATTTTCCGCCCGCAGTCCCTCCACCTGGT
CAGCTCTCCCTCCCTCCCTTTCTCTTGCCCTCCCTCCCTCCTTTCTCGGC
CCCTTCTTCCCTCCCTGCATTTCTCCTTTCCTCCCTCCTTCCTCCATTTT
CCCCAACAATAGTATCATCAGCATAGAGCGGCGGAATGGGAACCACTACC
CAGTACACTAACTCCTTCTGTTTTCCTCCCCTCCCTCCGTCCTTCCATCC
CCCCATTTCTCCCTACCCTCCGTCCTTTTCCCAAGCATCGGCATCATCAG
TGTGGAGCGGCGGAATGGGGATGGGGTGGACGATTTCCTGGCCTGTGCTC
GAGCAACTATGGAGGTACGTATTACCTTCCCTCATTCCTTCCCTTCCTCC
CTCCCTCTACCCTTTCCTCTTCTATTTGTTTTAGGGGCATTATGGTTCGT
TTGTGTCTACACCTTTTCCTCCACCTTCGTCGCTCCTCCCTCCCTCCCAC
CCTTCCTCCTTCCTTTCCTTCCTCCATTTTCCCTGTTCATGCCTGCTGAA
GCTCCACCAAACGCGGCATGGCCCTCAATCGTTTCTTTTCTCCTCCCTCC
CATCCTTCATTCCCTCTCTCCCTCCCTCCCTCCCTTCCTCCCTCCCCACT
TCATTCCCTAGGTCAAACAGGTACAGCACGACCAGGCCCGGGGGTGGTTT
ATTTACGAGCTGCGGGCAAAAAGCCTTTAAAAAGAAAGAGAAGGAGGCGG
AGGAGTTGTAATGGTAGCACCAGCAGCAGCACCAGAAGTAGCACCAGCAG
CACGAGCATTCGCAGCAGCACTACCGTTGGCAGTAGCAAAGGCAGCAGCA
GCAGCTGCAGCAATAGCTTCAACAGTACCAGCAGCAACACCAGCAGCAGC
TGCAGCAGCTCCGCACTGCCAGCAGCATCCGAAGCAGGAGCAAGCAGAGA
AGGAGCAGCAGGAGCAGCAGGAGCACCACCACCAGCAGCAGCAGCAGCAG
CAGCACCAGCAGCAGCACCAGCAGCAGCAGCAGCACCAGCAGCACCATCA
CCACCACCAGCAGCAGTAGCAGCAGCACCAGTGGCAGAAGCAGCAGCAAC
ACCAACAGCAGAGGCAGCGGCAGTAGCAGCAGCAGCAATCCCGCCAACCA
CCGCCACCGTGGCAGCAGCATTACCAGCGGAAGCAGTAGCAGCAGCACTG
AAGATAGTAGTAGCAGCAGTCGCAGTAGAAAGATTTGACGAAAATTTAAT
GGCCAAGGAAAATAGAAGAAAGGAAATAGCACTAGAAAGATGTGTAGATG
GTGGCATCGGAGCAGGATATAGACAAGTGCTTCTTAAGAAGGGGAAAATA
GATTACCATGATCAAGAAAACTATCATCCCCAAAAGTGAAATGAGAGACA
AAGAAAAAGTACGAAATAAAGATTAACCTTAAGGCTGCTTATAGTTCATC
CTTTCTCTTCTTCTTCTTCTCTCCTACGTAATCACGCATTTTCTTCTTCC
TACCTGAGGATTAGGTTTGGTCTCTTCTTTTCCTCCTCCTCCTCTCTCCC
CCCCTCCTGGTCGCGGTGGTGTGCCTGAAACATGCTAAAAAAAGCCAAGG
AAGCCGCTGCCAGTACATGTGTCGTGGAGAAACCATTCAGTGCCGTCGCC
GGAGGATGAATCGCTCGGTCGCCACCTTGTTTTTGTGACGGCCATTTCCT
ACCCATGCACTGTGCTGCCTTCATTACAACGCCGGCCCTTGCCGGGGAAG
CTCCCCCACATACACATGATTTCTTTACCTTGACACACGGGGCAGTTGCC
TCGTGCTCTTGTTTTCTTCCTTTTATCTTCGTTCTCTTCCTCTACCCCCT
CTTCTCTCCACTCCTTTCCCCTGTGCTATTTTCCTTTCTCTGTTTCTCTC
CCTCGTCAACCCTCTCCCCTCCAGCAAAAGGGAGGAAGGGGTATGACGGG
CGATACAGTACTTGGAATCAACAAACACAAACAAAAAATGCGACTGAAAG
AGAGGGAACGGGGAGGAAAGAGGGGGGGAGGATGCACGACCTTACACCAC
CACCATCCCCTCCTCCTCCTCCTCCTCCTGCTTCTCTTCTCCATTGACTT
TTCAACCACTCCCATCCACATGCAGATATTTTACATCAGCTGACAAAAAT
AGAAACGTACATACACAAAGCGTATCTCTTCCTCCTTCACCGGAAATTCG
CACGCACTGACACGCAAGAGTGAAGGTATGCACATTCCCCCGTTCGTGAC
AGAGCCACGGATAACCACACAATTAAAAAACGCACATATGGTATAGAGAT
ATTACGACCCTTCTCCTTCCCATCCCCTAATCCCTTGACTACATAATTTT
ATGATTAAAATGCTAGCAGAGGCACGGCCGCCATGGCTGCGGTCGCCAGC
ACCGCCAACACGGACGTATGGATCATTGCCGCACCCGAGTGCATCACCGC
CTGCTCGTTGAGCGTCCCGTCCGCCGGCAGCGCATCGTCAATCGGCAGGA
TCTTGTCTTCTTTCTCCGTCGGCGGGGCAGTTGGAGGGGTGATGTTCGTG
GTGGTGGTCTTGCCCCCGCCGCTTGTCGTGTCTGTCGGGTCGACTCCGCT
CGTGGGGTTTGTGACGCTCCCCTCCTCTCCCGTCATGGGCGTGGCATCTG
TCCCGTCCTTCGCCCCACCGGTAATCATATCCCCGATAGGACCGTTACCC
ACCCCTCCCAGGTTAGGCACTCCGGGCAGGTTTCCACCCCCCTGGCCTAA
GCCACCTCCGGGTGCCCCGGGAAGCCCCCCCTCTGCAACGGCATCAGGAG
GGAGTCCCGTCCCTACCCCGTCCGGGTCGACTATGGGCACACCGTTGGTG
GGCGCGGGCGAGCGCGCAGCGGTAGGGGCTCGCGTGGCCTTCGCATCAAC
AACCTCGGCGGGGTCAGCAACGGTGCCATCAGTCCGGTCGCCATCCGTCG
TCTCCTCTTCGGGCACTTCAACCGCAGCTTCAACCGGAAATTCGGAAATG
ACGGCGTCATCCTCCTTGCCCATTACCTCCAACTCCTCCTCATCGTCCAC
GTCGTCAACTTGTTCCTCGTCATCGTTGTCGTGCTCCTCGTCGTCGTCGT
CGTGCTCCTCGTCATCGTCATTGTGCTCCTCCTTCTCCTCCTCCTCGTCG
TCGTCCGCCGCCA back to topCoding sequence (CDS) from alignment at chr29:80874..85736+ >NO29G00210.1 ID=NO29G00210.1|Name=NO29G00210.1|organism=Nannochloropsis oceanica|type=CDS|length=1071bp|location=Sequence derived from alignment at chr29:80874..85736+ (Nannochloropsis oceanica) ATGCATACCAAACCAATGATGAGCGAGAACGAGAGCTGCGATATTGACGT CGCTGGCAGCGCCGGTCTGCCTACCGTGCCCCGACAAGCGGAGGAGCACG AGCAACTTACGGAGAAGGGAGGTCGATATGAGAGTAGCATGCGTGGAGAT GGCGTAGATGCCTCCTGCTGTGACTGGCCCCCGCAAGATTACGAATCGAG CGTCCTCCACGTGGTGAAGGAGGAGGACAAAGAAGGAGACGAAGGGGATA GAGGAGGGAAGCGGCGTGTGGTGGAGGAGAAAGTGGTGTTGGAGTACGAA GGGAGGCGATTGACTTTGCGGACCCTATTGGAGGAAGACGAGCTTGCCCC TTTGTTCGATGGCGCCTACTGGCCAGGCACCATGGTCTGGCCTGTATCCT TGTGGACGGCAGAATATATCCATCACACCTACAGGAAACATATGAGGGGG GCCAGGGTAGTCGAGCTGGGTTGTGGGTGTGGTGTGCCGGGCATGCTGTG CCACCTGATGGGAGCAGCCTCCGTAGCGCTCACAGAACAACCAGAGCTGA TGCGTATCATCAGACAGAATATAAAGGAGAACTTCGGCGTCGAGGGAGGA AGGGAGAAAAGGCGCGAAGGAGGCACGGCGACGAATGGAAAGGAGGAGAA GAACGGTGCCTGTCGGGGAGAGGAGGCTCACGCAGATCTCTCCCCCCCCT CTTCCCCCCTCATGTCTATCCCTCCATCCTCCACTTCCTCGCTATTCGCG GCCCCTCTCTGGTGGTCTCGAGAGGCGGCTCTTGACCTTCTAGAACAAAA CGAATGGCCCGCAGTCGATTTCGCCGTGTGCTGTGATTGCATTTACGCGC CCTTTTGGGGGGAGAGCTACAAGGCCCTTTTGGCGTGCTTCGAAGAATTT TCCGCCCGCAGTCCCTCCACCTGCATCGGCATCATCAGTGTGGAGCGGCG GAATGGGGATGGGGTGGACGATTTCCTGGCCTGTGCTCGAGCAACTATGG AGGTCAAACAGGTACAGCACGACCAGGCCCGGGGGTGGTTTATTTACGAG CTGCGGGCAAAAAGCCTTTAA back to top
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