NO29G00040, NO29G00040 (gene) Nannochloropsis oceanica

Overview
NameNO29G00040
Unique NameNO29G00040
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1543
Alignment locationchr29:13570..15112 +

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Properties
Property NameValue
DescriptionHigh mobility group protein B1-like
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr29genomechr29:13570..15112 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036910HMG_box_dom_sf
IPR009071HMG_box_dom
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Homology
BLAST of NO29G00040 vs. NCBI_GenBank
Match: ACM09402.1 (High mobility group-T protein [Salmo salar])

HSP 1 Score: 72.8 bits (177), Expect = 2.600e-9
Identity = 45/145 (31.03%), Postives = 74/145 (51.03%), Query Frame = 0
Query:  198 AVSQREVSRVCGEEWARLPGSFRAYWEGLAEEDKQRYSKEMRAWDQAGKARDMASVRELEGSRKRKLRDPSAPKRPISAYFAFSKDHRRRLRNVLLAERRENDLEALPPSNADVSRRVSAEWACMTEEEKGPYLAAAEREMERYQ 343
            +V+  E S+ C E W  +    +  +E LA+ DK RY +EMR++               +G +K++ +DP+APKRP SA+F F  D R +++            E    S  DV++++  +W  +T E+K PY   A R  E+Y+
Sbjct:   34 SVNFSEFSKKCSERWRTMSAKEKGKFEDLAKLDKMRYEREMRSYIPP------------KGEKKKRFKDPNAPKRPSSAFFIFCADFRPQVKG-----------ETPGLSIGDVAKKLGEKWNNLTAEDKVPYEKKAARLKEKYE 155          
BLAST of NO29G00040 vs. NCBI_GenBank
Match: AFM88248.1 (high mobility group protein [Callorhinchus milii])

HSP 1 Score: 72.4 bits (176), Expect = 3.400e-9
Identity = 47/145 (32.41%), Postives = 74/145 (51.03%), Query Frame = 0
Query:  198 AVSQREVSRVCGEEWARLPGSFRAYWEGLAEEDKQRYSKEMRAWDQAGKARDMASVRELEGSRKRKLRDPSAPKRPISAYFAFSKDHRRRLRNVLLAERRENDLEALPPSNADVSRRVSAEWACMTEEEKGPYLAAAEREMERYQ 343
            +V   E S+ C E W  +    +  +EGLA+ DK RY +EMR ++              +G +K+K +DP+APKRP SA+F F  DHR R+R            E    S  DV++++   W+ +T ++K PY     +  E+Y+
Sbjct:   35 SVDFSEFSKQCSERWKAMTPKDKGKFEGLAKNDKVRYDREMRNYNPP------------KGDKKKK-KDPNAPKRPPSAFFIFCSDHRPRIRG-----------ENPGISIGDVAKKMGELWSGLTAKDKKPYEERGAQLKEKYE 155          
BLAST of NO29G00040 vs. NCBI_GenBank
Match: NP_001118186.1 (high mobility group-T protein [Oncorhynchus mykiss] >P07746.2 RecName: Full=High mobility group-T protein; Short=HMG-T; AltName: Full=HMG-T1; Short=HMG-1 >CAA26500.1 unnamed protein product [Oncorhynchus mykiss])

HSP 1 Score: 72.4 bits (176), Expect = 3.400e-9
Identity = 45/145 (31.03%), Postives = 74/145 (51.03%), Query Frame = 0
Query:  198 AVSQREVSRVCGEEWARLPGSFRAYWEGLAEEDKQRYSKEMRAWDQAGKARDMASVRELEGSRKRKLRDPSAPKRPISAYFAFSKDHRRRLRNVLLAERRENDLEALPPSNADVSRRVSAEWACMTEEEKGPYLAAAEREMERYQ 343
            +V+  E S+ C E W  +    +  +E LA+ DK RY +EMR++               +G +K++ +DP+APKRP SA+F F  D R +++            E    S  DV++++  +W  +T E+K PY   A R  E+Y+
Sbjct:   34 SVNFSEFSKKCSERWKTMSAKEKGKFEDLAKLDKVRYEREMRSYIPP------------KGEKKKRFKDPNAPKRPSSAFFIFCADFRPQVKG-----------ETPGLSIGDVAKKLGEKWNNLTAEDKVPYEKKASRLKEKYE 155          
BLAST of NO29G00040 vs. NCBI_GenBank
Match: AGY32512.1 (high mobility group box 3 protein [Scyliorhinus canicula])

HSP 1 Score: 72.4 bits (176), Expect = 3.400e-9
Identity = 47/145 (32.41%), Postives = 77/145 (53.10%), Query Frame = 0
Query:  199 VSQREVSRVCGEEWARLPGSFRAYWEGLAEEDKQRYSKEMRAWDQAGKARDMASVRELEGSRKRKLRDPSAPKRPISAYFAFSKDHRRRLRNVLLAERRENDLEALPP--SNADVSRRVSAEWACMTEEEKGPYLAAAEREMERY 342
            V+  + S+ C E W  + G  +  +E LA+ DK RY +EM+ +  A            +GS+K+K +DP+APKRP S +F F  +HR +++             A+ P  S  DV++++   W   TEEEK P+++ A +  E+Y
Sbjct:   36 VNFSDFSKRCSERWKTMSGKEKGKFEDLAKVDKVRYDREMKNYVPA------------KGSKKKK-KDPNAPKRPPSGFFLFCSEHRPKIK-------------AVSPGLSIGDVAKKLGELWNACTEEEKKPFISKAYKLKEKY 154          
BLAST of NO29G00040 vs. NCBI_GenBank
Match: OAJ07658.1 (hypothetical protein A4X13_g328 [Tilletia indica])

HSP 1 Score: 72.4 bits (176), Expect = 3.400e-9
Identity = 49/151 (32.45%), Postives = 81/151 (53.64%), Query Frame = 0
Query:  204 VSRVCGEEWARLPGSFRAYWEGLAEEDKQRYSKEMRAWDQAGKARDM-------ASVRELEGSRKRKLRDPSAPKRPISAYFAFSKDHRRRLRNVLLAERRENDLEALPPSNADVSRRVSAEWACMTEEEKGPYLAAAEREMERYQAAKED 348
            V+R  G+ +A LP S +A ++  ++  K ++ ++M AW  +    D+       A+ R+   SRK  L+DP+APK+P+SAYF F +    R    ++A   E + E    S        +A+W  +TEE+K PYL  AE + +RY+  + D
Sbjct:  419 VAREAGQRYAALPDSAKAEFQRQSQIAKGQWERDMEAWKASLTPEDIKRENLFRAAQRKAGKSRKGNLKDPNAPKKPLSAYFLFLR--AIRANPEMMATVFEGESETTKQSVL-----AAAKWRLLTEEDKRPYLEKAEEDKQRYERLRRD 562          
BLAST of NO29G00040 vs. NCBI_GenBank
Match: XP_008275564.1 (PREDICTED: high mobility group protein B1-like [Stegastes partitus] >XP_008275565.1 PREDICTED: high mobility group protein B1-like [Stegastes partitus])

HSP 1 Score: 72.0 bits (175), Expect = 4.500e-9
Identity = 45/145 (31.03%), Postives = 72/145 (49.66%), Query Frame = 0
Query:  198 AVSQREVSRVCGEEWARLPGSFRAYWEGLAEEDKQRYSKEMRAWDQAGKARDMASVRELEGSRKRKLRDPSAPKRPISAYFAFSKDHRRRLRNVLLAERRENDLEALPPSNADVSRRVSAEWACMTEEEKGPYLAAAEREMERYQ 343
            +V+  E S+ C E W  +    +  +E LA +DK RY +EM ++  A             GS+K+K +DP+APKRP SA+F F  + R ++++           E    S  DV++R+   W     E+K PY   A +  E+Y+
Sbjct:   34 SVNFAEFSKKCSERWKTMSAKEKGKFEDLARQDKARYEREMMSYVPA------------RGSKKKKYKDPNAPKRPPSAFFIFCSEFRPKVKS-----------EHPGQSIGDVAKRLGEMWNSTAAEDKQPYEKKASKLKEKYE 155          
BLAST of NO29G00040 vs. NCBI_GenBank
Match: XP_008316022.1 (PREDICTED: high mobility group protein B2 isoform X2 [Cynoglossus semilaevis] >XP_008316023.1 PREDICTED: high mobility group protein B2 isoform X2 [Cynoglossus semilaevis] >XP_016890380.1 PREDICTED: high mobility group protein B2 isoform X2 [Cynoglossus semilaevis] >XP_016890381.1 PREDICTED: high mobility group protein B2 isoform X2 [Cynoglossus semilaevis])

HSP 1 Score: 72.0 bits (175), Expect = 4.500e-9
Identity = 43/145 (29.66%), Postives = 73/145 (50.34%), Query Frame = 0
Query:  198 AVSQREVSRVCGEEWARLPGSFRAYWEGLAEEDKQRYSKEMRAWDQAGKARDMASVRELEGSRKRKLRDPSAPKRPISAYFAFSKDHRRRLRNVLLAERRENDLEALPPSNADVSRRVSAEWACMTEEEKGPYLAAAEREMERYQ 343
            +V+  E S+ C E W  + G  +  +E LA+ DK RY +EM+ +           V      + +K +DP+APKRP SA+F F  DHR R++            E    S  ++++++   W+  + ++K PY A A +  E+Y+
Sbjct:   34 SVNFSEFSKKCSERWKTMSGKEKGKFEELAKNDKVRYEREMKTY-----------VPPKGAKKGKKKKDPNAPKRPPSAFFVFCSDHRPRIKE-----------EHPGISIGEIAKKLGELWSTQSSKDKAPYEAKAAKLKEKYE 156          
BLAST of NO29G00040 vs. NCBI_GenBank
Match: XP_016890379.1 (PREDICTED: high mobility group protein B2 isoform X1 [Cynoglossus semilaevis])

HSP 1 Score: 72.0 bits (175), Expect = 4.500e-9
Identity = 43/145 (29.66%), Postives = 73/145 (50.34%), Query Frame = 0
Query:  198 AVSQREVSRVCGEEWARLPGSFRAYWEGLAEEDKQRYSKEMRAWDQAGKARDMASVRELEGSRKRKLRDPSAPKRPISAYFAFSKDHRRRLRNVLLAERRENDLEALPPSNADVSRRVSAEWACMTEEEKGPYLAAAEREMERYQ 343
            +V+  E S+ C E W  + G  +  +E LA+ DK RY +EM+ +           V      + +K +DP+APKRP SA+F F  DHR R++            E    S  ++++++   W+  + ++K PY A A +  E+Y+
Sbjct:   39 SVNFSEFSKKCSERWKTMSGKEKGKFEELAKNDKVRYEREMKTY-----------VPPKGAKKGKKKKDPNAPKRPPSAFFVFCSDHRPRIKE-----------EHPGISIGEIAKKLGELWSTQSSKDKAPYEAKAAKLKEKYE 161          
BLAST of NO29G00040 vs. NCBI_GenBank
Match: OAJ11638.1 (hypothetical protein A4X03_g6994 [Tilletia caries])

HSP 1 Score: 71.6 bits (174), Expect = 5.800e-9
Identity = 46/151 (30.46%), Postives = 78/151 (51.66%), Query Frame = 0
Query:  204 VSRVCGEEWARLPGSFRAYWEGLAEEDKQRYSKEMRAWDQAGKARDM-------ASVRELEGSRKRKLRDPSAPKRPISAYFAFSKDHRRRLRNVLLAERRENDLEALPPSNADVSRRVSAEWACMTEEEKGPYLAAAEREMERYQAAKED 348
            V+R  G+ +A LP S +A ++  ++  K ++  +M AW  +    D+       A+ R+   SRK  L+DP+APK+P+SAYF F       LR +    +   D+          S   +A+W  + E++K PYL  AE + ERY+  +++
Sbjct:  414 VAREAGQRYAALPDSAKAEFQRQSQLAKNQWELDMEAWKASLTPEDIKRENLFRAAQRKAGKSRKGNLKDPNAPKKPLSAYFLF-------LRAIRADPKMMTDIFGGEQETTKQSVLAAAKWRLLNEDDKRPYLEKAEEDKERYERLRKE 557          
BLAST of NO29G00040 vs. NCBI_GenBank
Match: pir||S48708 (high-mobility-group-1 protein - trout)

HSP 1 Score: 71.2 bits (173), Expect = 7.600e-9
Identity = 44/145 (30.34%), Postives = 74/145 (51.03%), Query Frame = 0
Query:  198 AVSQREVSRVCGEEWARLPGSFRAYWEGLAEEDKQRYSKEMRAWDQAGKARDMASVRELEGSRKRKLRDPSAPKRPISAYFAFSKDHRRRLRNVLLAERRENDLEALPPSNADVSRRVSAEWACMTEEEKGPYLAAAEREMERYQ 343
            +V+  E S+ C E W  +    +  +E LA+ DK RY +EMR++               +G +K++ +DP+APKRP SA+F F  D R +++            E    S  DV++++  +W  +T E+K PY   A +  E+Y+
Sbjct:   34 SVNFSEFSKKCSERWKTMSAKEKGKFEDLAKLDKVRYEREMRSYIPP------------KGEKKKRFKDPNAPKRPSSAFFIFCADFRPQVKG-----------ETPGLSIGDVAKKLGEKWNNLTAEDKVPYEKKASKLKEKYE 155          
The following BLAST results are available for this feature:
BLAST of NO29G00040 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
ACM09402.12.600e-931.03High mobility group-T protein [Salmo salar][more]
AFM88248.13.400e-932.41high mobility group protein [Callorhinchus milii][more]
NP_001118186.13.400e-931.03high mobility group-T protein [Oncorhynchus mykiss... [more]
AGY32512.13.400e-932.41high mobility group box 3 protein [Scyliorhinus ca... [more]
OAJ07658.13.400e-932.45hypothetical protein A4X13_g328 [Tilletia indica][more]
XP_008275564.14.500e-931.03PREDICTED: high mobility group protein B1-like [St... [more]
XP_008316022.14.500e-929.66PREDICTED: high mobility group protein B2 isoform ... [more]
XP_016890379.14.500e-929.66PREDICTED: high mobility group protein B2 isoform ... [more]
OAJ11638.15.800e-930.46hypothetical protein A4X03_g6994 [Tilletia caries][more]
pir||S487087.600e-930.34high-mobility-group-1 protein - trout[more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL064nonsL064Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR079ncniR079Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR081ngnoR081Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO29G00040.1NO29G00040.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|354287gene_10465Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO29G00040.1NO29G00040.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO29G00040 ID=NO29G00040|Name=NO29G00040|organism=Nannochloropsis oceanica|type=gene|length=1543bp
AAAAACACAGAAGCGAATGCACAATTATGGACAGCCACTACGACGAGCGC
CAGTTTTACTTGCCGCAGCCACCGCCTTTCTCCCTTCCCCCGAAGCATTA
TCTTCCCCTTTCTCCCCCGCCTCATGGCTTGCTCCTCCATAACCAGCAGC
AGCAGCCACATGAGCAGCGCCAGCAGCAGTACGAAAAGAAGCATCTGATG
GCTTCGAAACCGCCACGCCGGCCTCGGAATGCTTACCTTCTCTTCTTCAC
GGCCCGGGGTCCCACCCTCAAGGCAAGACTGACAGCACGACAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
TCGAAGGAGCAGGAGAAAGAGCAGCAGCAGTTCAACGAAGGGACGGGGTT
GGGGATGGGAGGGTCAACTCTTGGGCCAATACACAGGGAGAATCAGAGTG
AGAAAATGAGCGGCAGCAATAGGCAAGGAGGAGGAGCGGGTAGCAAAGGA
AGGGAAGGGGAAGGAGGAGAAGGAGCGAGGACAAGTTTCAATAGCAGGAG
CACCAGTAGTAGCAGCAGGAGCAGCAGCAACAGAAAGAAAAAGAAGCAGA
GCCGCGTAGTGGCAGGTGCGGTGTCGCAGAGGGAGGTGTCTCGCGTTTGT
GGGGAAGAGTGGGCTCGGCTGCCTGGTTCGTTCAGGGCGTACTGGGAAGG
CCTTGCGGAGGAGGACAAACAGAGGTACAGCAAAGAGATGCGCGCCTGGG
ACCAAGCAGgtcagaaaaagagaagggagggaggaagggaaagagaaaag
gcaacgtagtcacctagctaccgcacacacacatacagGCAAGGCGCGGG
ATATGGCTTCGGTTAGGGAGCTAGAGGGAAGTAGGAAGAGGAAGCTAAGA
GACCCGgtacgtcagccgaacgattccttggagtgggaagtcgatttctg
tagctgttacatcttgtcttgcaaagcatgcatccatggctcttgtcctc
cccctcccctcctgtctttcaatctcactccaccgttcaaatgcttcttc
cctcgcgctcgccctccttcctcctttatgacatactcgagccctcgggt
ccgcttgctttgcgtacaagaatgacgaccaccacccaggcaaacgtggc
gcgtaacatttccctccctccctctctccctccctcccccctcttcctca
gTCTGCACCCAAGCGCCCGATTTCCGCATACTTCGCATTTAGCAAAGACC
ACCGGAGGCGTTTGCGTAACGTTCTTCTGGCGGAGCGGCGCGAGAATGAC
CTCGAGGCTCTGCCCCCGTCCAACGCCGACGTGAGTAGGCGGGTGTCAGC
CGAGTGGGCGTGTATGACAGAGGAGGAGAAGGGGCCTTACCTTGCGGCGG
CGGAGAGGGAGATGGAGAGATATCAGGCCGCGAAGGAGGATCAGGAAAGG
AAGAAGAGGGGGCTAGCGGGAAGGGATGAGGAGGAGGAGGAGGAAGAGAA
GGAGGAGGGGGAGGGGGGGGGGGAGGGCAGAGGGGGATATTGA
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protein sequence of NO29G00040.1

>NO29G00040.1-protein ID=NO29G00040.1-protein|Name=NO29G00040.1|organism=Nannochloropsis oceanica|type=polypeptide|length=381bp
MDSHYDERQFYLPQPPPFSLPPKHYLPLSPPPHGLLLHNQQQQPHEQRQQ
QYEKKHLMASKPPRRPRNAYLLFFTARGPTLKARLTARQQQQQQQQQQQQ
QQQQQQQQSKEQEKEQQQFNEGTGLGMGGSTLGPIHRENQSEKMSGSNRQ
GGGAGSKGREGEGGEGARTSFNSRSTSSSSRSSSNRKKKKQSRVVAGAVS
QREVSRVCGEEWARLPGSFRAYWEGLAEEDKQRYSKEMRAWDQAGKARDM
ASVRELEGSRKRKLRDPSAPKRPISAYFAFSKDHRRRLRNVLLAERREND
LEALPPSNADVSRRVSAEWACMTEEEKGPYLAAAEREMERYQAAKEDQER
KKRGLAGRDEEEEEEEKEEGEGGGEGRGGY*
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Synonyms
Publications