NO28G01510.1, NO28G01510.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO28G01510.1
Unique NameNO28G01510.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1060
Alignment locationchr28:481686..483475 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:481686..483475 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO28G01510.1 vs.
Match: EWM20651.1 (Protein of unknown function DUF1640 [Nannochloropsis gaditana])

HSP 1 Score: 235.3 bits (599), Expect = 1.900e-58
Identity = 139/190 (73.16%), Postives = 163/190 (85.79%), Query Frame = 0 
Query:   21 SSSSPTPTSTPPS-STPSSSGVAPPLFSTPFASSS--SSSPSLSTVQTPASVLGPGKAVVSFDTYKVAESLQEAGFSKGQAEAILRVVVAGMEESTLKSTAMIATRRDLLDLKTELSEKLFSSTMRFDVAQRHSKEVIEKDLMSVRSEFKASIHAEYQKLEKEMSNVEKVLTDRHLTRRELMEQRVSVLQ 208
            SSSS + +S+P S S+PSSS   PPLFSTPF +S   S +PS  + Q  AS+LGPGKAVVSFDT K+ +SLQEAGFSK QA+ +LRV+VAGMEE TL+STAMIATRRDLLDLK++LSE+LF STMRFDVAQRH+KEVIE+DL S+RS+  ASIHAE QK+E+EMSN+EKVLTDRHLTRRELMEQRVSVLQ
Sbjct:   30 SSSSSSSSSSPSSPSSPSSSSSPPPLFSTPFNASPTLSGTPSAPSSQIHASLLGPGKAVVSFDTMKMCDSLQEAGFSKAQAQTVLRVLVAGMEECTLRSTAMIATRRDLLDLKSDLSERLFGSTMRFDVAQRHNKEVIERDLQSLRSDVNASIHAEIQKIEREMSNLEKVLTDRHLTRRELMEQRVSVLQ 219
The following BLAST results are available for this feature:
BLAST of NO28G01510.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20651.11.900e-5873.16Protein of unknown function DUF1640 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO28G01510NO28G01510Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO28G01510.1NO28G01510.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO28G01510.1.cds1NO28G01510.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G01510.1.cds2NO28G01510.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G01510.1.cds3NO28G01510.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G01510.1.cds4NO28G01510.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G01510.1.cds5NO28G01510.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO28G01510.1 ID=NO28G01510.1|Name=NO28G01510.1|organism=Nannochloropsis oceanica|type=mRNA|length=1060bp
ACCCCAGTGTTGTACAACTCCTACCTCCCTCTCGGAGACGTCCCACCACC
CTTCGTATACCCTGATTCCACCTGGATACACGGCCCGATTCAGGCAAAAT
GCTTATCTCCGGCCGCCGGTTGCTTCAGTCGACTGCTTGCCGTCAATGCC
GCCTCGTTTCCTCCTCCTCCCCCACGCCTACCTCTACACCTCCTTCCTCT
ACGCCCTCCTCGTCTGGCGTTGCCCCCCCGCTCTTCTCCACCCCCTTCGC
CTCTTCTTCCTCATCGAGCCCCTCCTTATCAACTGTGCAGACTCCGGCCT
CTGTCCTCGGCCCGGGTAAGGCGGTCGTGTCCTTTGACACCTACAAGGTC
GCCGAGTCTCTGCAAGAAGCCGGTTTTAGCAAAGGCCAAGCTGAAGCGAT
CCTACGGGTAGTCGTCGCGGGAATGGAGGAGTCCACGCTGAAAAGCACAG
CAATGATTGCCACTCGCCGGGACCTGCTCGACCTCAAGACCGAGCTGAGC
GAGAAACTATTCAGCAGCACCATGCGTTTTGACGTTGCTCAACGGCACAG
CAAGGAAGTGATCGAAAAAGATCTTATGTCCGTGCGGTCCGAATTTAAGG
CATCCATCCATGCCGAGTATCAGAAGCTTGAGAAAGAAATGTCAAATGTG
GAAAAGGTCCTGACCGACCGGCATTTGACGCGGAGGGAACTCATGGAACA
GCGAGTATCCGTGCTGCAGAACGAGATTGCCCAGGTGGAGAAGCGAGTCG
TCCAATATGGTGCGGGGACGCTTCTGTCCCTCTTGACGGTAGGCTTGGGG
TTTGCCCGCTTGATGATGTGAGGAGGGAGGGAGGGATGAGGCGAGGAGAA
GTGTAAATGAAATAAGGGTAAGATATTTGCGGGGCTGAGTGCTTCTTATT
ACCAGCGTGTTGCGAGCTGCATGCTCCAGCATAGGGAAAGAGGGCAAAGA
CAGATGCAAAAGGCGAAACGTGTAAAGAGATGAGGTTGTCGAATGAAGGT
GTCCATCGATGGTATTGTAATGGTCATTGTCAAACCTGAAAGATTTAAAT
AATAACCCAG
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protein sequence of NO28G01510.1

>NO28G01510.1-protein ID=NO28G01510.1-protein|Name=NO28G01510.1|organism=Nannochloropsis oceanica|type=polypeptide|length=241bp
MLISGRRLLQSTACRQCRLVSSSSPTPTSTPPSSTPSSSGVAPPLFSTPF
ASSSSSSPSLSTVQTPASVLGPGKAVVSFDTYKVAESLQEAGFSKGQAEA
ILRVVVAGMEESTLKSTAMIATRRDLLDLKTELSEKLFSSTMRFDVAQRH
SKEVIEKDLMSVRSEFKASIHAEYQKLEKEMSNVEKVLTDRHLTRRELME
QRVSVLQNEIAQVEKRVVQYGAGTLLSLLTVGLGFARLMM*
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mRNA from alignment at chr28:481686..483475-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO28G01510.1 ID=NO28G01510.1|Name=NO28G01510.1|organism=Nannochloropsis oceanica|type=mRNA|length=1790bp|location=Sequence derived from alignment at chr28:481686..483475- (Nannochloropsis oceanica)
ACCCCAGTGTTGTACAACTCCTACCTCCCTCTCGGAGACGTCCCACCACC
CTTCGTATACCCTGATTCCACCTGGATACACGGCCCGATTCAGGCAAAAT
GCTTATCTCCGGCCGCCGGTTGCTTCAGTCGACTGCTTGCCGTCAATGCC
GCCTCGTTTCCTCCTCCTCCCCCACGCCTACCTCTACACCTCCTTCCTCT
ACGCCCTCCTCGTCTGGCGTTGCCCCCCCGCTCTTCTCCACCCCCTTCGC
CTCTTCTTCCTCATCGAGCCCCTCCTTATCAACTGTGCAGACTCCGGCCT
CTGTCCTCGGCCCGGGTAAGGCGGTCGTGTCCTTTGACACCTACAAGGTG
AGGAAGAGACGATACATGCCTTTATCATCTTCATACCTTCCCCTTCCCTA
CCTTTCCACCTTACTTCCTACATTCTGCCTTGACAGTCTTGAGCGATACG
AATGCTTGCTTCTTTAATGCCTTATCCTCCCTAATTGTATTCGATCTTGT
CTCCTGTCCTCCCTCCTCTCATGCGCCGCCCTAGGTCGCCGAGTCTCTGC
AAGAAGCCGGTTTTAGCAAAGGCCAAGCTGAAGCGATCCTACGGGTAGTC
GTCGCGGGAATGGAGGAGTCCACGCTGAAAAGCACAGCAATGGTACGTAG
GGGTGAACGAGGAAAGGATTTACAGGGCAGGAGCGAGGGAGAGGAAACGG
TCTCAAGTCGGCTTTAAATGAAGAGCCACAACCTCCATGGCACTGTGCAC
AGCCGACCCTAAGTCGACCAGGCGATTGTGACACTCAAAACCTTGACATC
TAAATCCATCACACATGATTTTGAATGCGTAGATTGCCACTCGCCGGGAC
CTGCTCGACCTCAAGACCGAGCTGAGCGAGAAACTATTCAGCAGCACCAT
GCGTTTTGACGTTGCTCAACGGCACAGCAAGGAAGTGATCGAAAAAGATC
TTATGTCCGTGCGGTACGAAGAGCAACAAGAGCAAGGGAGAGAGAGGAGG
AAAATGGCGTTGAGAAGAAGGGTCGCCTGCGTGCATTTACACGGACTTTG
TTGGTTGAAAGAGAATAAGGACTCGGATATACATATCGTAACTTGTTCAA
GAGGACTCCACCAATGACGTGCCTCCCTCCTTTTTTCCCACTCTCCCTCC
ACACCTCCCTGCTCAGGTCCGAATTTAAGGCATCCATCCATGCCGAGTAT
CAGAAGCTTGAGAAAGAAATGTCAAATGTGGAAAAGGTCCTGACCGACCG
GCATTTGACGCGGAGGGAACTCATGGAACAGCGAGTATCCGTGCTGCAGG
TCCGGAGGAAGGCGGAGAAAAGGGATGGAGGAAAGGGAGGCCTTCAATTC
TACACCATTGATCTATGGCTCATGTTTGCATGATATTATGCGTCACTCAA
ATGCTCTTCATCCCTCTTTCCATCCCTTCCTACTCCCCCTCTCGCACAGA
ACGAGATTGCCCAGGTGGAGAAGCGAGTCGTCCAATATGGTGCGGGGACG
CTTCTGTCCCTCTTGACGGTAGGCTTGGGGTTTGCCCGCTTGATGATGTG
AGGAGGGAGGGAGGGATGAGGCGAGGAGAAGTGTAAATGAAATAAGGGTA
AGATATTTGCGGGGCTGAGTGCTTCTTATTACCAGCGTGTTGCGAGCTGC
ATGCTCCAGCATAGGGAAAGAGGGCAAAGACAGATGCAAAAGGCGAAACG
TGTAAAGAGATGAGGTTGTCGAATGAAGGTGTCCATCGATGGTATTGTAA
TGGTCATTGTCAAACCTGAAAGATTTAAATAATAACCCAG
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Coding sequence (CDS) from alignment at chr28:481686..483475-

>NO28G01510.1 ID=NO28G01510.1|Name=NO28G01510.1|organism=Nannochloropsis oceanica|type=CDS|length=723bp|location=Sequence derived from alignment at chr28:481686..483475- (Nannochloropsis oceanica)
ATGCTTATCTCCGGCCGCCGGTTGCTTCAGTCGACTGCTTGCCGTCAATG
CCGCCTCGTTTCCTCCTCCTCCCCCACGCCTACCTCTACACCTCCTTCCT
CTACGCCCTCCTCGTCTGGCGTTGCCCCCCCGCTCTTCTCCACCCCCTTC
GCCTCTTCTTCCTCATCGAGCCCCTCCTTATCAACTGTGCAGACTCCGGC
CTCTGTCCTCGGCCCGGGTAAGGCGGTCGTGTCCTTTGACACCTACAAGG
TCGCCGAGTCTCTGCAAGAAGCCGGTTTTAGCAAAGGCCAAGCTGAAGCG
ATCCTACGGGTAGTCGTCGCGGGAATGGAGGAGTCCACGCTGAAAAGCAC
AGCAATGATTGCCACTCGCCGGGACCTGCTCGACCTCAAGACCGAGCTGA
GCGAGAAACTATTCAGCAGCACCATGCGTTTTGACGTTGCTCAACGGCAC
AGCAAGGAAGTGATCGAAAAAGATCTTATGTCCGTGCGGTCCGAATTTAA
GGCATCCATCCATGCCGAGTATCAGAAGCTTGAGAAAGAAATGTCAAATG
TGGAAAAGGTCCTGACCGACCGGCATTTGACGCGGAGGGAACTCATGGAA
CAGCGAGTATCCGTGCTGCAGAACGAGATTGCCCAGGTGGAGAAGCGAGT
CGTCCAATATGGTGCGGGGACGCTTCTGTCCCTCTTGACGGTAGGCTTGG
GGTTTGCCCGCTTGATGATGTGA
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Synonyms
Publications