NO29G00040, NO29G00040 (gene) Nannochloropsis oceanica
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Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO29G00040 vs. NCBI_GenBank
Match: ACM09402.1 (High mobility group-T protein [Salmo salar]) HSP 1 Score: 72.8 bits (177), Expect = 2.600e-9 Identity = 45/145 (31.03%), Postives = 74/145 (51.03%), Query Frame = 0
Query: 198 AVSQREVSRVCGEEWARLPGSFRAYWEGLAEEDKQRYSKEMRAWDQAGKARDMASVRELEGSRKRKLRDPSAPKRPISAYFAFSKDHRRRLRNVLLAERRENDLEALPPSNADVSRRVSAEWACMTEEEKGPYLAAAEREMERYQ 343
+V+ E S+ C E W + + +E LA+ DK RY +EMR++ +G +K++ +DP+APKRP SA+F F D R +++ E S DV++++ +W +T E+K PY A R E+Y+
Sbjct: 34 SVNFSEFSKKCSERWRTMSAKEKGKFEDLAKLDKMRYEREMRSYIPP------------KGEKKKRFKDPNAPKRPSSAFFIFCADFRPQVKG-----------ETPGLSIGDVAKKLGEKWNNLTAEDKVPYEKKAARLKEKYE 155
BLAST of NO29G00040 vs. NCBI_GenBank
Match: AFM88248.1 (high mobility group protein [Callorhinchus milii]) HSP 1 Score: 72.4 bits (176), Expect = 3.400e-9 Identity = 47/145 (32.41%), Postives = 74/145 (51.03%), Query Frame = 0
Query: 198 AVSQREVSRVCGEEWARLPGSFRAYWEGLAEEDKQRYSKEMRAWDQAGKARDMASVRELEGSRKRKLRDPSAPKRPISAYFAFSKDHRRRLRNVLLAERRENDLEALPPSNADVSRRVSAEWACMTEEEKGPYLAAAEREMERYQ 343
+V E S+ C E W + + +EGLA+ DK RY +EMR ++ +G +K+K +DP+APKRP SA+F F DHR R+R E S DV++++ W+ +T ++K PY + E+Y+
Sbjct: 35 SVDFSEFSKQCSERWKAMTPKDKGKFEGLAKNDKVRYDREMRNYNPP------------KGDKKKK-KDPNAPKRPPSAFFIFCSDHRPRIRG-----------ENPGISIGDVAKKMGELWSGLTAKDKKPYEERGAQLKEKYE 155
BLAST of NO29G00040 vs. NCBI_GenBank
Match: NP_001118186.1 (high mobility group-T protein [Oncorhynchus mykiss] >P07746.2 RecName: Full=High mobility group-T protein; Short=HMG-T; AltName: Full=HMG-T1; Short=HMG-1 >CAA26500.1 unnamed protein product [Oncorhynchus mykiss]) HSP 1 Score: 72.4 bits (176), Expect = 3.400e-9 Identity = 45/145 (31.03%), Postives = 74/145 (51.03%), Query Frame = 0
Query: 198 AVSQREVSRVCGEEWARLPGSFRAYWEGLAEEDKQRYSKEMRAWDQAGKARDMASVRELEGSRKRKLRDPSAPKRPISAYFAFSKDHRRRLRNVLLAERRENDLEALPPSNADVSRRVSAEWACMTEEEKGPYLAAAEREMERYQ 343
+V+ E S+ C E W + + +E LA+ DK RY +EMR++ +G +K++ +DP+APKRP SA+F F D R +++ E S DV++++ +W +T E+K PY A R E+Y+
Sbjct: 34 SVNFSEFSKKCSERWKTMSAKEKGKFEDLAKLDKVRYEREMRSYIPP------------KGEKKKRFKDPNAPKRPSSAFFIFCADFRPQVKG-----------ETPGLSIGDVAKKLGEKWNNLTAEDKVPYEKKASRLKEKYE 155
BLAST of NO29G00040 vs. NCBI_GenBank
Match: AGY32512.1 (high mobility group box 3 protein [Scyliorhinus canicula]) HSP 1 Score: 72.4 bits (176), Expect = 3.400e-9 Identity = 47/145 (32.41%), Postives = 77/145 (53.10%), Query Frame = 0
Query: 199 VSQREVSRVCGEEWARLPGSFRAYWEGLAEEDKQRYSKEMRAWDQAGKARDMASVRELEGSRKRKLRDPSAPKRPISAYFAFSKDHRRRLRNVLLAERRENDLEALPP--SNADVSRRVSAEWACMTEEEKGPYLAAAEREMERY 342
V+ + S+ C E W + G + +E LA+ DK RY +EM+ + A +GS+K+K +DP+APKRP S +F F +HR +++ A+ P S DV++++ W TEEEK P+++ A + E+Y
Sbjct: 36 VNFSDFSKRCSERWKTMSGKEKGKFEDLAKVDKVRYDREMKNYVPA------------KGSKKKK-KDPNAPKRPPSGFFLFCSEHRPKIK-------------AVSPGLSIGDVAKKLGELWNACTEEEKKPFISKAYKLKEKY 154
BLAST of NO29G00040 vs. NCBI_GenBank
Match: OAJ07658.1 (hypothetical protein A4X13_g328 [Tilletia indica]) HSP 1 Score: 72.4 bits (176), Expect = 3.400e-9 Identity = 49/151 (32.45%), Postives = 81/151 (53.64%), Query Frame = 0
Query: 204 VSRVCGEEWARLPGSFRAYWEGLAEEDKQRYSKEMRAWDQAGKARDM-------ASVRELEGSRKRKLRDPSAPKRPISAYFAFSKDHRRRLRNVLLAERRENDLEALPPSNADVSRRVSAEWACMTEEEKGPYLAAAEREMERYQAAKED 348
V+R G+ +A LP S +A ++ ++ K ++ ++M AW + D+ A+ R+ SRK L+DP+APK+P+SAYF F + R ++A E + E S +A+W +TEE+K PYL AE + +RY+ + D
Sbjct: 419 VAREAGQRYAALPDSAKAEFQRQSQIAKGQWERDMEAWKASLTPEDIKRENLFRAAQRKAGKSRKGNLKDPNAPKKPLSAYFLFLR--AIRANPEMMATVFEGESETTKQSVL-----AAAKWRLLTEEDKRPYLEKAEEDKQRYERLRRD 562
BLAST of NO29G00040 vs. NCBI_GenBank
Match: XP_008275564.1 (PREDICTED: high mobility group protein B1-like [Stegastes partitus] >XP_008275565.1 PREDICTED: high mobility group protein B1-like [Stegastes partitus]) HSP 1 Score: 72.0 bits (175), Expect = 4.500e-9 Identity = 45/145 (31.03%), Postives = 72/145 (49.66%), Query Frame = 0
Query: 198 AVSQREVSRVCGEEWARLPGSFRAYWEGLAEEDKQRYSKEMRAWDQAGKARDMASVRELEGSRKRKLRDPSAPKRPISAYFAFSKDHRRRLRNVLLAERRENDLEALPPSNADVSRRVSAEWACMTEEEKGPYLAAAEREMERYQ 343
+V+ E S+ C E W + + +E LA +DK RY +EM ++ A GS+K+K +DP+APKRP SA+F F + R ++++ E S DV++R+ W E+K PY A + E+Y+
Sbjct: 34 SVNFAEFSKKCSERWKTMSAKEKGKFEDLARQDKARYEREMMSYVPA------------RGSKKKKYKDPNAPKRPPSAFFIFCSEFRPKVKS-----------EHPGQSIGDVAKRLGEMWNSTAAEDKQPYEKKASKLKEKYE 155
BLAST of NO29G00040 vs. NCBI_GenBank
Match: XP_008316022.1 (PREDICTED: high mobility group protein B2 isoform X2 [Cynoglossus semilaevis] >XP_008316023.1 PREDICTED: high mobility group protein B2 isoform X2 [Cynoglossus semilaevis] >XP_016890380.1 PREDICTED: high mobility group protein B2 isoform X2 [Cynoglossus semilaevis] >XP_016890381.1 PREDICTED: high mobility group protein B2 isoform X2 [Cynoglossus semilaevis]) HSP 1 Score: 72.0 bits (175), Expect = 4.500e-9 Identity = 43/145 (29.66%), Postives = 73/145 (50.34%), Query Frame = 0
Query: 198 AVSQREVSRVCGEEWARLPGSFRAYWEGLAEEDKQRYSKEMRAWDQAGKARDMASVRELEGSRKRKLRDPSAPKRPISAYFAFSKDHRRRLRNVLLAERRENDLEALPPSNADVSRRVSAEWACMTEEEKGPYLAAAEREMERYQ 343
+V+ E S+ C E W + G + +E LA+ DK RY +EM+ + V + +K +DP+APKRP SA+F F DHR R++ E S ++++++ W+ + ++K PY A A + E+Y+
Sbjct: 34 SVNFSEFSKKCSERWKTMSGKEKGKFEELAKNDKVRYEREMKTY-----------VPPKGAKKGKKKKDPNAPKRPPSAFFVFCSDHRPRIKE-----------EHPGISIGEIAKKLGELWSTQSSKDKAPYEAKAAKLKEKYE 156
BLAST of NO29G00040 vs. NCBI_GenBank
Match: XP_016890379.1 (PREDICTED: high mobility group protein B2 isoform X1 [Cynoglossus semilaevis]) HSP 1 Score: 72.0 bits (175), Expect = 4.500e-9 Identity = 43/145 (29.66%), Postives = 73/145 (50.34%), Query Frame = 0
Query: 198 AVSQREVSRVCGEEWARLPGSFRAYWEGLAEEDKQRYSKEMRAWDQAGKARDMASVRELEGSRKRKLRDPSAPKRPISAYFAFSKDHRRRLRNVLLAERRENDLEALPPSNADVSRRVSAEWACMTEEEKGPYLAAAEREMERYQ 343
+V+ E S+ C E W + G + +E LA+ DK RY +EM+ + V + +K +DP+APKRP SA+F F DHR R++ E S ++++++ W+ + ++K PY A A + E+Y+
Sbjct: 39 SVNFSEFSKKCSERWKTMSGKEKGKFEELAKNDKVRYEREMKTY-----------VPPKGAKKGKKKKDPNAPKRPPSAFFVFCSDHRPRIKE-----------EHPGISIGEIAKKLGELWSTQSSKDKAPYEAKAAKLKEKYE 161
BLAST of NO29G00040 vs. NCBI_GenBank
Match: OAJ11638.1 (hypothetical protein A4X03_g6994 [Tilletia caries]) HSP 1 Score: 71.6 bits (174), Expect = 5.800e-9 Identity = 46/151 (30.46%), Postives = 78/151 (51.66%), Query Frame = 0
Query: 204 VSRVCGEEWARLPGSFRAYWEGLAEEDKQRYSKEMRAWDQAGKARDM-------ASVRELEGSRKRKLRDPSAPKRPISAYFAFSKDHRRRLRNVLLAERRENDLEALPPSNADVSRRVSAEWACMTEEEKGPYLAAAEREMERYQAAKED 348
V+R G+ +A LP S +A ++ ++ K ++ +M AW + D+ A+ R+ SRK L+DP+APK+P+SAYF F LR + + D+ S +A+W + E++K PYL AE + ERY+ +++
Sbjct: 414 VAREAGQRYAALPDSAKAEFQRQSQLAKNQWELDMEAWKASLTPEDIKRENLFRAAQRKAGKSRKGNLKDPNAPKKPLSAYFLF-------LRAIRADPKMMTDIFGGEQETTKQSVLAAAKWRLLNEDDKRPYLEKAEEDKERYERLRKE 557
BLAST of NO29G00040 vs. NCBI_GenBank
Match: pir||S48708 (high-mobility-group-1 protein - trout) HSP 1 Score: 71.2 bits (173), Expect = 7.600e-9 Identity = 44/145 (30.34%), Postives = 74/145 (51.03%), Query Frame = 0
Query: 198 AVSQREVSRVCGEEWARLPGSFRAYWEGLAEEDKQRYSKEMRAWDQAGKARDMASVRELEGSRKRKLRDPSAPKRPISAYFAFSKDHRRRLRNVLLAERRENDLEALPPSNADVSRRVSAEWACMTEEEKGPYLAAAEREMERYQ 343
+V+ E S+ C E W + + +E LA+ DK RY +EMR++ +G +K++ +DP+APKRP SA+F F D R +++ E S DV++++ +W +T E+K PY A + E+Y+
Sbjct: 34 SVNFSEFSKKCSERWKTMSAKEKGKFEDLAKLDKVRYEREMRSYIPP------------KGEKKKRFKDPNAPKRPSSAFFIFCADFRPQVKG-----------ETPGLSIGDVAKKLGEKWNNLTAEDKVPYEKKASKLKEKYE 155 The following BLAST results are available for this feature:
BLAST of NO29G00040 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO29G00040 ID=NO29G00040|Name=NO29G00040|organism=Nannochloropsis oceanica|type=gene|length=1543bpback to top protein sequence of NO29G00040.1 >NO29G00040.1-protein ID=NO29G00040.1-protein|Name=NO29G00040.1|organism=Nannochloropsis oceanica|type=polypeptide|length=381bpback to top Synonyms
Publications
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