NO28G01510, NO28G01510 (gene) Nannochloropsis oceanica

Overview
NameNO28G01510
Unique NameNO28G01510
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1790
Alignment locationchr28:481686..483475 -

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Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:481686..483475 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR024461DUF1640
Homology
BLAST of NO28G01510 vs. NCBI_GenBank
Match: XP_005854614.1 (hypothetical protein NGA_0165400, partial [Nannochloropsis gaditana CCMP526] >EKU21747.1 hypothetical protein NGA_0165400, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 149.8 bits (377), Expect = 9.400e-33
Identity = 78/100 (78.00%), Postives = 91/100 (91.00%), Query Frame = 0
Query:   64 QTPASVLGPGKAVVSFDTYKVAESLQEAGFSKGQAEAILRVVVAGMEESTLKSTAMIATRRDLLDLKTELSEKLFSSTMRFDVAQRHSKEVIEKDLMSVR 164
            Q  AS+LGPGKAVVSFDT K+ +SLQEAGFSK QA+ +LRV+VAGMEE TL+STAMIATRRDLLDLK++LSE+LF STMRFDVAQRH+KEVIE+DL S+R
Sbjct:   29 QIHASLLGPGKAVVSFDTMKMCDSLQEAGFSKAQAQTVLRVLVAGMEECTLRSTAMIATRRDLLDLKSDLSERLFGSTMRFDVAQRHNKEVIERDLQSLR 128          
BLAST of NO28G01510 vs. NCBI_GenBank
Match: EWM20651.1 (Protein of unknown function DUF1640 [Nannochloropsis gaditana])

HSP 1 Score: 149.8 bits (377), Expect = 9.400e-33
Identity = 78/100 (78.00%), Postives = 91/100 (91.00%), Query Frame = 0
Query:   64 QTPASVLGPGKAVVSFDTYKVAESLQEAGFSKGQAEAILRVVVAGMEESTLKSTAMIATRRDLLDLKTELSEKLFSSTMRFDVAQRHSKEVIEKDLMSVR 164
            Q  AS+LGPGKAVVSFDT K+ +SLQEAGFSK QA+ +LRV+VAGMEE TL+STAMIATRRDLLDLK++LSE+LF STMRFDVAQRH+KEVIE+DL S+R
Sbjct:   76 QIHASLLGPGKAVVSFDTMKMCDSLQEAGFSKAQAQTVLRVLVAGMEECTLRSTAMIATRRDLLDLKSDLSERLFGSTMRFDVAQRHNKEVIERDLQSLR 175          
BLAST of NO28G01510 vs. NCBI_GenBank
Match: POM72810.1 (Hypothetical protein PHPALM_10419, partial [Phytophthora palmivora var. palmivora])

HSP 1 Score: 84.3 bits (207), Expect = 4.900e-13
Identity = 40/87 (45.98%), Postives = 68/87 (78.16%), Query Frame = 0
Query:   79 FDTYKVAESLQEAGFSKGQAEAILRVVVAGMEESTLKSTAMIATRRDLLDLKTELSEKLFSSTMRFDVAQRHSKEVIEKDLMSVRYE 166
            FDT+ V +SLQE GF+ GQ+EAIL+V+   M +S    + ++AT+ + ++LK ELSE++F+ST++FD+AQRHS+E++E+D  +++ +
Sbjct:   83 FDTHNVVKSLQENGFTAGQSEAILQVMKDAMADSLEAQSRILATKSEHVELKAELSERVFNSTLKFDIAQRHSRELLERDFNTLKQD 169          
BLAST of NO28G01510 vs. NCBI_GenBank
Match: XP_008891638.1 (hypothetical protein, variant [Phytophthora parasitica INRA-310] >ETI50186.1 hypothetical protein, variant [Phytophthora parasitica P1569] >ETK90069.1 hypothetical protein, variant [Phytophthora parasitica] >ETL43466.1 hypothetical protein, variant [Phytophthora parasitica] >ETL96649.1 hypothetical protein, variant [Phytophthora parasitica] >ETM49794.1 hypothetical protein, variant [Phytophthora parasitica] >ETN22374.1 hypothetical protein, variant [Phytophthora parasitica INRA-310] >ETO78909.1 hypothetical protein, variant [Phytophthora parasitica P1976] >ETP19950.1 hypothetical protein, variant [Phytophthora parasitica CJ01A1] >ETP47893.1 hypothetical protein, variant [Phytophthora parasitica P10297] >KUF78457.1 hypothetical protein AM587_10007003 [Phytophthora nicotianae])

HSP 1 Score: 82.0 bits (201), Expect = 2.400e-12
Identity = 39/87 (44.83%), Postives = 67/87 (77.01%), Query Frame = 0
Query:   79 FDTYKVAESLQEAGFSKGQAEAILRVVVAGMEESTLKSTAMIATRRDLLDLKTELSEKLFSSTMRFDVAQRHSKEVIEKDLMSVRYE 166
            FDT+ V +SLQ+ GFS  Q+EAIL+V+   M +S    + ++AT+ + ++LK ELSE++F+ST++FD+AQRHS+E++E+D  +++ +
Sbjct:   79 FDTHNVVKSLQDKGFSPDQSEAILQVMKDAMADSLEAQSRILATKSEHVELKAELSERVFNSTLKFDIAQRHSRELLERDFNTLKQD 165          
BLAST of NO28G01510 vs. NCBI_GenBank
Match: XP_024574894.1 (Uncharacterized membrane protein [Plasmopara halstedii] >CEG38525.1 Uncharacterized membrane protein [Plasmopara halstedii])

HSP 1 Score: 82.0 bits (201), Expect = 2.400e-12
Identity = 40/87 (45.98%), Postives = 66/87 (75.86%), Query Frame = 0
Query:   79 FDTYKVAESLQEAGFSKGQAEAILRVVVAGMEESTLKSTAMIATRRDLLDLKTELSEKLFSSTMRFDVAQRHSKEVIEKDLMSVRYE 166
            FDT+ V +SLQE GFS  Q+EAIL V+   M +S +    ++AT+ + ++LK ELSE++F+ST++FD+AQRHS+E++E+D  +++ +
Sbjct:   54 FDTHHVVQSLQEKGFSIQQSEAILDVMKDAMADSLVAQARILATKSEHVELKAELSERVFNSTLKFDIAQRHSRELLERDFNTLKQD 140          
BLAST of NO28G01510 vs. NCBI_GenBank
Match: XP_009519371.1 (hypothetical protein PHYSODRAFT_478596 [Phytophthora sojae] >EGZ24083.1 hypothetical protein PHYSODRAFT_478596 [Phytophthora sojae])

HSP 1 Score: 81.6 bits (200), Expect = 3.200e-12
Identity = 40/91 (43.96%), Postives = 68/91 (74.73%), Query Frame = 0
Query:   75 AVVSFDTYKVAESLQEAGFSKGQAEAILRVVVAGMEESTLKSTAMIATRRDLLDLKTELSEKLFSSTMRFDVAQRHSKEVIEKDLMSVRYE 166
            A + FDT+ V +SLQE GF+  Q+EAIL+V+   M  S    + ++AT+ + ++LK ELSE++F+ST++FD+AQRHS+E++E+D  +++ +
Sbjct:   23 APLHFDTHNVVKSLQERGFTVDQSEAILQVMKEAMAASLEAQSRILATKSEHVELKAELSERVFNSTLKFDIAQRHSRELLERDFNTLKQD 113          
BLAST of NO28G01510 vs. NCBI_GenBank
Match: XP_002901824.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY57214.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 81.6 bits (200), Expect = 3.200e-12
Identity = 39/87 (44.83%), Postives = 66/87 (75.86%), Query Frame = 0
Query:   79 FDTYKVAESLQEAGFSKGQAEAILRVVVAGMEESTLKSTAMIATRRDLLDLKTELSEKLFSSTMRFDVAQRHSKEVIEKDLMSVRYE 166
            FDT+ V +SLQ+ GFS  Q+EAIL V+   M +S    + ++AT+ + ++LK ELSE++F+ST++FD+AQRHS+E++E+D  +++ +
Sbjct:   82 FDTHNVVKSLQDRGFSTDQSEAILHVMKDAMADSLEAQSRILATKSEHVELKAELSERVFNSTLKFDIAQRHSRELLERDFNTLKQD 168          
BLAST of NO28G01510 vs. NCBI_GenBank
Match: GAX94049.1 (NADH dehydrogenase [Pythium insidiosum])

HSP 1 Score: 79.0 bits (193), Expect = 2.000e-11
Identity = 40/85 (47.06%), Postives = 61/85 (71.76%), Query Frame = 0
Query:   79 FDTYKVAESLQEAGFSKGQAEAILRVVVAGMEESTLKSTAMIATRRDLLDLKTELSEKLFSSTMRFDVAQRHSKEVIEKDLMSVR 164
            FDT+ V   LQE GFS  QAEAIL V+   M ES      ++AT+ + ++LK ELSE++F+ST++FD+AQRH +E++E+D  +++
Sbjct:  410 FDTHHVVRRLQEHGFSPEQAEAILEVMKDSMAESLDAQARVLATKSEHVELKAELSERVFNSTLKFDIAQRHMRELLERDFNNLK 494          
BLAST of NO28G01510 vs. NCBI_GenBank
Match: CCA23607.1 (conserved hypothetical protein [Albugo laibachii Nc14] >CCA24158.1 conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 78.6 bits (192), Expect = 2.700e-11
Identity = 37/89 (41.57%), Postives = 63/89 (70.79%), Query Frame = 0
Query:   75 AVVSFDTYKVAESLQEAGFSKGQAEAILRVVVAGMEESTLKSTAMIATRRDLLDLKTELSEKLFSSTMRFDVAQRHSKEVIEKDLMSVR 164
            A ++FDT++V + LQE GF   QAE IL V+   M +S      ++AT+ + + L+ ELSE++F+ST++FD+AQRH +E++E+D  +++
Sbjct:  127 AALTFDTHRVVKRLQEEGFPPSQAEGILEVIKDSMSDSLEMQARILATKAEHVQLRAELSERVFNSTLKFDIAQRHMRELLERDFNNLK 215          
BLAST of NO28G01510 vs. NCBI_GenBank
Match: CCI49709.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 77.8 bits (190), Expect = 4.600e-11
Identity = 37/89 (41.57%), Postives = 63/89 (70.79%), Query Frame = 0
Query:   75 AVVSFDTYKVAESLQEAGFSKGQAEAILRVVVAGMEESTLKSTAMIATRRDLLDLKTELSEKLFSSTMRFDVAQRHSKEVIEKDLMSVR 164
            A ++FDT++V + LQE GF   QAE IL V+   M +S      ++AT+ + + L+ ELSE++F+ST++FD+AQRH +E++E+D  +++
Sbjct:    5 AALTFDTHRVVKRLQEEGFPPRQAEGILEVIKDSMSDSLEMQARILATKAEHVQLRAELSERVFNSTLKFDIAQRHMRELLERDFNNLK 93          
The following BLAST results are available for this feature:
BLAST of NO28G01510 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005854614.19.400e-3378.00hypothetical protein NGA_0165400, partial [Nannoch... [more]
EWM20651.19.400e-3378.00Protein of unknown function DUF1640 [Nannochlorops... [more]
POM72810.14.900e-1345.98Hypothetical protein PHPALM_10419, partial [Phytop... [more]
XP_008891638.12.400e-1244.83hypothetical protein, variant [Phytophthora parasi... [more]
XP_024574894.12.400e-1245.98Uncharacterized membrane protein [Plasmopara halst... [more]
XP_009519371.13.200e-1243.96hypothetical protein PHYSODRAFT_478596 [Phytophtho... [more]
XP_002901824.13.200e-1244.83conserved hypothetical protein [Phytophthora infes... [more]
GAX94049.12.000e-1147.06NADH dehydrogenase [Pythium insidiosum][more]
CCA23607.12.700e-1141.57conserved hypothetical protein [Albugo laibachii N... [more]
CCI49709.14.600e-1141.57unnamed protein product [Albugo candida][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR065ncniR065Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR101ngnoR101Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO28G01510.2NO28G01510.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO28G01510.1NO28G01510.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|633855gene_9884Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_101145g1gene9754Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO28G01510.2NO28G01510.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO28G01510.1NO28G01510.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO28G01510 ID=NO28G01510|Name=NO28G01510|organism=Nannochloropsis oceanica|type=gene|length=1790bp
ACCCCAGTGTTGTACAACTCCTACCTCCCTCTCGGAGACGTCCCACCACC
CTTCGTATACCCTGATTCCACCTGGATACACGGCCCGATTCAGGCAAAAT
GCTTATCTCCGGCCGCCGGTTGCTTCAGTCGACTGCTTGCCGTCAATGCC
GCCTCGTTTCCTCCTCCTCCCCCACGCCTACCTCTACACCTCCTTCCTCT
ACGCCCTCCTCGTCTGGCGTTGCCCCCCCGCTCTTCTCCACCCCCTTCGC
CTCTTCTTCCTCATCGAGCCCCTCCTTATCAACTGTGCAGACTCCGGCCT
CTGTCCTCGGCCCGGGTAAGGCGGTCGTGTCCTTTGACACCTACAAGgtg
aggaagagacgatacatgcctttatcatcttcataccttccccttcccta
cctttccaccttacttcctacattctgccttgacagtcttgagcgatacg
aatgcttgcttctttaatgccttatcctccctaattgtattcgatcttgt
ctcctgtcctccctcctctcatgcgccgccctagGTCGCCGAGTCTCTGC
AAGAAGCCGGTTTTAGCAAAGGCCAAGCTGAAGCGATCCTACGGGTAGTC
GTCGCGGGAATGGAGGAGTCCACGCTGAAAAGCACAGCAATGgtacgtag
gggtgaacgaggaaaggatttacagggcaggagcgagggagaggaaacgg
tctcaagtcggctttaaatgaagagccacaacctccatggcactgtgcac
agccgaccctaagtcgaccaggcgattgtgacactcaaaaccttgacatc
taaatccatcacacatgattttgaatgcgtagATTGCCACTCGCCGGGAC
CTGCTCGACCTCAAGACCGAGCTGAGCGAGAAACTATTCAGCAGCACCAT
GCGTTTTGACGTTGCTCAACGGCACAGCAAGGAAGTGATCGAAAAAGATC
TTATGTCCGTGCGgtacgaagagcaacaagagcaagggagagagaggagg
aaaatggcgttgagaagaagggtcgcctgcgtgcatttacacggactttg
ttggttgaaagagaataaggactcggatatacatatcgtaacttgttcaa
gaggactccaccaatgacgtgcctccctccttttttcccactctccctcc
acacctccctgctcagGTCCGAATTTAAGGCATCCATCCATGCCGAGTAT
CAGAAGCTTGAGAAAGAAATGTCAAATGTGGAAAAGGTCCTGACCGACCG
GCATTTGACGCGGAGGGAACTCATGGAACAGCGAGTATCCGTGCTGCAGg
tccggaggaaggcggagaaaagggatggaggaaagggaggccttcaattc
tacaccattgatctatggctcatgtttgcatgatattatgcgtcactcaa
atgctcttcatccctctttccatcccttcctactccccctctcgcacagA
ACGAGATTGCCCAGGTGGAGAAGCGAGTCGTCCAATATGGTGCGGGGACG
CTTCTGTCCCTCTTGACGGTAGGCTTGGGGTTTGCCCGCTTGATGATGTG
AGGAGGGAGGGAGGGATGAGGCGAGGAGAAGTGTAAATGAAATAAGGGTA
AGATATTTGCGGGGCTGAGTGCTTCTTATTACCAGCGTGTTGCGAGCTGC
ATGCTCCAGCATAGGGAAAGAGGGCAAAGACAGATGCAAAAGGCGAAACG
TGTAAAGAGATGAGGTTGTCGAATGAAGGTGTCCATCGATGGTATTGTAA
TGGTCATTGTCAAACCTGAAAGATTTAAATAATAACCCAG
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protein sequence of NO28G01510.2

>NO28G01510.2-protein ID=NO28G01510.2-protein|Name=NO28G01510.2|organism=Nannochloropsis oceanica|type=polypeptide|length=214bp
MLISGRRLLQSTACRQCRLVSSSSPTPTSTPPSSTPSSSGVAPPLFSTPF
ASSSSSSPSLSTVQTPASVLGPGKAVVSFDTYKVAESLQEAGFSKGQAEA
ILRVVVAGMEESTLKSTAMIATRRDLLDLKTELSEKLFSSTMRFDVAQRH
SKEVIEKDLMSVRYEEQQEQGRERRKMALRRRVACVHLHGLCWLKENKDS
DIHIVTCSRGLHQ*
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protein sequence of NO28G01510.1

>NO28G01510.1-protein ID=NO28G01510.1-protein|Name=NO28G01510.1|organism=Nannochloropsis oceanica|type=polypeptide|length=241bp
MLISGRRLLQSTACRQCRLVSSSSPTPTSTPPSSTPSSSGVAPPLFSTPF
ASSSSSSPSLSTVQTPASVLGPGKAVVSFDTYKVAESLQEAGFSKGQAEA
ILRVVVAGMEESTLKSTAMIATRRDLLDLKTELSEKLFSSTMRFDVAQRH
SKEVIEKDLMSVRSEFKASIHAEYQKLEKEMSNVEKVLTDRHLTRRELME
QRVSVLQNEIAQVEKRVVQYGAGTLLSLLTVGLGFARLMM*
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Synonyms
Publications