NO28G01680.1, NO28G01680.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO28G01680.1
Unique NameNO28G01680.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length596
Alignment locationchr28:525220..526261 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:525220..526261 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO28G01680.1 vs.
Match: XP_005855067.1 (5 deoxy cytosolic type c protein domain containing protein [Nannochloropsis gaditana CCMP526]; EKU21290.1 5 deoxy cytosolic type c protein domain containing protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 166.8 bits (421), Expect = 6.300e-38
Identity = 77/114 (67.54%), Postives = 90/114 (78.95%), Query Frame = 0 
Query:   56 QFRIQPETEKWIEKHYPDIFTALHYGNHYATSGTQHSKAEMCQAIGARLLIDDSLRYALQVATEAGIEVLLFGDYAWNQPDSSLHPSLLPPLVTRVTHWDAVKERIEAMHDEHR 170
            QF IQ ETE+W++KHYP IFT LHYGNHY+ +G Q SK +MCQAI A+LL+DDSLRYA QVA +AGI VLLFGDYAWNQ D SL PS LPP +TRVT W+ V+  IEA+   HR
Sbjct:   73 QFCIQRETEEWVQKHYPGIFTGLHYGNHYSATGPQRSKGDMCQAIKAQLLVDDSLRYAHQVAQDAGIPVLLFGDYAWNQADPSLPPSSLPPSITRVTRWEDVRVHIEALLASHR 186
The following BLAST results are available for this feature:
BLAST of NO28G01680.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855067.16.300e-3867.545 deoxy cytosolic type c protein domain containing... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO28G01680NO28G01680Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO28G01680.1NO28G01680.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO28G01680.1.cds1NO28G01680.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G01680.1.cds2NO28G01680.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G01680.1.cds3NO28G01680.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G01680.1.cds4NO28G01680.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO28G01680.1 ID=NO28G01680.1|Name=NO28G01680.1|organism=Nannochloropsis oceanica|type=mRNA|length=596bp
AAGAAAGACGGAAAGCAACGAGCATCACCCTTGTCTTTATCTGATGAGAA
ATGGGGAGAGAGGAGAAAGTGGATAAATGGTCGACTAAAGCGGCAGCACC
TTTCATTTCTATGGTCCATACATTACAGGAGGAGCTGCCCCCCGTCCCCG
GAGCATACCAAATCCTTTTGGATCTGAAGCGCAAAGGCATTGATTTCCAC
CTCGTCACCTCCCGGCAGTTCCGAATCCAACCCGAAACCGAAAAATGGAT
CGAGAAACACTACCCGGATATATTCACGGCCCTTCACTACGGCAACCACT
ACGCCACCTCAGGAACCCAGCATTCCAAGGCAGAAATGTGCCAAGCCATC
GGCGCCCGCCTACTCATCGACGACTCGCTTCGATACGCTCTCCAAGTCGC
TACAGAAGCAGGAATTGAAGTCCTCCTTTTCGGCGACTACGCATGGAACC
AGCCCGACTCCTCCCTCCACCCCTCCCTCTTGCCCCCCCTCGTCACGCGG
GTCACCCATTGGGATGCCGTTAAAGAGCGCATAGAAGCAATGCACGATGA
GCACCGTTCACTACTGCTGCTGCAGCAGCAGCAGCAGCAGCAATAG
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protein sequence of NO28G01680.1

>NO28G01680.1-protein ID=NO28G01680.1-protein|Name=NO28G01680.1|organism=Nannochloropsis oceanica|type=polypeptide|length=182bp
MGREEKVDKWSTKAAAPFISMVHTLQEELPPVPGAYQILLDLKRKGIDFH
LVTSRQFRIQPETEKWIEKHYPDIFTALHYGNHYATSGTQHSKAEMCQAI
GARLLIDDSLRYALQVATEAGIEVLLFGDYAWNQPDSSLHPSLLPPLVTR
VTHWDAVKERIEAMHDEHRSLLLLQQQQQQQ*
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mRNA from alignment at chr28:525220..526261-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO28G01680.1 ID=NO28G01680.1|Name=NO28G01680.1|organism=Nannochloropsis oceanica|type=mRNA|length=1042bp|location=Sequence derived from alignment at chr28:525220..526261- (Nannochloropsis oceanica)
AAGAAAGACGGAAAGCAACGAGCATCACCCTTGTCTTTATCTGATGAGAA
ATGGGGAGAGAGGAGAAAGTGGATAAATGGTCGACTAAAGCGGCAGCACC
TTTCATTTCTATGGTCCATACATTACAGGAGGAGCTGCCCCCCGTCCCCG
GAGCATACCAAATCCTTTTGGATCTGAAGCGCAAAGGTAAGCATCCGCCC
TCCCTCCCGTCCTCCCTCCCGCCCTCCCACCCTCCCTCCCTTCTCTTTCT
CTACTCATCTATTGCTTCCTCATCCGCCCCCTTACCCCCCCTTTCTCCTA
CAGGCATTGATTTCCACCTCGTCACCTCCCGGCAGTTCCGAATCCAACCC
GAAACCGAAAAATGGATCGAGAAACACTACCCGGATATATTCACGGCCCT
TCACTACGGCAACCACTACGCCAGTACGCCCCTTCCTCCCTCTCTCCCTC
CCTTCATTTCTTCCTCCCTTGAGCCCACGGCACCCTCACAGGCGACATGT
TCTTTCACGATCATCACCTTTGTCTCTCCCGATTCTTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCAGCCTCAGGAACCCAGCATTCCAAGGCAGAAAT
GTGCCAAGCCATCGGCGCCCGCCTACTCATCGACGACTCGCTTCGATACG
CTCTCCAAGTCGCTACAGAAGCAGGAATTGAAGTCCTCCTTTTCGGTACG
TCCCTCCCTCCCTCCCTCCCTCCAGCCCTCCTTCTCTTCAACATGTCTCC
ATCCGCCTCTTCGTTTCTCGAACTGGGCCCCTACTTGTACATCCCTTTCG
ACAAGCACCTTCCCTCCGTCCCTCCCTACCCCCCTCCCTCCCTCCATCCC
TCCCTCCCTGACTCCTCTTTCTTCGCAGGCGACTACGCATGGAACCAGCC
CGACTCCTCCCTCCACCCCTCCCTCTTGCCCCCCCTCGTCACGCGGGTCA
CCCATTGGGATGCCGTTAAAGAGCGCATAGAAGCAATGCACGATGAGCAC
CGTTCACTACTGCTGCTGCAGCAGCAGCAGCAGCAGCAATAG
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Coding sequence (CDS) from alignment at chr28:525220..526261-

>NO28G01680.1 ID=NO28G01680.1|Name=NO28G01680.1|organism=Nannochloropsis oceanica|type=CDS|length=546bp|location=Sequence derived from alignment at chr28:525220..526261- (Nannochloropsis oceanica)
ATGGGGAGAGAGGAGAAAGTGGATAAATGGTCGACTAAAGCGGCAGCACC
TTTCATTTCTATGGTCCATACATTACAGGAGGAGCTGCCCCCCGTCCCCG
GAGCATACCAAATCCTTTTGGATCTGAAGCGCAAAGGCATTGATTTCCAC
CTCGTCACCTCCCGGCAGTTCCGAATCCAACCCGAAACCGAAAAATGGAT
CGAGAAACACTACCCGGATATATTCACGGCCCTTCACTACGGCAACCACT
ACGCCACCTCAGGAACCCAGCATTCCAAGGCAGAAATGTGCCAAGCCATC
GGCGCCCGCCTACTCATCGACGACTCGCTTCGATACGCTCTCCAAGTCGC
TACAGAAGCAGGAATTGAAGTCCTCCTTTTCGGCGACTACGCATGGAACC
AGCCCGACTCCTCCCTCCACCCCTCCCTCTTGCCCCCCCTCGTCACGCGG
GTCACCCATTGGGATGCCGTTAAAGAGCGCATAGAAGCAATGCACGATGA
GCACCGTTCACTACTGCTGCTGCAGCAGCAGCAGCAGCAGCAATAG
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Synonyms
Publications