NO28G01680, NO28G01680 (gene) Nannochloropsis oceanica

Overview
NameNO28G01680
Unique NameNO28G01680
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1042
Alignment locationchr28:525220..526261 -

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Properties
Property NameValue
Description5 deoxy cytosolic type c protein domain containing protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:525220..526261 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036412HAD-like_sf
Homology
[Close]
BLAST of NO28G01680 vs. NCBI_GenBank
Match: XP_005855067.1 (5 deoxy cytosolic type c protein domain containing protein [Nannochloropsis gaditana CCMP526] >EKU21290.1 5 deoxy cytosolic type c protein domain containing protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 167.2 bits (422), Expect = 4.900e-38
Identity = 77/114 (67.54%), Postives = 90/114 (78.95%), Query Frame = 0 
Query:   56 QFRIQPETEKWIEKHYPDIFTALHYGNHYATSGTQHSKAEMCQAIGARLLIDDSLRYALQVATEAGIEVLLFGDYAWNQPDSSLHPSLLPPLVTRVTHWDAVKERIEAMHDEHR 170
            QF IQ ETE+W++KHYP IFT LHYGNHY+ +G Q SK +MCQAI A+LL+DDSLRYA QVA +AGI VLLFGDYAWNQ D SL PS LPP +TRVT W+ V+  IEA+   HR
Sbjct:   73 QFCIQRETEEWVQKHYPGIFTGLHYGNHYSATGPQRSKGDMCQAIKAQLLVDDSLRYAHQVAQDAGIPVLLFGDYAWNQADPSLPPSSLPPSITRVTRWEDVRVHIEALLASHR 186
[Close]
BLAST of NO28G01680 vs. NCBI_GenBank
Match: CBJ32884.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 124.8 bits (312), Expect = 2.800e-25
Identity = 61/138 (44.20%), Postives = 88/138 (63.77%), Query Frame = 0 
Query:   29 LPPVPGAYQILLDLKRKGIDFHLVTSRQFRIQPETEKWIEKHYPDIFTALHYGNHYATSGTQHSKAEMCQAIGARLLIDDSLRYALQVATEAGIEVLLFGDYAWNQPDSSLHPSLLPPLVTRVTHWDAVKERIEAMHD 167
            +PP+ GA ++L    R  + F+LVTSRQ  +Q  T++WI+ HYP IF  L +GNH++T G   SK ++C+ IGA ++IDD+ +YA + A+ AGI  LLFGDYAWN+ D       LP  V RV  W  V   ++++ D
Sbjct:   14 IPPLAGAAEVLRKHSRT-LTFYLVTSRQDSLQAHTKRWIDAHYPGIFAGLRFGNHFSTEGAVRSKPDLCRMIGAEMIIDDNTKYATECAS-AGIRTLLFGDYAWNRTDGP-----LPANVLRVPTWAEVDAELQSIVD 144
[Close]
BLAST of NO28G01680 vs. NCBI_GenBank
Match: XP_022147633.1 (uncharacterized protein LOC111016509 [Momordica charantia] >XP_022147634.1 uncharacterized protein LOC111016509 [Momordica charantia])

HSP 1 Score: 124.4 bits (311), Expect = 3.600e-25
Identity = 64/131 (48.85%), Postives = 88/131 (67.18%), Query Frame = 0 
Query:   31 PVPGAYQILLDLKRKGIDFHLVTSRQFRIQPETEKWIEKHYPDIFTALHYGNHYATSGTQHSKAEMCQAIGARLLIDDSLRYALQVATEAGIEVLLFGDYAWNQPDSSLHPSLLPPLVTRVTHWDAVKERI 162
            P+PGA   LL L R      +VTSRQ  I+  T +WIEKHYP +F  +H+GNH+A  G   SKAE+C+++GA +LIDD+ RYA++ A EAGI VLLF DY  + P        LPPLVT+V +W+ V++++
Sbjct:  207 PIPGAQSTLLKLSR-FCHLSVVTSRQNAIKDHTLEWIEKHYPGLFQEIHFGNHFALDGESRSKAEICKSLGASVLIDDNPRYAIECA-EAGIRVLLF-DYENSYPWCKTESEDLPPLVTKVQNWEDVEKQL 334
[Close]
BLAST of NO28G01680 vs. NCBI_GenBank
Match: XP_008450982.1 (PREDICTED: uncharacterized protein LOC103492406 isoform X1 [Cucumis melo] >XP_008450983.1 PREDICTED: uncharacterized protein LOC103492406 isoform X1 [Cucumis melo])

HSP 1 Score: 123.6 bits (309), Expect = 6.200e-25
Identity = 64/131 (48.85%), Postives = 87/131 (66.41%), Query Frame = 0 
Query:   31 PVPGAYQILLDLKRKGIDFHLVTSRQFRIQPETEKWIEKHYPDIFTALHYGNHYATSGTQHSKAEMCQAIGARLLIDDSLRYALQVATEAGIEVLLFGDYAWNQPDSSLHPSLLPPLVTRVTHWDAVKERI 162
            P+PGA   LL L R      +VTSRQ  I+  T +WIEKHYP +F  +H+GNH+A  G   SKAE+C+++GA +LIDD+ RYA++ A EAGI VLLF DY  + P        LPPLVT+V +W+ V++ +
Sbjct:  196 PIPGAQSTLLKLSR-FCHLSVVTSRQNAIKEHTLEWIEKHYPGLFQEIHFGNHFALDGESRSKAEICKSLGASVLIDDNPRYAIECA-EAGIRVLLF-DYENSYPWCKTECGNLPPLVTKVHNWEEVEKHL 323
[Close]
BLAST of NO28G01680 vs. NCBI_GenBank
Match: XP_008450985.1 (PREDICTED: uncharacterized protein LOC103492406 isoform X2 [Cucumis melo])

HSP 1 Score: 123.6 bits (309), Expect = 6.200e-25
Identity = 64/131 (48.85%), Postives = 87/131 (66.41%), Query Frame = 0 
Query:   31 PVPGAYQILLDLKRKGIDFHLVTSRQFRIQPETEKWIEKHYPDIFTALHYGNHYATSGTQHSKAEMCQAIGARLLIDDSLRYALQVATEAGIEVLLFGDYAWNQPDSSLHPSLLPPLVTRVTHWDAVKERI 162
            P+PGA   LL L R      +VTSRQ  I+  T +WIEKHYP +F  +H+GNH+A  G   SKAE+C+++GA +LIDD+ RYA++ A EAGI VLLF DY  + P        LPPLVT+V +W+ V++ +
Sbjct:  191 PIPGAQSTLLKLSR-FCHLSVVTSRQNAIKEHTLEWIEKHYPGLFQEIHFGNHFALDGESRSKAEICKSLGASVLIDDNPRYAIECA-EAGIRVLLF-DYENSYPWCKTECGNLPPLVTKVHNWEEVEKHL 318
[Close]
BLAST of NO28G01680 vs. NCBI_GenBank
Match: XP_023531751.1 (uncharacterized protein LOC111793912 [Cucurbita pepo subsp. pepo] >XP_023531752.1 uncharacterized protein LOC111793912 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 122.5 bits (306), Expect = 1.400e-24
Identity = 62/134 (46.27%), Postives = 89/134 (66.42%), Query Frame = 0 
Query:   31 PVPGAYQILLDLKRKGIDFHLVTSRQFRIQPETEKWIEKHYPDIFTALHYGNHYATSGTQHSKAEMCQAIGARLLIDDSLRYALQVATEAGIEVLLFGDYAWNQPDSSLHPSLLPPLVTRVTHWDAVKERIEAM 165
            P+PGA   LL L R      +VTSRQ  I+  T +WIEKH+P +F  +H+GNH+A  G   SK E+C+++GA +LIDD+ RYA++ A EAGI VLLF DY  + P        LPPLVT+V +W+ V++++ ++
Sbjct:  196 PIPGAQSTLLKLSR-FCHLSVVTSRQNAIKEHTLEWIEKHFPGLFQEIHFGNHFALDGVSRSKEEICKSVGATVLIDDNPRYAIECA-EAGIRVLLF-DYENSYPWCKTETEDLPPLVTKVYNWEDVEKQLTSL 326
[Close]
BLAST of NO28G01680 vs. NCBI_GenBank
Match: XP_022967795.1 (uncharacterized protein LOC111467200 [Cucurbita maxima])

HSP 1 Score: 122.1 bits (305), Expect = 1.800e-24
Identity = 62/134 (46.27%), Postives = 89/134 (66.42%), Query Frame = 0 
Query:   31 PVPGAYQILLDLKRKGIDFHLVTSRQFRIQPETEKWIEKHYPDIFTALHYGNHYATSGTQHSKAEMCQAIGARLLIDDSLRYALQVATEAGIEVLLFGDYAWNQPDSSLHPSLLPPLVTRVTHWDAVKERIEAM 165
            P+PGA   LL L R      +VTSRQ  I+  T +WIEKH+P +F  +H+GNH+A  G   SK E+C+++GA +LIDD+ RYA++ A EAGI VLLF DY  + P        LPPLVT+V +W+ V++++ ++
Sbjct:  196 PIPGAQSTLLKLSR-FCHLSVVTSRQNAIKEHTLEWIEKHFPGLFQEIHFGNHFALDGVSRSKEEICKSLGATVLIDDNPRYAIECA-EAGIRVLLF-DYENSYPWCKTETEDLPPLVTKVYNWEDVEKQLTSL 326
[Close]
BLAST of NO28G01680 vs. NCBI_GenBank
Match: XP_022987939.1 (uncharacterized protein LOC111485341 [Cucurbita maxima])

HSP 1 Score: 120.2 bits (300), Expect = 6.800e-24
Identity = 63/136 (46.32%), Postives = 90/136 (66.18%), Query Frame = 0 
Query:   26 QEELPPVPGAYQILLDLKRKGIDFHLVTSRQFRIQPETEKWIEKHYPDIFTALHYGNHYATSGTQHSKAEMCQAIGARLLIDDSLRYALQVATEAGIEVLLFGDYAWNQPDSSLHPSLLPPLVTRVTHWDAVKERI 162
            Q  + P+PGA  +LL L R      +VTSRQ  I+  T KWI++HYP +F  +H+GNH+A  G   SKAE+C+++GA +LIDD+ RYA++ A EAGI VLLF DY  + P        LP LVT+V +W+ V++++
Sbjct:  178 QSGIWPIPGAQSMLLKLSR-FCHLSVVTSRQNAIKEHTLKWIDRHYPGLFQEIHFGNHFALDGESRSKAEICKSLGASVLIDDNPRYAIECA-EAGIRVLLF-DYENSYPWCKTGYEDLPALVTKVHNWEDVEQQL 310
[Close]
BLAST of NO28G01680 vs. NCBI_GenBank
Match: XP_011660045.1 (PREDICTED: uncharacterized protein LOC101215456 [Cucumis sativus] >KGN66338.1 hypothetical protein Csa_1G598340 [Cucumis sativus])

HSP 1 Score: 119.8 bits (299), Expect = 8.900e-24
Identity = 63/131 (48.09%), Postives = 86/131 (65.65%), Query Frame = 0 
Query:   31 PVPGAYQILLDLKRKGIDFHLVTSRQFRIQPETEKWIEKHYPDIFTALHYGNHYATSGTQHSKAEMCQAIGARLLIDDSLRYALQVATEAGIEVLLFGDYAWNQPDSSLHPSLLPPLVTRVTHWDAVKERI 162
            P+PGA   LL L R      +VTSRQ  I+  T +WIEKHY  +F  +H+GNH+A  G   SKAE+C++ GA +LIDD+ RYA++ A EAGI VLLF DY  + P        LPPLVT+V +W+ V++++
Sbjct:  214 PIPGAQSTLLKLSR-FCHLSVVTSRQNAIKEHTLEWIEKHYQGLFQEIHFGNHFALDGESRSKAEICKSFGASVLIDDNPRYAIECA-EAGIRVLLF-DYENSYPWCKTECGDLPPLVTKVHNWEEVEKQL 341
[Close]
BLAST of NO28G01680 vs. NCBI_GenBank
Match: XP_004998042.1 (hypothetical protein PTSG_11828 [Salpingoeca rosetta] >EGD79086.1 hypothetical protein PTSG_11828 [Salpingoeca rosetta])

HSP 1 Score: 119.4 bits (298), Expect = 1.200e-23
Identity = 66/154 (42.86%), Postives = 90/154 (58.44%), Query Frame = 0 
Query:   11 STKAAAPFISMVHTLQEELPPVPGAYQILLDLKRKGIDFHLVTSRQFRIQPETEKWIEKHYPDIFTALHYGNHYATSGTQHSKAEMCQAIGARLLIDDSLRYALQVATEAGIEVLLFGDYAWNQPDSSLHPSLLPPLVTRVTHWDAVKERIEAM 165
            S+K    F+   H  +  L  VPGA + L  L  K  D  +VTSRQ  I PET +W+E H+P+ F ++ +GNH+   G + SK EMC AIGA +LIDD+L YA + A     +VLLFG+Y+WN  D     + LP  V RV  WDAV   ++ +
Sbjct:   64 SSKKVHDFLESKH-FKNGLRLVPGAQEALAKLAEK-YDLVIVTSRQHIIAPETHEWVETHFPNTFKSILFGNHWGLHGEKKSKPEMCTAIGAAVLIDDALHYARECAGHLQ-KVLLFGEYSWNAADD----TALPEGVVRVRDWDAVLSTLDTL 210
The following BLAST results are available for this feature:
BLAST of NO28G01680 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005855067.14.900e-3867.545 deoxy cytosolic type c protein domain containing... [more]
CBJ32884.12.800e-2544.20conserved unknown protein [Ectocarpus siliculosus][more]
XP_022147633.13.600e-2548.85uncharacterized protein LOC111016509 [Momordica ch... [more]
XP_008450982.16.200e-2548.85PREDICTED: uncharacterized protein LOC103492406 is... [more]
XP_008450985.16.200e-2548.85PREDICTED: uncharacterized protein LOC103492406 is... [more]
XP_023531751.11.400e-2446.27uncharacterized protein LOC111793912 [Cucurbita pe... [more]
XP_022967795.11.800e-2446.27uncharacterized protein LOC111467200 [Cucurbita ma... [more]
XP_022987939.16.800e-2446.32uncharacterized protein LOC111485341 [Cucurbita ma... [more]
XP_011660045.18.900e-2448.09PREDICTED: uncharacterized protein LOC101215456 [C... [more]
XP_004998042.11.200e-2342.86hypothetical protein PTSG_11828 [Salpingoeca roset... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR087ncniR087Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR101ngnoR101Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO28G01680.1NO28G01680.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|612589gene_11141Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO28G01680.1NO28G01680.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO28G01680 ID=NO28G01680|Name=NO28G01680|organism=Nannochloropsis oceanica|type=gene|length=1042bp
AAGAAAGACGGAAAGCAACGAGCATCACCCTTGTCTTTATCTGATGAGAA
ATGGGGAGAGAGGAGAAAGTGGATAAATGGTCGACTAAAGCGGCAGCACC
TTTCATTTCTATGGTCCATACATTACAGGAGGAGCTGCCCCCCGTCCCCG
GAGCATACCAAATCCTTTTGGATCTGAAGCGCAAAGgtaagcatccgccc
tccctcccgtcctccctcccgccctcccaccctccctcccttctctttct
ctactcatctattgcttcctcatccgcccccttaccccccctttctccta
cagGCATTGATTTCCACCTCGTCACCTCCCGGCAGTTCCGAATCCAACCC
GAAACCGAAAAATGGATCGAGAAACACTACCCGGATATATTCACGGCCCT
TCACTACGGCAACCACTACGCCAgtacgccccttcctccctctctccctc
ccttcatttcttcctcccttgagcccacggcaccctcacaggcgacatgt
tctttcacgatcatcacctttgtctctcccgattcttccctccctccctc
cctccctccctccctccagCCTCAGGAACCCAGCATTCCAAGGCAGAAAT
GTGCCAAGCCATCGGCGCCCGCCTACTCATCGACGACTCGCTTCGATACG
CTCTCCAAGTCGCTACAGAAGCAGGAATTGAAGTCCTCCTTTTCGgtacg
tccctccctccctccctccctccagccctccttctcttcaacatgtctcc
atccgcctcttcgtttctcgaactgggcccctacttgtacatccctttcg
acaagcaccttccctccgtccctccctacccccctccctccctccatccc
tccctccctgactcctctttcttcgcagGCGACTACGCATGGAACCAGCC
CGACTCCTCCCTCCACCCCTCCCTCTTGCCCCCCCTCGTCACGCGGGTCA
CCCATTGGGATGCCGTTAAAGAGCGCATAGAAGCAATGCACGATGAGCAC
CGTTCACTACTGCTGCTGCAGCAGCAGCAGCAGCAGCAATAG
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protein sequence of NO28G01680.1

>NO28G01680.1-protein ID=NO28G01680.1-protein|Name=NO28G01680.1|organism=Nannochloropsis oceanica|type=polypeptide|length=182bp
MGREEKVDKWSTKAAAPFISMVHTLQEELPPVPGAYQILLDLKRKGIDFH
LVTSRQFRIQPETEKWIEKHYPDIFTALHYGNHYATSGTQHSKAEMCQAI
GARLLIDDSLRYALQVATEAGIEVLLFGDYAWNQPDSSLHPSLLPPLVTR
VTHWDAVKERIEAMHDEHRSLLLLQQQQQQQ*
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Synonyms
Publications