NO29G00200, NO29G00200 (gene) Nannochloropsis oceanica

Overview
NameNO29G00200
Unique NameNO29G00200
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2005
Alignment locationchr29:78597..80601 +

Link to JBrowse

Properties
Property NameValue
DescriptionTrigger factor
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr29genomechr29:78597..80601 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006457protein folding
GO:0015031protein transport
GO:0009987cellular process
GO:0006810transport
Vocabulary: INTERPRO
TermDefinition
IPR036611Trigger_fac_ribosome-bd_sf
IPR008881Trigger_fac_ribosome-bd_bac
Homology
[Close]
BLAST of NO29G00200 vs. NCBI_GenBank
Match: EWM21225.1 (trigger factor [Nannochloropsis gaditana])

HSP 1 Score: 258.5 bits (659), Expect = 1.700e-65
Identity = 125/170 (73.53%), Postives = 148/170 (87.06%), Query Frame = 0 
Query:   21 FLVPSPIVMPQRRMSSVRAAGLE--IGEILPTLEPTLKVTRVSVEDPAADPPICAYLVEADVHGPDVKRTYNQALKAGTMNANFPGFRKGVMPGHALVGVKLTAITASIMDVCRTAMEMHGLENLPVNERKLRMKVPKTTEELAKTYEMGTDLSFACEIDAIGVPGEPKS 189
            F++ SP+  P +R      + ++  IGEILPTL+PTLKVTRVSVEDP+A+ P+C YLVEA+++GPDVK+TYNQALKAGT+NANFPGFRKGVMP HALVGVKL+A+TASIMD CRTAMEMHGLEN P NERKLRMKVP++TEELAK YE+GTDL+FACEIDAIGVPG+  S
Sbjct:   25 FVLSSPLATPNQRSVVCLRSTIQNVIGEILPTLDPTLKVTRVSVEDPSAEHPVCGYLVEAEIYGPDVKKTYNQALKAGTLNANFPGFRKGVMPPHALVGVKLSAVTASIMDACRTAMEMHGLENFPANERKLRMKVPQSTEELAKQYEIGTDLTFACEIDAIGVPGKATS 194
[Close]
BLAST of NO29G00200 vs. NCBI_GenBank
Match: XP_005853397.1 (trigger factor [Nannochloropsis gaditana CCMP526] >XP_005856190.1 trigger factor [Nannochloropsis gaditana CCMP526] >EKU20170.1 trigger factor [Nannochloropsis gaditana CCMP526] >EKU22959.1 trigger factor [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 258.1 bits (658), Expect = 2.300e-65
Identity = 124/170 (72.94%), Postives = 148/170 (87.06%), Query Frame = 0 
Query:   21 FLVPSPIVMPQRRMSSVRAAGLE--IGEILPTLEPTLKVTRVSVEDPAADPPICAYLVEADVHGPDVKRTYNQALKAGTMNANFPGFRKGVMPGHALVGVKLTAITASIMDVCRTAMEMHGLENLPVNERKLRMKVPKTTEELAKTYEMGTDLSFACEIDAIGVPGEPKS 189
            F++ SP+  P +R      + ++  IGEILPTL+PTLKVTRVSVEDP+A+ P+C YLVEA+++GPDVK+TYNQALKAGT+NANFPGFRKG+MP HALVGVKL+A+TASIMD CRTAMEMHGLEN P NERKLRMKVP++TEELAK YE+GTDL+FACEIDAIGVPG+  S
Sbjct:   25 FVLSSPLATPNQRSVVCLRSTIQNVIGEILPTLDPTLKVTRVSVEDPSAERPVCGYLVEAEIYGPDVKKTYNQALKAGTLNANFPGFRKGIMPPHALVGVKLSAVTASIMDACRTAMEMHGLENFPANERKLRMKVPQSTEELAKQYEIGTDLTFACEIDAIGVPGKATS 194
[Close]
BLAST of NO29G00200 vs. NCBI_GenBank
Match: XP_002293879.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED88888.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 68.9 bits (167), Expect = 1.900e-8
Identity = 36/121 (29.75%), Postives = 71/121 (58.68%), Query Frame = 0 
Query:   53 PTLKVTRVSVEDPAADPPICAYLVEADVHGPDVKRTYNQALKAGTMNANFPGFRKGVMPGHALVGVKLTAITASIMDVCRTAMEMHGLENLPVNERKLRMKVPKTTEELAKTYEMGTDLSF 174
            P  ++  + + + A D  + ++ + A  +G ++K+   Q  K  +  ANFPGFRKG +P +A   + + AI  +++  C  ++E +GLE+L  +E +  + V +  +++ KTY++GTD+ F
Sbjct:   63 PNSRMKDMGLAEGAGD-DVHSFWLRAVANGEEIKKLRMQTEKEASKKANFPGFRKGQIPPYAQPRMTMFAIQEAVIKTCEQSLEAYGLESLQGSEGE--VTVNEDMQQVCKTYKLGTDIEF 180
[Close]
BLAST of NO29G00200 vs. NCBI_GenBank
Match: EJK45670.1 (hypothetical protein THAOC_35700 [Thalassiosira oceanica])

HSP 1 Score: 64.7 bits (156), Expect = 3.700e-7
Identity = 30/92 (32.61%), Postives = 55/92 (59.78%), Query Frame = 0 
Query:   82 GPDVKRTYNQALKAGTMNANFPGFRKGVMPGHALVGVKLTAITASIMDVCRTAMEMHGLENLPVNERKLRMKVPKTTEELAKTYEMGTDLSF 174
            G  +K    Q  K  +  ANFPGFRKG +P +A+  ++  AI  +++  C  ++E +GLE+LP ++    + + +  E++ K Y++G+D+ F
Sbjct:   84 GGKIKSLIQQTEKEASRKANFPGFRKGQIPPYAMPQIRTFAIQEALIKTCEESLEAYGLESLPGSDGS--VTINEKVEDIVKGYKVGSDVEF 173
The following BLAST results are available for this feature:
BLAST of NO29G00200 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 4
Match NameE-valueIdentityDescription
EWM21225.11.700e-6573.53trigger factor [Nannochloropsis gaditana][more]
XP_005853397.12.300e-6572.94trigger factor [Nannochloropsis gaditana CCMP526] ... [more]
XP_002293879.11.900e-829.75predicted protein [Thalassiosira pseudonana CCMP13... [more]
EJK45670.13.700e-732.61hypothetical protein THAOC_35700 [Thalassiosira oc... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL064nonsL064Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR079ncniR079Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR081ngnoR081Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR080ngnoR080Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008399NSK008399Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO29G00200.1NO29G00200.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|353482gene_10444Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100507g2gene9199Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO29G00200.1NO29G00200.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO29G00200 ID=NO29G00200|Name=NO29G00200|organism=Nannochloropsis oceanica|type=gene|length=2005bp
ACAGCCTTTGCCGGTCAACCCTTTCGAGCAAATGTCATCACCATCCGCCC
TCCTCCTCCTGCTGCTGCTTCTCATGGCCTCGACTAGCGCCTTCCTTGTC
CCGTCCCCCATCGTAATGCCCCAGCGACGCATGTCTTCCGTGCGCGCTGC
AGGATTGGAGATAGGCGAGATCCTTCCGACGCTCGAACCTACTCTCAAAG
TCACACGgtatggaacgaaggggggtggagggtaagcgagtgcttgcgaa
agaggaggggcaggggcaaatgacctttacgtcttgtccgcagccatgtg
catggattcggttctgatgagtcacttttacccctctgccctggtcattg
cgatggcaggcccctcatgcagctagagtcggtgggggcgattcgatcct
cacccaaaggggctcttcaccatggtgtttattcgtggctcaaaagacac
gtacagcagacccacactgattatgttgttcgggattgctgaaacagtgt
gttctgtgtgcatctcctttcccccccatccacctcgctctccctctttt
cctccctcccatcatccagCGTCTCGGTGGAAGATCCTGCGGCCGACCCC
CCCATCTGCGCGTATCTGGTGGAAGCTGATGTCCATGGACCGGATGTTAA
AAGAACCTACAACCAAGCGCTGAAAGgtgaggggaaaacagccaggaggg
agggagggagggagggaagaaggaagggcagggaggcgagttccttcgcg
attggagggctgcggagacccgtgcctcaccttccctcccttatttccca
ttcccctaccctccgacccaataacttgacatagCCGGCACGATGAACGC
CAACTTTCCCGGTTTTAGGAAGGGAGTGATGCCCGGCCATGCTTTGGTAG
GGGTGAAGCTCACGGCCATCACAgtacgtgtgtaggacatcgtttacact
ttcttcctttcctccttcctacattttctcaccttcctccatccccccct
cttctcttaccctccttttctctcaattggtgtcccgtgccacttctgtc
cctttgaatggaaaagaatttgtctccttgatatttcgccattctcttct
catggtcgccgcccacgtccctaatgacctgttacttgtagtaatgagtg
ttcagggcccactggtcagcacctcccttccgccccgccgtctctgattt
ctcctgcaaagacatttatcccacttctcttaatgagtctccctccttcc
cttcctccttccctccctcagGCCTCCATTATGGACGTCTGCCGCACAGC
CATGGAAATGCACGGCCTTGAGAACCTTCCTGTGAATGAACGCAAGCTCC
GGATGAAGGTGCCCAAGACCACCGAAGAGCTGGCCAAGgtatatatatag
ctgtcacaccctccctcgttcccttcctctcaccctcccttcctccctcc
gccacgccaccttttagctgtcgtttcatgtgccgtgcacagcgtcaatc
accaagtcttgtccattgtatatccttgtacctatacctgcggagattcc
ctttactcccacgcattctcatccctccgtcactcttatctttaattatc
ctccctcccacctccaatatcccttcctcccttacccttaagACATACGA
GATGGGCACCGACCTTTCATTCGCCTGCGAAATTGACGCGATTGGTGTGC
CAGGAGAGCCAAAATCCGCCCCAGTACCATTATCTGAAGTGTAGAAGTAG
GAGAAGGAGGGGAAAAAGAGGCAGGGAGGTAGGTAGGGAGGTAGGGAGGT
ATGACTTGTGTAAAAAGGAGAGGAAAAAGGGTCGTAGGAAAGGAGGAAGA
AAGATTTCTGAAAAAGAAGCTATTGACAATCAAAGACAAAAAAAATTGCC
TGAGCAAGCTGATTTATGAGATTTGAAGTCAGACTTCATGCTTTGTGGGT
TTGTACTGTCGAATCGTGCCGTAGTGGTGGGGAGTTATAGGAGGGTGGGC
GCGTT
back to top

protein sequence of NO29G00200.1

>NO29G00200.1-protein ID=NO29G00200.1-protein|Name=NO29G00200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=197bp
MSSPSALLLLLLLLMASTSAFLVPSPIVMPQRRMSSVRAAGLEIGEILPT
LEPTLKVTRVSVEDPAADPPICAYLVEADVHGPDVKRTYNQALKAGTMNA
NFPGFRKGVMPGHALVGVKLTAITASIMDVCRTAMEMHGLENLPVNERKL
RMKVPKTTEELAKTYEMGTDLSFACEIDAIGVPGEPKSAPVPLSEV*
back to top
Synonyms
Publications