NO28G01680, NO28G01680 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO28G01680
Unique Name	NO28G01680
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1042
Alignment location	chr28:525220..526261 -

Link to JBrowse

Properties


Property Name	Value
Description	5 deoxy cytosolic type c protein domain containing protein

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr28	genome	chr28:525220..526261 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
PRJNA769958	2024-08-13
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR036412	HAD-like_sf

Homology

[Close]

BLAST of NO28G01680 vs. NCBI_GenBank
Match: XP_005855067.1 (5 deoxy cytosolic type c protein domain containing protein [Nannochloropsis gaditana CCMP526] >EKU21290.1 5 deoxy cytosolic type c protein domain containing protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 167.2 bits (422), Expect = 4.900e-38
Identity = 77/114 (67.54%), Postives = 90/114 (78.95%), Query Frame = 0

Query:   56 QFRIQPETEKWIEKHYPDIFTALHYGNHYATSGTQHSKAEMCQAIGARLLIDDSLRYALQVATEAGIEVLLFGDYAWNQPDSSLHPSLLPPLVTRVTHWDAVKERIEAMHDEHR 170
            QF IQ ETE+W++KHYP IFT LHYGNHY+ +G Q SK +MCQAI A+LL+DDSLRYA QVA +AGI VLLFGDYAWNQ D SL PS LPP +TRVT W+ V+  IEA+   HR
Sbjct:   73 QFCIQRETEEWVQKHYPGIFTGLHYGNHYSATGPQRSKGDMCQAIKAQLLVDDSLRYAHQVAQDAGIPVLLFGDYAWNQADPSLPPSSLPPSITRVTRWEDVRVHIEALLASHR 186

[Close]

BLAST of NO28G01680 vs. NCBI_GenBank
Match: CBJ32884.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 124.8 bits (312), Expect = 2.800e-25
Identity = 61/138 (44.20%), Postives = 88/138 (63.77%), Query Frame = 0

Query:   29 LPPVPGAYQILLDLKRKGIDFHLVTSRQFRIQPETEKWIEKHYPDIFTALHYGNHYATSGTQHSKAEMCQAIGARLLIDDSLRYALQVATEAGIEVLLFGDYAWNQPDSSLHPSLLPPLVTRVTHWDAVKERIEAMHD 167
            +PP+ GA ++L    R  + F+LVTSRQ  +Q  T++WI+ HYP IF  L +GNH++T G   SK ++C+ IGA ++IDD+ +YA + A+ AGI  LLFGDYAWN+ D       LP  V RV  W  V   ++++ D
Sbjct:   14 IPPLAGAAEVLRKHSRT-LTFYLVTSRQDSLQAHTKRWIDAHYPGIFAGLRFGNHFSTEGAVRSKPDLCRMIGAEMIIDDNTKYATECAS-AGIRTLLFGDYAWNRTDGP-----LPANVLRVPTWAEVDAELQSIVD 144

[Close]

BLAST of NO28G01680 vs. NCBI_GenBank
Match: XP_022147633.1 (uncharacterized protein LOC111016509 [Momordica charantia] >XP_022147634.1 uncharacterized protein LOC111016509 [Momordica charantia])

HSP 1 Score: 124.4 bits (311), Expect = 3.600e-25
Identity = 64/131 (48.85%), Postives = 88/131 (67.18%), Query Frame = 0

Query:   31 PVPGAYQILLDLKRKGIDFHLVTSRQFRIQPETEKWIEKHYPDIFTALHYGNHYATSGTQHSKAEMCQAIGARLLIDDSLRYALQVATEAGIEVLLFGDYAWNQPDSSLHPSLLPPLVTRVTHWDAVKERI 162
            P+PGA   LL L R      +VTSRQ  I+  T +WIEKHYP +F  +H+GNH+A  G   SKAE+C+++GA +LIDD+ RYA++ A EAGI VLLF DY  + P        LPPLVT+V +W+ V++++
Sbjct:  207 PIPGAQSTLLKLSR-FCHLSVVTSRQNAIKDHTLEWIEKHYPGLFQEIHFGNHFALDGESRSKAEICKSLGASVLIDDNPRYAIECA-EAGIRVLLF-DYENSYPWCKTESEDLPPLVTKVQNWEDVEKQL 334

[Close]

BLAST of NO28G01680 vs. NCBI_GenBank
Match: XP_008450982.1 (PREDICTED: uncharacterized protein LOC103492406 isoform X1 [Cucumis melo] >XP_008450983.1 PREDICTED: uncharacterized protein LOC103492406 isoform X1 [Cucumis melo])

HSP 1 Score: 123.6 bits (309), Expect = 6.200e-25
Identity = 64/131 (48.85%), Postives = 87/131 (66.41%), Query Frame = 0

Query:   31 PVPGAYQILLDLKRKGIDFHLVTSRQFRIQPETEKWIEKHYPDIFTALHYGNHYATSGTQHSKAEMCQAIGARLLIDDSLRYALQVATEAGIEVLLFGDYAWNQPDSSLHPSLLPPLVTRVTHWDAVKERI 162
            P+PGA   LL L R      +VTSRQ  I+  T +WIEKHYP +F  +H+GNH+A  G   SKAE+C+++GA +LIDD+ RYA++ A EAGI VLLF DY  + P        LPPLVT+V +W+ V++ +
Sbjct:  196 PIPGAQSTLLKLSR-FCHLSVVTSRQNAIKEHTLEWIEKHYPGLFQEIHFGNHFALDGESRSKAEICKSLGASVLIDDNPRYAIECA-EAGIRVLLF-DYENSYPWCKTECGNLPPLVTKVHNWEEVEKHL 323

[Close]

BLAST of NO28G01680 vs. NCBI_GenBank
Match: XP_008450985.1 (PREDICTED: uncharacterized protein LOC103492406 isoform X2 [Cucumis melo])

HSP 1 Score: 123.6 bits (309), Expect = 6.200e-25
Identity = 64/131 (48.85%), Postives = 87/131 (66.41%), Query Frame = 0

Query:   31 PVPGAYQILLDLKRKGIDFHLVTSRQFRIQPETEKWIEKHYPDIFTALHYGNHYATSGTQHSKAEMCQAIGARLLIDDSLRYALQVATEAGIEVLLFGDYAWNQPDSSLHPSLLPPLVTRVTHWDAVKERI 162
            P+PGA   LL L R      +VTSRQ  I+  T +WIEKHYP +F  +H+GNH+A  G   SKAE+C+++GA +LIDD+ RYA++ A EAGI VLLF DY  + P        LPPLVT+V +W+ V++ +
Sbjct:  191 PIPGAQSTLLKLSR-FCHLSVVTSRQNAIKEHTLEWIEKHYPGLFQEIHFGNHFALDGESRSKAEICKSLGASVLIDDNPRYAIECA-EAGIRVLLF-DYENSYPWCKTECGNLPPLVTKVHNWEEVEKHL 318

[Close]

BLAST of NO28G01680 vs. NCBI_GenBank
Match: XP_023531751.1 (uncharacterized protein LOC111793912 [Cucurbita pepo subsp. pepo] >XP_023531752.1 uncharacterized protein LOC111793912 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 122.5 bits (306), Expect = 1.400e-24
Identity = 62/134 (46.27%), Postives = 89/134 (66.42%), Query Frame = 0

Query:   31 PVPGAYQILLDLKRKGIDFHLVTSRQFRIQPETEKWIEKHYPDIFTALHYGNHYATSGTQHSKAEMCQAIGARLLIDDSLRYALQVATEAGIEVLLFGDYAWNQPDSSLHPSLLPPLVTRVTHWDAVKERIEAM 165
            P+PGA   LL L R      +VTSRQ  I+  T +WIEKH+P +F  +H+GNH+A  G   SK E+C+++GA +LIDD+ RYA++ A EAGI VLLF DY  + P        LPPLVT+V +W+ V++++ ++
Sbjct:  196 PIPGAQSTLLKLSR-FCHLSVVTSRQNAIKEHTLEWIEKHFPGLFQEIHFGNHFALDGVSRSKEEICKSVGATVLIDDNPRYAIECA-EAGIRVLLF-DYENSYPWCKTETEDLPPLVTKVYNWEDVEKQLTSL 326

[Close]

BLAST of NO28G01680 vs. NCBI_GenBank
Match: XP_022967795.1 (uncharacterized protein LOC111467200 [Cucurbita maxima])

HSP 1 Score: 122.1 bits (305), Expect = 1.800e-24
Identity = 62/134 (46.27%), Postives = 89/134 (66.42%), Query Frame = 0

Query:   31 PVPGAYQILLDLKRKGIDFHLVTSRQFRIQPETEKWIEKHYPDIFTALHYGNHYATSGTQHSKAEMCQAIGARLLIDDSLRYALQVATEAGIEVLLFGDYAWNQPDSSLHPSLLPPLVTRVTHWDAVKERIEAM 165
            P+PGA   LL L R      +VTSRQ  I+  T +WIEKH+P +F  +H+GNH+A  G   SK E+C+++GA +LIDD+ RYA++ A EAGI VLLF DY  + P        LPPLVT+V +W+ V++++ ++
Sbjct:  196 PIPGAQSTLLKLSR-FCHLSVVTSRQNAIKEHTLEWIEKHFPGLFQEIHFGNHFALDGVSRSKEEICKSLGATVLIDDNPRYAIECA-EAGIRVLLF-DYENSYPWCKTETEDLPPLVTKVYNWEDVEKQLTSL 326

[Close]

BLAST of NO28G01680 vs. NCBI_GenBank
Match: XP_022987939.1 (uncharacterized protein LOC111485341 [Cucurbita maxima])

HSP 1 Score: 120.2 bits (300), Expect = 6.800e-24
Identity = 63/136 (46.32%), Postives = 90/136 (66.18%), Query Frame = 0

Query:   26 QEELPPVPGAYQILLDLKRKGIDFHLVTSRQFRIQPETEKWIEKHYPDIFTALHYGNHYATSGTQHSKAEMCQAIGARLLIDDSLRYALQVATEAGIEVLLFGDYAWNQPDSSLHPSLLPPLVTRVTHWDAVKERI 162
            Q  + P+PGA  +LL L R      +VTSRQ  I+  T KWI++HYP +F  +H+GNH+A  G   SKAE+C+++GA +LIDD+ RYA++ A EAGI VLLF DY  + P        LP LVT+V +W+ V++++
Sbjct:  178 QSGIWPIPGAQSMLLKLSR-FCHLSVVTSRQNAIKEHTLKWIDRHYPGLFQEIHFGNHFALDGESRSKAEICKSLGASVLIDDNPRYAIECA-EAGIRVLLF-DYENSYPWCKTGYEDLPALVTKVHNWEDVEQQL 310

[Close]

BLAST of NO28G01680 vs. NCBI_GenBank
Match: XP_011660045.1 (PREDICTED: uncharacterized protein LOC101215456 [Cucumis sativus] >KGN66338.1 hypothetical protein Csa_1G598340 [Cucumis sativus])

HSP 1 Score: 119.8 bits (299), Expect = 8.900e-24
Identity = 63/131 (48.09%), Postives = 86/131 (65.65%), Query Frame = 0

Query:   31 PVPGAYQILLDLKRKGIDFHLVTSRQFRIQPETEKWIEKHYPDIFTALHYGNHYATSGTQHSKAEMCQAIGARLLIDDSLRYALQVATEAGIEVLLFGDYAWNQPDSSLHPSLLPPLVTRVTHWDAVKERI 162
            P+PGA   LL L R      +VTSRQ  I+  T +WIEKHY  +F  +H+GNH+A  G   SKAE+C++ GA +LIDD+ RYA++ A EAGI VLLF DY  + P        LPPLVT+V +W+ V++++
Sbjct:  214 PIPGAQSTLLKLSR-FCHLSVVTSRQNAIKEHTLEWIEKHYQGLFQEIHFGNHFALDGESRSKAEICKSFGASVLIDDNPRYAIECA-EAGIRVLLF-DYENSYPWCKTECGDLPPLVTKVHNWEEVEKQL 341

[Close]

BLAST of NO28G01680 vs. NCBI_GenBank
Match: XP_004998042.1 (hypothetical protein PTSG_11828 [Salpingoeca rosetta] >EGD79086.1 hypothetical protein PTSG_11828 [Salpingoeca rosetta])

HSP 1 Score: 119.4 bits (298), Expect = 1.200e-23
Identity = 66/154 (42.86%), Postives = 90/154 (58.44%), Query Frame = 0

Query:   11 STKAAAPFISMVHTLQEELPPVPGAYQILLDLKRKGIDFHLVTSRQFRIQPETEKWIEKHYPDIFTALHYGNHYATSGTQHSKAEMCQAIGARLLIDDSLRYALQVATEAGIEVLLFGDYAWNQPDSSLHPSLLPPLVTRVTHWDAVKERIEAM 165
            S+K    F+   H  +  L  VPGA + L  L  K  D  +VTSRQ  I PET +W+E H+P+ F ++ +GNH+   G + SK EMC AIGA +LIDD+L YA + A     +VLLFG+Y+WN  D     + LP  V RV  WDAV   ++ +
Sbjct:   64 SSKKVHDFLESKH-FKNGLRLVPGAQEALAKLAEK-YDLVIVTSRQHIIAPETHEWVETHFPNTFKSILFGNHWGLHGEKKSKPEMCTAIGAAVLIDDALHYARECAGHLQ-KVLLFGEYSWNAADD----TALPEGVVRVRDWDAVLSTLDTL 210

The following BLAST results are available for this feature:

BLAST of NO28G01680 vs. NCBI_GenBank

BLAST of NO28G01680 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20

Position :

Zoom :

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Match Name	E-value	Identity	Description
XP_005855067.1	4.900e-38	67.54	5 deoxy cytosolic type c protein domain containing...	[more]
CBJ32884.1	2.800e-25	44.20	conserved unknown protein [Ectocarpus siliculosus]	[more]
XP_022147633.1	3.600e-25	48.85	uncharacterized protein LOC111016509 [Momordica ch...	[more]
XP_008450982.1	6.200e-25	48.85	PREDICTED: uncharacterized protein LOC103492406 is...	[more]
XP_008450985.1	6.200e-25	48.85	PREDICTED: uncharacterized protein LOC103492406 is...	[more]
XP_023531751.1	1.400e-24	46.27	uncharacterized protein LOC111793912 [Cucurbita pe...	[more]
XP_022967795.1	1.800e-24	46.27	uncharacterized protein LOC111467200 [Cucurbita ma...	[more]
XP_022987939.1	6.800e-24	46.32	uncharacterized protein LOC111485341 [Cucurbita ma...	[more]
XP_011660045.1	8.900e-24	48.09	PREDICTED: uncharacterized protein LOC101215456 [C...	[more]
XP_004998042.1	1.200e-23	42.86	hypothetical protein PTSG_11828 [Salpingoeca roset...	[more]

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Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
ncniR087	ncniR087	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR101	ngnoR101	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO28G01680.1	NO28G01680.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|612589	gene_11141	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO28G01680.1	NO28G01680.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO28G01680 ID=NO28G01680|Name=NO28G01680|organism=Nannochloropsis oceanica|type=gene|length=1042bp
AAGAAAGACGGAAAGCAACGAGCATCACCCTTGTCTTTATCTGATGAGAA
ATGGGGAGAGAGGAGAAAGTGGATAAATGGTCGACTAAAGCGGCAGCACC
TTTCATTTCTATGGTCCATACATTACAGGAGGAGCTGCCCCCCGTCCCCG
GAGCATACCAAATCCTTTTGGATCTGAAGCGCAAAGgtaagcatccgccc
tccctcccgtcctccctcccgccctcccaccctccctcccttctctttct
ctactcatctattgcttcctcatccgcccccttaccccccctttctccta
cagGCATTGATTTCCACCTCGTCACCTCCCGGCAGTTCCGAATCCAACCC
GAAACCGAAAAATGGATCGAGAAACACTACCCGGATATATTCACGGCCCT
TCACTACGGCAACCACTACGCCAgtacgccccttcctccctctctccctc
ccttcatttcttcctcccttgagcccacggcaccctcacaggcgacatgt
tctttcacgatcatcacctttgtctctcccgattcttccctccctccctc
cctccctccctccctccagCCTCAGGAACCCAGCATTCCAAGGCAGAAAT
GTGCCAAGCCATCGGCGCCCGCCTACTCATCGACGACTCGCTTCGATACG
CTCTCCAAGTCGCTACAGAAGCAGGAATTGAAGTCCTCCTTTTCGgtacg
tccctccctccctccctccctccagccctccttctcttcaacatgtctcc
atccgcctcttcgtttctcgaactgggcccctacttgtacatccctttcg
acaagcaccttccctccgtccctccctacccccctccctccctccatccc
tccctccctgactcctctttcttcgcagGCGACTACGCATGGAACCAGCC
CGACTCCTCCCTCCACCCCTCCCTCTTGCCCCCCCTCGTCACGCGGGTCA
CCCATTGGGATGCCGTTAAAGAGCGCATAGAAGCAATGCACGATGAGCAC
CGTTCACTACTGCTGCTGCAGCAGCAGCAGCAGCAGCAATAG

protein sequence of NO28G01680.1

>NO28G01680.1-protein ID=NO28G01680.1-protein|Name=NO28G01680.1|organism=Nannochloropsis oceanica|type=polypeptide|length=182bp
MGREEKVDKWSTKAAAPFISMVHTLQEELPPVPGAYQILLDLKRKGIDFH
LVTSRQFRIQPETEKWIEKHYPDIFTALHYGNHYATSGTQHSKAEMCQAI
GARLLIDDSLRYALQVATEAGIEVLLFGDYAWNQPDSSLHPSLLPPLVTR
VTHWDAVKERIEAMHDEHRSLLLLQQQQQQQ*

Synonyms

Publications