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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr28 | genome | chr28:533430..537297 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO28G01710.1 vs.
Match: PSC67712.1 (initiation factor 2B [Micractinium conductrix]) HSP 1 Score: 114.8 bits (286), Expect = 9.300e-22 Identity = 173/617 (28.04%), Postives = 243/617 (39.38%), Query Frame = 0
Query: 26 QPRRPHKQVATAIVRDPKTGLFLALKRSDKVGSFQRHWHFISGGMEMDDDNDVLRRAYTELEEEVQLKREHLCLVAQGRPLLVAIEGRLGNGKILVHPVLFDLVQPYHGPPLDESVLNWENVDIRWMSLEALNGVPVVPRLVETARRTL----------RVEARRQRAAA--AAAAAAAGEGKGGGRGGRGGER--EREWPPAVEEGMEEIVTDRVHGAMTLMSWAVAVLGTWAREGGREGGREEEEWKEEAKDLGWALTRLRPSMTAIESGIAHVLSSALSPSLPPSLPSSFLARLEDEACVTFPLFLKGRKEELKEGGVSLLLSAYDDSKKRGERRTGGREGG----RGLTIMTLSLSSTVMEVMEGFRKRLEEEEEEGREEGGGEVKVIVCESRPLFEGARTVKMLREMGYTDVMLITDAQMGIFAQLANLCLLGADSLLVPPLPPSLPPSLPPSPPMAINKAGSLPLALCCQHFGVSVYVLSSELKIS--------------------SSSHSFSPLAMEAMSREEVTEDCAVGRLLE----------------PFLDGVEISNVYFEGLPLGERERTKGGGGGGGVVTAVVMEGGVCKDVRERAERRKEAFE 589
+P K V TA V+ P +G L + RS KVG+++ W +SGG+E D + + RA E+ EE ++ L L GRPLLV G VHP LF L P + LNWEN +W++ E + + P+L ET R + A R R AA AAAA AA +G+ G P A R G + AV A +GG ++ GW L RPSM A+ + +A VL++A S +F A L E C GV +A + + RG R+ G T+MT+SLSS+V R ++E G +++ I+CE+RPL EG + G + L+TDAQ GIF A+L ++GAD++ + +NKAG+ LAL GV VY + K+S + A +EEV A G +E P G + NVYFE PL T G GG + A GV +R R + + AF+
Sbjct: 11 EPPVRRKHVTTAFVQRPGSGKVLLVLRSHKVGTYRGQWGAVSGGVEAGDAS-LAARAQEEVWEEAGIRPSQLRLERGGRPLLVDD----GRRHFAVHPFLFSLTDPE-----ADVTLNWENDAAQWVAPEQIRSMDTAPQLPETWGRLALTPGQEEALGELAADRSRGAAELAAAAVAALQGEAAALAAAGAHAALAAAGPAARPAAAGGHAGARAAGPAGFAA-EPAVGPAAAAAAPADGGGAA---FTALRNYGWHLAACRPSMAAVANSVAAVLAAAHEEL--HSRADAFEAPL-SEVC-----------------GVVQAAAATELRRLRGAAAAVQRQVAGLLRDGTTVMTISLSSSV-------RDGVKEAAASGM-----KLRAIICEARPLCEGVALAEAWAAAG-VECTLVTDAQAGIFVHQADLVMVGADAV---------------TDQGVVNKAGTRLLALAAHAAGVPVYAAADSGKLSPGTLAALAARGGGFGGVSGGGGGAAGRAAAQVEEGQEEVAAAAARGDAVEGQDEMAGEEVTAAWGRPAPVGATVRNVYFEATPLS--LLTGGLLTEGGPLGA----EGVAAALRGRRRQYRAAFQ 559
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO28G01710.1 ID=NO28G01710.1|Name=NO28G01710.1|organism=Nannochloropsis oceanica|type=mRNA|length=1782bp
ATGTCTGCCACTCCAACTTCCTCGTCTTCCCCGCCGACGACGACCCGCCC
TCCTACCCCTCCTCCTCGACCATCCCAACCGCGACGTCCGCACAAACAAG
TTGCCACAGCCATCGTCCGTGACCCCAAGACCGGCCTCTTCCTCGCCTTG
AAGCGTTCCGACAAGGTAGGCTCCTTTCAGCGGCATTGGCACTTCATTTC
TGGAGGGATGGAAATGGACGATGACAACGATGTCCTCAGGCGGGCTTACA
CAGAGCTCGAAGAAGAGGTTCAGTTGAAGAGAGAGCATCTTTGTCTCGTT
GCTCAAGGCCGCCCTCTGCTGGTGGCGATTGAGGGGAGGCTCGGAAACGG
GAAGATCCTCGTCCATCCCGTGCTCTTCGACCTGGTCCAGCCCTACCATG
GGCCGCCCCTGGACGAGAGCGTGTTAAATTGGGAGAACGTCGACATTCGC
TGGATGTCTCTCGAGGCCCTGAATGGCGTTCCCGTCGTCCCTCGGCTTGT
CGAGACAGCCCGACGGACGCTGCGTGTGGAGGCGCGACGACAACGAGCCG
CCGCCGCGGCAGCAGCAGCAGCAGCAGGGGAAGGGAAAGGAGGAGGAAGA
GGAGGAAGAGGAGGGGAAAGAGAGAGGGAGTGGCCACCAGCAGTGGAGGA
AGGGATGGAGGAGATTGTAACAGACAGGGTGCACGGTGCCATGACGTTAA
TGAGCTGGGCGGTGGCCGTCCTTGGGACATGGGCCAGGGAGGGCGGGAGG
GAAGGGGGGAGGGAGGAGGAGGAGTGGAAGGAGGAAGCGAAAGATCTGGG
GTGGGCCTTGACTAGGCTGAGGCCGTCCATGACGGCCATCGAAAGCGGCA
TCGCCCACGTCCTTTCCTCCGCCCTCTCGCCCTCCCTCCCTCCCTCCCTC
CCTTCTTCCTTCCTAGCGCGTCTAGAAGACGAGGCTTGTGTCACGTTTCC
GTTGTTTTTGAAGGGGAGGAAGGAGGAACTGAAGGAGGGGGGGGTCTCTC
TTCTCCTCTCTGCGTATGACGACTCGAAGAAGAGGGGTGAGAGGAGGACG
GGAGGGAGGGAGGGGGGGAGGGGGCTGACGATTATGACGCTATCGTTGTC
GTCGACTGTGATGGAGGTAATGGAGGGATTCAGAAAGAGGTTGGAGGAGG
AGGAGGAGGAAGGGAGGGAGGAAGGGGGAGGAGAAGTGAAGGTGATCGTC
TGCGAGTCCCGGCCACTTTTTGAAGGCGCTCGCACCGTAAAAATGCTGCG
GGAGATGGGGTATACGGATGTGATGCTCATCACCGACGCACAGATGGGGA
TCTTCGCCCAACTCGCCAACCTTTGCCTACTAGGGGCCGACAGCCTCCTC
GTTCCCCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCGCC
TATGGCCATCAATAAGGCTGGCTCTCTGCCCCTGGCATTGTGCTGTCAAC
ATTTCGGAGTGTCTGTCTACGTCCTCTCAAGCGAGCTCAAGATCTCCTCC
TCCTCGCACTCCTTCTCGCCCTTGGCCATGGAAGCCATGAGTCGAGAGGA
AGTGACAGAAGACTGTGCTGTCGGGAGACTGCTTGAGCCCTTCCTCGATG
GCGTTGAGATATCAAATGTCTACTTCGAGGGTCTTCCTCTGGGAGAGAGA
GAAAGAACGAAAGGAGGAGGGGGAGGAGGAGGAGTGGTGACAGCGGTAGT
AATGGAGGGCGGGGTATGCAAGGACGTTCGAGAAAGGGCCGAGCGGCGGA
AGGAGGCCTTTGAGGCACTCTTCTATGGGTGA back to topprotein sequence of NO28G01710.1 >NO28G01710.1-protein ID=NO28G01710.1-protein|Name=NO28G01710.1|organism=Nannochloropsis oceanica|type=polypeptide|length=594bp
MSATPTSSSSPPTTTRPPTPPPRPSQPRRPHKQVATAIVRDPKTGLFLAL
KRSDKVGSFQRHWHFISGGMEMDDDNDVLRRAYTELEEEVQLKREHLCLV
AQGRPLLVAIEGRLGNGKILVHPVLFDLVQPYHGPPLDESVLNWENVDIR
WMSLEALNGVPVVPRLVETARRTLRVEARRQRAAAAAAAAAAGEGKGGGR
GGRGGEREREWPPAVEEGMEEIVTDRVHGAMTLMSWAVAVLGTWAREGGR
EGGREEEEWKEEAKDLGWALTRLRPSMTAIESGIAHVLSSALSPSLPPSL
PSSFLARLEDEACVTFPLFLKGRKEELKEGGVSLLLSAYDDSKKRGERRT
GGREGGRGLTIMTLSLSSTVMEVMEGFRKRLEEEEEEGREEGGGEVKVIV
CESRPLFEGARTVKMLREMGYTDVMLITDAQMGIFAQLANLCLLGADSLL
VPPLPPSLPPSLPPSPPMAINKAGSLPLALCCQHFGVSVYVLSSELKISS
SSHSFSPLAMEAMSREEVTEDCAVGRLLEPFLDGVEISNVYFEGLPLGER
ERTKGGGGGGGVVTAVVMEGGVCKDVRERAERRKEAFEALFYG* back to topmRNA from alignment at chr28:533430..537297- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO28G01710.1 ID=NO28G01710.1|Name=NO28G01710.1|organism=Nannochloropsis oceanica|type=mRNA|length=3868bp|location=Sequence derived from alignment at chr28:533430..537297- (Nannochloropsis oceanica)
ATGTCTGCCACTCCAACTTCCTCGTCTTCCCCGCCGACGACGACCCGCCC
TCCTACCCCTCCTCCTCGACCATCCCAACCGCGACGTCCGCACAAACAAG
TTGCCACAGCCATCGTCCGTGACCCCAAGACCGGCCTCTTCCTCGCCTTG
AAGCGTTCCGACAGTAAGGAAGGGGAATGGGAGGGAGGGAGGGAAAGAGG
AAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGAGGTTCAAGAAGAAAGAA
TTGATTAGAGGAGGAATGGATCAATGTGTACGTGAAATCAATCAACGCCC
CCTCCAAACACCCCTCTCAACCTTTTCCCTTCCTCCCTCACTTCCAGAGG
TAGGCTCCTTTCAGCGGCATTGGCACTTCATTTCTGGAGGGATGGAAATG
GACGATGACAACGATGTCCTCAGGCGGGCTTACACGTACGTGGCTCTATC
CCCTCCGTCCCTCCCTCCCTCCCCCCCTCTCTCCTGCCTTCAGATGCACA
TGCACTTTGGGTCTTCCTGTCGTTGCTCTTCTCGCTCCCCCTCTCCCTCC
CTCCCTCCCTTCCTTCCTCCCTCCCTCTCTCGTGCTCCCGTTGTCCAACC
CTCGTTCTCGCCCTCCCTCCCTCCCTCCCTCCCCCCCCCTCCATCAGAGA
GCTCGAAGAAGAGGTTCAGTTGAAGAGAGAGCATCTTTGTCTCGTTGCTC
AAGGCCGCCCTCTGCTGGTGGCGATTGAGGGGAGGTAGGGAAGGAAGGGA
GGAGGGTGAGAAGGAGGAAGTGAGTGATTTCTCGCACACACACTCTGTGG
AAGTTATGTAATGTGTTTCTCGTACACACCCTGCAGGCTCGGAAACGGGA
AGATCCTCGTCCATCCCGTGCTCTTCGACCTGGTCCAGGTAGGGAGGGGA
GGGAAGGGAGGGTGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAG
GGAGGGAGGGAGGGAGGGAGGGAGGGAGGTGTTTGATGGGTAGCTACGCT
TTCCCTTTTATGCAAATTCGCAAATGATTTCCTTCATTCCCCTTTTGCTC
TCCCTCCCTCCCGCCCGCCCGCCCTCCCTCCCTCTAGCCCTACCATGGGC
CGCCCCTGGACGAGAGCGTGTTAAATTGGGAGAACGTCGACATTCGCTGG
ATGTCTCTCGAGGCCCTGAATGGTGCGCCCATCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTGCCTCCCTTTCCTTTACCCCCCCTTTCCAGCTTTTT
GATCTCACTGCTGGCACTGCCGGACTTACCTTCTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTTCTCCAGGCGTTCCCGTCGTCCCTCGGCTTGTCGAGAC
AGCCCGACGGACGCTGCGTGTGGAGGCGCGACGACAACGAGCCGCCGCCG
CGGCAGCAGCAGCAGCAGCAGGGGAAGGGAAAGGAGGAGGAAGAGGAGGA
AGAGGAGGGGAAAGAGAGAGGGAGTGGCCACCAGCAGTGGAGGAAGGGAT
GGAGGTACATTCCACGGATTCGTCTCTCAAGTAGCCGCCCTCCCCTCCCT
CCCTCATTTCCCTCCTTTCTTCTCTCCGTTTCAATATTCTCCAATCCCCC
TCGCTCCCTCCCTCCCTCCCTCCCTCCCTCAGGAGATTGTAACAGACAGG
GTGCACGGTGCCATGACGTTAATGAGCTGGGCGGTGGCCGTCCTTGGGAC
ATGGGCCAGGGAGGGCGGGAGGGAAGGGGGGAGGGAGGAGGAGGAGTGGA
AGGAGGAAGCGAAAGATCTGGGGTGGGCCTTGACTAGGCTGAGGCCGGTA
AAGAGGGAGGGAGGGAGGGAGGGAGGGAGGACGGAATCAGGTTCGACGTG
TTTCTTGACGGAAAATCCAAAAAATCTTGTGATGATTCCGTCCTTACCAT
CCTCCCTCCCTCCCTCCCTCCCTCCCGCCCTCCCTCCCTCCTCCTTCCAG
TCCATGACGGCCATCGAAAGCGGCATCGCCCACGTCCTTTCCTCCGCCCT
CTCGCCCTCCCTCCCTCCCTCCCTCCCTTCTTCCTTCCTAGCGCGTCTAG
AAGACGAGGCTTGTGTCACGTTTCCGTTGTTTTTGAAGGGGAGGAAGGAG
GAACTGAAGGAGGGGGGGGTCTCTCTTCTCCTCTCTGCGTATGACGACTC
GAAGAAGAGGGGTGAGAGGAGGACGGGAGGGAGGGAGGGGGGGAGGGGGC
TGACGATTATGACGCTATCGTTGTCGTCGACTGTGATGGAGGTAATGGAG
GGATTCAGAAAGAGGTTGGAGGAGGAGGAGGAGGAAGGGAGGGAGGAAGG
GGGAGGAGAAGTGAAGGTGGTGAGTGGGGAGGGAGGGAGAGAAGGAGGGA
GGGAGAGAGAAATAAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGAT
CAACCTGTGGTCTGTAGCTGAGAAGAGTCACTCAAATTCATCCGTCAATG
GTACACTCACGCCGCAGCCCCTCTCTCCGTCCTTTCCACCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTGTGTCAGATCGTCTGCGAGTCCCGGC
CACTTTTTGAAGGCGCTCGCACCGTAAAAATGCTGCGGGAGATGGGGTAT
ACGGATGTGATGCTCATCACCGACGCACAGGTAGGGAGGGAGGGAGGGAG
GGCAGAATTTCACTTTCACACCGCACACGCAATTCTTACTCTCCTCCCTC
CTCCTCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCAAGATGGGGATCTTCGCCCAACTCGCCAACCTTTGCCTACTAGGGGCC
GACAGCCTCCTCGTTCCCCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCCGCCTATGGCCATCAATAAGGCTGGCTCTCTGCCCCTGGCAT
TGTGCTGTCAACATTTCGGAGTGTCTGTCTACGTCCTCTCAAGCGAGCTC
AAGGTACGTCCCTCTCTCCTTTCAACCCTTCTTCCCTCCTTCCCTCCCTC
CTTCAACGCTCCCCTCCCTTCTTTCCTTTCCTCTTCCCACCCCCCCTCTC
TTCTGCCCTCCCTCCTTCCTCCCTTGGCAGCCACACGGCTTTTTCCTTTT
TCTCCACATCACGACCAAAATGAATCATTGTACCTCCCCGGCCTCCGCCC
AACCGTCCCTCTGTCCCTCCCGCCCTTTCTCCCTCCCTCCCTCTCTGCCT
AGATCTCCTCCTCCTCGCACTCCTTCTCGCCCTTGGCCATGGAAGCCATG
AGTCGAGAGGAAGTGACAGAAGACTGTGCTGTCGGGAGACTGCTTGAGGT
GAGCGAAGGGAGGGAGGGAGGGAGAGAGGGAGGGAGGGATGGGAAATGGA
AGATATACGAAATAGGAAACATATTTTCTCTTTCTTTTTGATTTGTTTTT
AAATGAAAAGGAGCACCGCAACTGAAAATTTTCATCCGTATGTATCGAAG
CCAGACTTTTTCATTTATTCACGTTGGTGTTTCTCGATATGCTCTTTGCC
CCTTCCTCCATCCCCCCTCTCCTCCTTCCCTCCCTCTAGCCCTTCCTCGA
TGGCGTTGAGATATCAAATGTCTACTTCGAGGGTCTTCCTCTGGGAGAGA
GAGAAAGAACGAAAGGAGGAGGGGGAGGAGGAGGAGTGGTGACAGCGGTA
GTAATGGAGGGCGGGGTATGCAAGGACGTTCGAGAAAGGTGAGGGGAAAG
GGAGGATGGATGGAGGGAAGTGGAAAGAGGGGGTTTCAACTTTTAAGGCT
GATACCTAATGAGAGAATAGTGAGAGGACTTGTCCCTTGATAAACGCATA
CACTATCCAAAATAATTTACAGGGCCGAGCGGCGGAAGGAGGCCTTTGAG
GCACTCTTCTATGGGTGA back to topCoding sequence (CDS) from alignment at chr28:533430..537297- >NO28G01710.1 ID=NO28G01710.1|Name=NO28G01710.1|organism=Nannochloropsis oceanica|type=CDS|length=1782bp|location=Sequence derived from alignment at chr28:533430..537297- (Nannochloropsis oceanica)
ATGTCTGCCACTCCAACTTCCTCGTCTTCCCCGCCGACGACGACCCGCCC
TCCTACCCCTCCTCCTCGACCATCCCAACCGCGACGTCCGCACAAACAAG
TTGCCACAGCCATCGTCCGTGACCCCAAGACCGGCCTCTTCCTCGCCTTG
AAGCGTTCCGACAAGGTAGGCTCCTTTCAGCGGCATTGGCACTTCATTTC
TGGAGGGATGGAAATGGACGATGACAACGATGTCCTCAGGCGGGCTTACA
CAGAGCTCGAAGAAGAGGTTCAGTTGAAGAGAGAGCATCTTTGTCTCGTT
GCTCAAGGCCGCCCTCTGCTGGTGGCGATTGAGGGGAGGCTCGGAAACGG
GAAGATCCTCGTCCATCCCGTGCTCTTCGACCTGGTCCAGCCCTACCATG
GGCCGCCCCTGGACGAGAGCGTGTTAAATTGGGAGAACGTCGACATTCGC
TGGATGTCTCTCGAGGCCCTGAATGGCGTTCCCGTCGTCCCTCGGCTTGT
CGAGACAGCCCGACGGACGCTGCGTGTGGAGGCGCGACGACAACGAGCCG
CCGCCGCGGCAGCAGCAGCAGCAGCAGGGGAAGGGAAAGGAGGAGGAAGA
GGAGGAAGAGGAGGGGAAAGAGAGAGGGAGTGGCCACCAGCAGTGGAGGA
AGGGATGGAGGAGATTGTAACAGACAGGGTGCACGGTGCCATGACGTTAA
TGAGCTGGGCGGTGGCCGTCCTTGGGACATGGGCCAGGGAGGGCGGGAGG
GAAGGGGGGAGGGAGGAGGAGGAGTGGAAGGAGGAAGCGAAAGATCTGGG
GTGGGCCTTGACTAGGCTGAGGCCGTCCATGACGGCCATCGAAAGCGGCA
TCGCCCACGTCCTTTCCTCCGCCCTCTCGCCCTCCCTCCCTCCCTCCCTC
CCTTCTTCCTTCCTAGCGCGTCTAGAAGACGAGGCTTGTGTCACGTTTCC
GTTGTTTTTGAAGGGGAGGAAGGAGGAACTGAAGGAGGGGGGGGTCTCTC
TTCTCCTCTCTGCGTATGACGACTCGAAGAAGAGGGGTGAGAGGAGGACG
GGAGGGAGGGAGGGGGGGAGGGGGCTGACGATTATGACGCTATCGTTGTC
GTCGACTGTGATGGAGGTAATGGAGGGATTCAGAAAGAGGTTGGAGGAGG
AGGAGGAGGAAGGGAGGGAGGAAGGGGGAGGAGAAGTGAAGGTGATCGTC
TGCGAGTCCCGGCCACTTTTTGAAGGCGCTCGCACCGTAAAAATGCTGCG
GGAGATGGGGTATACGGATGTGATGCTCATCACCGACGCACAGATGGGGA
TCTTCGCCCAACTCGCCAACCTTTGCCTACTAGGGGCCGACAGCCTCCTC
GTTCCCCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCGCC
TATGGCCATCAATAAGGCTGGCTCTCTGCCCCTGGCATTGTGCTGTCAAC
ATTTCGGAGTGTCTGTCTACGTCCTCTCAAGCGAGCTCAAGATCTCCTCC
TCCTCGCACTCCTTCTCGCCCTTGGCCATGGAAGCCATGAGTCGAGAGGA
AGTGACAGAAGACTGTGCTGTCGGGAGACTGCTTGAGCCCTTCCTCGATG
GCGTTGAGATATCAAATGTCTACTTCGAGGGTCTTCCTCTGGGAGAGAGA
GAAAGAACGAAAGGAGGAGGGGGAGGAGGAGGAGTGGTGACAGCGGTAGT
AATGGAGGGCGGGGTATGCAAGGACGTTCGAGAAAGGGCCGAGCGGCGGA
AGGAGGCCTTTGAGGCACTCTTCTATGGGTGA back to top
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