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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr28 | genome | chr28:486778..490871 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO28G01530.4 vs.
Match: XP_008617107.1 (hypothetical protein SDRG_12804 [Saprolegnia diclina VS20]; EQC29555.1 hypothetical protein SDRG_12804 [Saprolegnia diclina VS20]) HSP 1 Score: 86.3 bits (212), Expect = 2.900e-13 Identity = 47/114 (41.23%), Postives = 71/114 (62.28%), Query Frame = 0
Query: 380 NRFRIGFATTTLVTVWV----VATFGPQLRSFFSKHAAEVTKETLQNEALQIQTRELSAAVVQYILTDPDVLFRAQNFLREAAENVETQKSLVELARHVFSHPSTLEVVVDLAR 490
+R + F LVT+ + + F P+L++ SK AEV ETLQNE LQIQT+EL++ +VQ +L DP VL +A F++ +E TQK+LV L +V ++P T+ V L++
Sbjct: 38 SRHKASFNKWGLVTIGLGGLCLVAFAPELKNSMSKTTAEVASETLQNEMLQIQTQELASQIVQTVLNDPKVLHQASQFIKNLSETETTQKALVVLTSNVLNNPQTMAQVTKLSK 151
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO28G01530.4 ID=NO28G01530.4|Name=NO28G01530.4|organism=Nannochloropsis oceanica|type=mRNA|length=2956bp CAATCCAGGCTCGCAAGAGATAACAAGGCCACAACCATGTATCACGGTGG GCGGGCTTTTAAAAGGTAGGGATAAATGACAAGAGGTGGGAGGGAGGGCA GTCAGGGCCGGGAGCTTGGGAGGCAGTGCTCGCCGGCAACATCACGCACC ATTCTATACTCTTCCATTTGTGAGATGGCTGTGGCTTATGTGGGACTGTA TCAAGAGAGCGAATACGCGCAAAAAGGGGCGGGCGGTGAGGGGCTTGGAA TAACGCGGCAAGGGAAGGGCTTAATGGAGGGTACGCCAGGCACCAGCGGA ACGACCACCTACACCTCTCTTGACGCACCCTTAACAATATACCCACCACA CAGTCATTGGCATGGTTGCTTATGGCAGCAACTGCAGCAGAGTCTGCCGG CCGCCACGGCCACAACCGGTGCTGCTGCTCGCGTTAGCGTCGCAGCCGCT CCCTCCTCCCCTTCCTCCTCCCTCTCCTCCTCCTCCTCCTCCTCCTCCCC CCCGTCTCCTTTACAATCACATACGGCAGGAGCATCGCCATCGAGTGCAG GCATGTCACATGTTCGACTTTCATCGGCGTCGTCGCAACAACAACCATTA ATGCAGCAGATGGGTCACCACAGTCGCGAGAAACTCCACTTGACGAGAGC CTTGTGTCCGCCTTCTGCTCTGGAAAGAATTAAAATGGTGATTGGAGGCA GAGGAAGAGGGACAGGAGGAGAAATGGTGGGAGGACCAAAAGGAGGAGGA AGAGGAGGTATGTCTGTGCGTATGCTACACATGACATTACCGGGAAGACG AGCATTGGGAGCAGGGGGAAGAGGAGAGAGAGGAGGGACAGGGAGCAACA GCAGCAGCAACAGCAGCAGCAGCAGTAGCAGCAGCAATAGCAGCAGCCAC AGTAGTGGTGCTCGAAGAGCTAGCAGTCATAACGGTAGTGGTCCAAATCC TTCTTCTCCTCCCCCTTCATCGATGCCGCCACCGCCTGGTGGTGGTGGAG GAGGAGGAGGAGGAGGAGGAGGAGGAGGGAGGAGGCCTGCTCCTGGTGCG GCTGAGGCTGCTGCCGGTGAAGGGGGAGGGGCGCACGGCACTACAGGCGC TGCTGGGGAGAAGGGGGTGGGAGGAAAAGCAACGAAGATCCTGCATCAAG GGAGCGTGATGTACGAGGACTTGGAGCGGGTCGTCATGAAGCAGATCCGA GCTACCAACCAAAACCGTTTCCGCATCGGTTTCGCCACTACCACGCTCGT AACGGTCTGGGTGGTGGCTACCTTTGGCCCCCAACTCCGCTCGTTCTTCT CCAAGCACGCGGCGGAGGTGACCAAAGAAACCCTACAAAACGAGGCCCTT CAGATCCAAACCCGCGAGCTCTCCGCCGCCGTCGTTCAGTACATCCTAAC TGATCCCGACGTCCTCTTCCGAGCTCAAAATTTTCTTCGGGAAGCGGCTG AGAATGTCGAGACTCAAAAGTCTCTTGTGGAGCTGGCGAGGCACGTGTTC TCCCATCCCTCCACCCTGGAGGTGGTGGTTGATCTGGCCAGGTAGGGAGG GAGGGAAAGAGGGAGGGAGGGAGGAGACATGGGGTTGGCCCAGCCGGTCA CGTGTTAAGGAGGGAGGGAGGGAGGGAGAGAGGGAGTGTGGTGTTGTGGT GTCCTCTTGCCCCGGGAGTGGTGAAGGGCCTGGACAGAAATAGAAGGAGG GAGTGAGGGAGGGAGCGAGGAAGAGCACACTACGCCCTTCTTACATGGCC CTCTCTTTTCCTCATCCGACAGGAGCCTCGTCCCTCGTGTTTTGCAATCC CAAGAAACCCTTGATCAGGTGGGCGTCCCTCCTTCCCTCCCTCCTTCCCT CCCTCCTCCCCTAATCCCTCCCCCCCTTCCTCAAATACCTCAAGGTCGCC GCTCTCCTCGCCAAAGTGATCGTCGAGCCGCCCGTTAAGGAAGCAGCCGT CGTCCTCCTCACCGAGCTGGTCAAAGACCCGGAGGTACGCCCTCCTTCCG TTCCCTCCCTCCCTCCTTACCCCCTTTCCTTCTACCGGTGTCCTTCCGAC ATCGCCATCTTTGTCCACCCCAGCAATCCCAGTGCACCATTGCCTTCTCG CGCTCATCTGGAGAGGAGACAAAATAATCCTCTCTCCTCTCTTCCTTTCC CTCCTTTCCGTCCCTCCATAGGTCTACACTGCCGTCGTTGAGCTCTCCAC TCGCCTGGTGGTTGATCCGCGGATCCAGGTTGCGGTAAATCAACTCTTAC TCACCTCGTCTCATAAGGTACATTATTTCGCCCTTCCTTCCTTCCTCCCT CCCTCCCTCCCTCCCTCCCTACAGGGATAAGGCGGTAAGGGAGACGGAGC GAGTTCTCGCTCTCTCTTATCTTGCCTCATTCACCTCCCCGTTCCCTCCT TCCTTCACTCCCTCCCTTTCTCCCTCCCCAGGTACTGGAAGACCCGGAAG TCGTCGATCATTCCAAGACATTCGTCGCCGAGGTGGTTGCCGATGACGCC TTACAACGGACAGGTAGGCAGGGAAGGAGGGAGGGGGAATGGGAAGGAGG GAAGGCATGTTTCATCATGGGCATCTATTTTCGCAAGAGGAAGGATGGAA TTTTGCCGTGAACTTCTTGAAGAAATGCCACTCAGTCATTCCGCCCTTTC TCCCCCTCTCTCTTCTGCAGGTGGCACGGCCATATGGAACTCGTTCCAAT ACTCCTTTCAACCGAAGCTCGTGCGTGTGTTGTGGTTTGGGCTTTTGTGC GGGGTAGTGGCTTTCATGAGAAGCAATGGCAGAGACGACGCCGTGGGGGG AGGGGCGTTTGGCTAGAGAGGGAAAGAGTGGACGAGTCTCAAACTCTTCA TACGAAAGAAAAGATATCTATCGGAGTGTAATTATTGGAATTTGAGTTTC TTTTTCAAAGGCGATGCAGGGCGTCAAAGAAGAAAGAACGGAGGGTAATT TAAGTT back to topprotein sequence of NO28G01530.4 >NO28G01530.4-protein ID=NO28G01530.4-protein|Name=NO28G01530.4|organism=Nannochloropsis oceanica|type=polypeptide|length=490bp MTRGGREGSQGRELGRQCSPATSRTILYSSICEMAVAYVGLYQESEYAQK GAGGEGLGITRQGKGLMEGTPGTSGTTTYTSLDAPLTIYPPHSHWHGCLW QQLQQSLPAATATTGAAARVSVAAAPSSPSSSLSSSSSSSSPPSPLQSHT AGASPSSAGMSHVRLSSASSQQQPLMQQMGHHSREKLHLTRALCPPSALE RIKMVIGGRGRGTGGEMVGGPKGGGRGGMSVRMLHMTLPGRRALGAGGRG ERGGTGSNSSSNSSSSSSSSNSSSHSSGARRASSHNGSGPNPSSPPPSSM PPPPGGGGGGGGGGGGGGRRPAPGAAEAAAGEGGGAHGTTGAAGEKGVGG KATKILHQGSVMYEDLERVVMKQIRATNQNRFRIGFATTTLVTVWVVATF GPQLRSFFSKHAAEVTKETLQNEALQIQTRELSAAVVQYILTDPDVLFRA QNFLREAAENVETQKSLVELARHVFSHPSTLEVVVDLAR* back to topmRNA from alignment at chr28:486778..490871- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO28G01530.4 ID=NO28G01530.4|Name=NO28G01530.4|organism=Nannochloropsis oceanica|type=mRNA|length=4094bp|location=Sequence derived from alignment at chr28:486778..490871- (Nannochloropsis oceanica) CAATCCAGGCTCGCAAGAGATAACAAGGCCACAACCATGTATCACGGTGG
GCGGGCTTTTAAAAGGTAGGGATAAATGACAAGAGGTGGGAGGGAGGGCA
GTCAGGGCCGGGAGCTTGGGAGGCAGTGCTCGCCGGCAACATCACGCACC
ATTCTATACTCTTCCATTTGTGAGATGGCTGTGGCTTATGTGGGACTGTA
TCAAGAGAGCGAATACGCGCAAAAAGGGGCGGGCGGTGAGGGGCTTGGAA
TAACGCGGCAAGGGAAGGGCTTAATGGAGGGTACGCCAGGCACCAGCGGA
ACGACCACCTACACCTCTCTTGACGCACCCTTAACAATATACCCACCACA
CAGTCATTGGCATGGTTGCTTATGGCAGCAACTGCAGCAGAGTCTGCCGG
CCGCCACGGCCACAACCGGTGCTGCTGCTCGCGTTAGCGTCGCAGCCGCT
CCCTCCTCCCCTTCCTCCTCCCTCTCCTCCTCCTCCTCCTCCTCCTCCCC
CCCGTCTCCTTTACAATCACATACGGCAGGAGCATCGCCATCGAGTGCAG
GCATGTCACATGTTCGACTTTCATCGGCGTCGTCGCAACAACAACCATTA
ATGCAGCAGATGGGTCACCACAGTCGCGAGAAACTCCACTTGACGAGAGC
CTTGTGTCCGCCTTCTGCTCTGGAAAGAATTAAAATGGTGATTGGAGGCA
GAGGAAGAGGGACAGGAGGAGAAATGGTGGGAGGACCAAAAGGAGGAGGA
AGAGGAGGTATGTCTGTGCGTATGCTACACATGACATTACCGGGAAGACG
AGCATTGGGAGCAGGGGGAAGAGGAGAGAGAGGAGGGACAGGGAGCAACA
GCAGCAGCAACAGCAGCAGCAGCAGTAGCAGCAGCAATAGCAGCAGCCAC
AGTAGTGGTGCTCGAAGAGCTAGCAGTCATAACGGTAGTGGTCCAAATCC
TTCTTCTCCTCCCCCTTCATCGATGCCGCCACCGCCTGGTGGTGGTGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGGAGGAGGCCTGCTCCTGGTGCG
GCTGAGGCTGCTGCCGGTGAAGGGGGAGGGGCGCACGGCACTACAGGCGC
TGCTGGGGAGAAGGGGGTGGGAGGAAAAGCAACGAAGATCCTGCATCAAG
GTATGCGAAGGGGGGGGAGGAGAGAGGGAGGGAGGGGAGGGAGGAGAATG
ACAGAGGGGGACGTGGTGGTGGAGGGAAGGGAGGGAGAGATAAGCTCTAC
TCTACTCTCCTCACTGAATGCTCCTCTGGTTCCAAATTAAATCAAATTAA
ATGGCTTTTGAACAGGGAGCGTGATGTACGAGGACTTGGAGCGGGTCGTC
ATGAAGCAGGTACGGAGGGAGGGAGGGAGGGAGAGGGAAGGAGGGAGGGA
AGGAGGGAAGGAGGGAGGACAGGCATAGCCATAGATTGTACGTCAAAAGA
ATGATTTCCACCTGCCGTCCTAATCCTCCCTCCCTCCCTCCCTCCCTTCC
TCCCTCCCTCCCTCGCTCCCTCCCTCCCGTCTTCCCTTAGATCCGAGCTA
CCAACCAAAACCGTTTCCGCATCGGTTTCGCCACTACCACGCTCGTAACG
GTCTGGGTGGTGGCTACCTTTGGCCCCCAACTCCGGTGGGTCCTCTCTCC
CTCCCTCCCTCCTTCCTTCCCTTCTTCCCTCGGCTCCCTGTCCCCAAAGT
ACACGGCAGAGGTCATCCTAGAAACGTTCTACCTCCCTCCTCTCCCTCCC
TCTCTCCCTCCTTCCCTCTCCCTCCCTCCCTCCCTCCGTACCTGCTTCAT
GACGACCCGCTCCAAGTCCTCGTACATCACGCTCCCTGTTCAAAAGCCAA
TTAATTTAATTTAATTTGGAAACAGAGGAGCATTCAGTGAGGAGAGTAGA
GTAGAGCTTACCTCTCCCTCCCTCCCGCCTTCCCTCCCTCTCTCCCGCCC
TCCCTCCCGCCCTCCATCAGCTCGTTCTTCTCCAAGCACGCGGCGGAGGT
GACCAAAGAAACCCTACAAAACGAGGCCCTTCAGATCCAAACCCGCGAGC
TCTCCGCCGCCGTCGTTCAGTACATCCTAACTGGTAGGTAGGTAGGTGGG
TCGATAGGTGTGTACGTATGGATGTATGCATGGAGGTACGTGCGTGTGTG
TGTATGTGATTGTGTGAGCTGGCTGCTCTGCTGCTTCCCTCCGTTCATCT
TCCCTCCTTTCCTCCTCCCTTTCCTTCTCTCCCCCTCTCCCCCTCTGCCT
TCCCTCCTTTCCTCCTCCCTTTCCTTCTCTCCCCCTCTCCCCCTCTGCCT
TCCCTCCTTTCCCTCTTTTCCTCCCTTTGGCCTACGGGAGTCGGAGACTC
TCACTGTTGAAAACATGTTTGTTAATATAGCTCAAATTAGAAAGGCAAGG
ATGTTAATATAGCTCAGATTAAGAAGGCAAGGATATTGATGTGGCTCAGA
TTAGAAAGACAAGGACGTTAATATATCTCGGATTTAAAATGCCTGGAGAT
AAAACCCACGCACCCGCCCCCTCCTTCCCTCCCTACCTAGATCCCGACGT
CCTCTTCCGAGCTCAAAATTTTCTTCGGGAAGCGGCTGAGAATGTCGAGA
CTCAAAAGTCTCTTGTGGAGCTGGCGAGGCACGTGTTCTCCCATCCCTCC
ACCCTGGAGGTGGTGGTTGATCTGGCCAGGTAGGGAGGGAGGGAAAGAGG
GAGGGAGGGAGGAGACATGGGGTTGGCCCAGCCGGTCACGTGTTAAGGAG
GGAGGGAGGGAGGGAGAGAGGGAGTGTGGTGTTGTGGTGTCCTCTTGCCC
CGGGAGTGGTGAAGGGCCTGGACAGAAATAGAAGGAGGGAGTGAGGGAGG
GAGCGAGGAAGAGCACACTACGCCCTTCTTACATGGCCCTCTCTTTTCCT
CATCCGACAGGAGCCTCGTCCCTCGTGTTTTGCAATCCCAAGAAACCCTT
GATCAGGTGGGCGTCCCTCCTTCCCTCCCTCCTTCCCTCCCTCCTCCCCT
AATCCCTCCCCCCCTTCCTCAAATACCTCAAGGTCGCCGCTCTCCTCGCC
AAAGTGATCGTCGAGCCGCCCGTTAAGGAAGCAGCCGTCGTCCTCCTCAC
CGAGCTGGTCAAAGACCCGGAGGTACGCCCTCCTTCCGTTCCCTCCCTCC
CTCCTTACCCCCTTTCCTTCTACCGGTGTCCTTCCGACATCGCCATCTTT
GTCCACCCCAGCAATCCCAGTGCACCATTGCCTTCTCGCGCTCATCTGGA
GAGGAGACAAAATAATCCTCTCTCCTCTCTTCCTTTCCCTCCTTTCCGTC
CCTCCATAGGTCTACACTGCCGTCGTTGAGCTCTCCACTCGCCTGGTGGT
TGATCCGCGGATCCAGGTTGCGGTAAATCAACTCTTACTCACCTCGTCTC
ATAAGGTACATTATTTCGCCCTTCCTTCCTTCCTCCCTCCCTCCCTCCCT
CCCTCCCTACAGGGATAAGGCGGTAAGGGAGACGGAGCGAGTTCTCGCTC
TCTCTTATCTTGCCTCATTCACCTCCCCGTTCCCTCCTTCCTTCACTCCC
TCCCTTTCTCCCTCCCCAGGTACTGGAAGACCCGGAAGTCGTCGATCATT
CCAAGACATTCGTCGCCGAGGTGGTTGCCGATGACGCCTTACAACGGACA
GGTAGGCAGGGAAGGAGGGAGGGGGAATGGGAAGGAGGGAAGGCATGTTT
CATCATGGGCATCTATTTTCGCAAGAGGAAGGATGGAATTTTGCCGTGAA
CTTCTTGAAGAAATGCCACTCAGTCATTCCGCCCTTTCTCCCCCTCTCTC
TTCTGCAGGTGGCACGGCCATATGGAACTCGTTCCAATACTCCTTTCAAC
CGAAGCTCGTGCGTGTGTTGTGGTTTGGGCTTTTGTGCGGGGTAGTGGCT
TTCATGAGAAGCAATGGCAGAGACGACGCCGTGGGGGGAGGGGCGTTTGG
CTAGAGAGGGAAAGAGTGGACGAGTCTCAAACTCTTCATACGAAAGAAAA
GATATCTATCGGAGTGTAATTATTGGAATTTGAGTTTCTTTTTCAAAGGC
GATGCAGGGCGTCAAAGAAGAAAGAACGGAGGGTAATTTAAGTT back to topCoding sequence (CDS) from alignment at chr28:486778..490871- >NO28G01530.4 ID=NO28G01530.4|Name=NO28G01530.4|organism=Nannochloropsis oceanica|type=CDS|length=1470bp|location=Sequence derived from alignment at chr28:486778..490871- (Nannochloropsis oceanica) ATGACAAGAGGTGGGAGGGAGGGCAGTCAGGGCCGGGAGCTTGGGAGGCA GTGCTCGCCGGCAACATCACGCACCATTCTATACTCTTCCATTTGTGAGA TGGCTGTGGCTTATGTGGGACTGTATCAAGAGAGCGAATACGCGCAAAAA GGGGCGGGCGGTGAGGGGCTTGGAATAACGCGGCAAGGGAAGGGCTTAAT GGAGGGTACGCCAGGCACCAGCGGAACGACCACCTACACCTCTCTTGACG CACCCTTAACAATATACCCACCACACAGTCATTGGCATGGTTGCTTATGG CAGCAACTGCAGCAGAGTCTGCCGGCCGCCACGGCCACAACCGGTGCTGC TGCTCGCGTTAGCGTCGCAGCCGCTCCCTCCTCCCCTTCCTCCTCCCTCT CCTCCTCCTCCTCCTCCTCCTCCCCCCCGTCTCCTTTACAATCACATACG GCAGGAGCATCGCCATCGAGTGCAGGCATGTCACATGTTCGACTTTCATC GGCGTCGTCGCAACAACAACCATTAATGCAGCAGATGGGTCACCACAGTC GCGAGAAACTCCACTTGACGAGAGCCTTGTGTCCGCCTTCTGCTCTGGAA AGAATTAAAATGGTGATTGGAGGCAGAGGAAGAGGGACAGGAGGAGAAAT GGTGGGAGGACCAAAAGGAGGAGGAAGAGGAGGTATGTCTGTGCGTATGC TACACATGACATTACCGGGAAGACGAGCATTGGGAGCAGGGGGAAGAGGA GAGAGAGGAGGGACAGGGAGCAACAGCAGCAGCAACAGCAGCAGCAGCAG TAGCAGCAGCAATAGCAGCAGCCACAGTAGTGGTGCTCGAAGAGCTAGCA GTCATAACGGTAGTGGTCCAAATCCTTCTTCTCCTCCCCCTTCATCGATG CCGCCACCGCCTGGTGGTGGTGGAGGAGGAGGAGGAGGAGGAGGAGGAGG AGGGAGGAGGCCTGCTCCTGGTGCGGCTGAGGCTGCTGCCGGTGAAGGGG GAGGGGCGCACGGCACTACAGGCGCTGCTGGGGAGAAGGGGGTGGGAGGA AAAGCAACGAAGATCCTGCATCAAGGGAGCGTGATGTACGAGGACTTGGA GCGGGTCGTCATGAAGCAGATCCGAGCTACCAACCAAAACCGTTTCCGCA TCGGTTTCGCCACTACCACGCTCGTAACGGTCTGGGTGGTGGCTACCTTT GGCCCCCAACTCCGCTCGTTCTTCTCCAAGCACGCGGCGGAGGTGACCAA AGAAACCCTACAAAACGAGGCCCTTCAGATCCAAACCCGCGAGCTCTCCG CCGCCGTCGTTCAGTACATCCTAACTGATCCCGACGTCCTCTTCCGAGCT CAAAATTTTCTTCGGGAAGCGGCTGAGAATGTCGAGACTCAAAAGTCTCT TGTGGAGCTGGCGAGGCACGTGTTCTCCCATCCCTCCACCCTGGAGGTGG TGGTTGATCTGGCCAGGTAG back to top
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