NO28G01280, NO28G01280 (gene) Nannochloropsis oceanica

Overview
NameNO28G01280
Unique NameNO28G01280
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2329
Alignment locationchr28:400916..403244 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:400916..403244 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO28G01280 vs. NCBI_GenBank
Match: EWM20856.1 (hypothetical protein Naga_100164g2 [Nannochloropsis gaditana])

HSP 1 Score: 144.4 bits (363), Expect = 3.900e-31
Identity = 79/169 (46.75%), Postives = 107/169 (63.31%), Query Frame = 0 
Query:   44 SKAQIRASKRGCVLKFYPLKPKTPWPTTASPDQTYRLAFKLINRSKKAGSDFKSVWLGIQKPPGANFTGSFRARPALPDATFFPNF-PNQFVPLFLWGPFDVPPRRKQYIDFEYTLPVCSPGIAWNITVNLSPTINTGFQRVPPFTGACGT--GYSYRRQYYSKRNIPC 210
            ++A+ R  K+GC+LKFYP  PK  WPTTAS D  YRLA  ++ R++K GS +K+V+   QKP  A++ G  RA+PALP AT  P F P+ +   +L+GPF+V   R+QY++  YTL  CSPGI WN+T ++ P +   FQR PP      T   Y+Y RQY  K   PC
Sbjct:   35 TRAERRERKKGCILKFYPKNPKEAWPTTASSDGVYRLA--VVIRNRKRGSLYKNVYFSFQKPATASWAGEPRAKPALPGATLIPPFLPSAW---WLYGPFNVSGGRRQYVEIAYTLSACSPGIIWNVTTSIVP-VPPFFQR-PPSEALPATCLAYAYGRQYAGK--TPC 194
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BLAST of NO28G01280 vs. NCBI_GenBank
Match: XP_005853755.1 (hypothetical protein NGA_0476301 [Nannochloropsis gaditana CCMP526] >EKU22607.1 hypothetical protein NGA_0476301 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 142.9 bits (359), Expect = 1.100e-30
Identity = 85/203 (41.87%), Postives = 116/203 (57.14%), Query Frame = 0 
Query:   10 PLFLLLVSPTTNLAAERDLFTSDKDRKANDSALPSKAQIRASKRGCVLKFYPLKPKTPWPTTASPDQTYRLAFKLINRSKKAGSDFKSVWLGIQKPPGANFTGSFRARPALPDATFFPNF-PNQFVPLFLWGPFDVPPRRKQYIDFEYTLPVCSPGIAWNITVNLSPTINTGFQRVPPFTGACGT--GYSYRRQYYSKRNIPC 210
            PL  +L+     +      F   K  K       ++A+ R  K+GC+LKFYP  PK  WPTTAS D  YRLA  ++ R++K GS +K+V+   QKP  A++ G  RA+PALP AT  P F P+ +   +L+GPF+V   R+QY++  YTL  CSPGI WN+T ++ P +   FQR PP      T   Y+Y RQY  K   PC
Sbjct:    7 PLSSILLXXXXXVLMHSPAFAGSKRNKV------TRAERRERKKGCILKFYPKNPKEAWPTTASSDGVYRLA--VVIRNRKRGSLYKNVYFSFQKPATASWAGEPRAKPALPGATLIPPFLPSAW---WLYGPFNVSGGRRQYVEIAYTLSACSPGIIWNVTTSIVP-VPPFFQR-PPSEALPATCLAYAYGRQYAGK--TPC 194
The following BLAST results are available for this feature:
BLAST of NO28G01280 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM20856.13.900e-3146.75hypothetical protein Naga_100164g2 [Nannochloropsi... [more]
XP_005853755.11.100e-3041.87hypothetical protein NGA_0476301 [Nannochloropsis ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL059nonsL059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR065ncniR065Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR094ngnoR094Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004938NSK004938Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO28G01280.1NO28G01280.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609376gene_9858Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100164g2gene9554Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO28G01280.1NO28G01280.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO28G01280 ID=NO28G01280|Name=NO28G01280|organism=Nannochloropsis oceanica|type=gene|length=2329bp
AGTCCCTGAAAAAGTTATAAATGCCTTTTGATTACGAATTTTACGATCTG
ACTAAGTTTCGTCTGCAGCGTTAGTGCTTGATCACAGGACAGGACGAATG
ACGAATGAAGTGCTTGAAGTATTCATTCAAGTGAACGACGTGCTTCCCGT
CCGACGTGAACGGGTGCAACATTTTTGAAAAGTTGGTAATGTCCCATTAG
TTCACACCCCTTTCGTGTGGCATGCTCCTTCCCACTAGACAACGAGATGG
GATATGACTCTCGGCCTTACCTTTGGCAAGACACGGCTGCTGCTGTTGGC
TAGCCACGTTGAGATTCACTCGACGAGCGTACGAGCTCCTAGCCTCTCGC
CGTGCCACCGAGTCAACGACACACATAAAGAAACATGGATGCCAGTCGTG
TCATATCGGAATGTCGACATCTATTTTCTCATCTCAGGCTACCCATCCCT
GACTGCCATGCTGCCTACCCTCAATCCCCTCGCGATCGTCCACCACTCAC
ACGGCCCCCTTCTCCCCCCTTCCTCCTCACTCCCTACAACCGGACAGCAG
CACCATGCGTGCCGCCCTCCATCTCCTCTTTCCGCTCTTCCTCCTTCTTG
TCTCCCCAACCACCAACCTGGCTGCTGAACGGGATCTCTTTACCAGCGAC
AAAGACAGGAAGGCAAATGACTCCGCCCTCCCATCCAAGGCCCAAATCAG
GGCATCCAAGAGAGGCTGCGTTCTCAAGTTCTACCCTCTGAAGCCCAAGA
CACCCTGGCCTACCACGGCCAGCCCTGATCAAACGTACCGTTTGGCCTTC
AAATTGATCAATCGCAGCAAGAAAGCGGGGTCGGACTTTAAGAGTGTTTG
GCTAGGCATTCAAAAGCCTCCCGGCGCAAACTTTACAGGAAGCTTCCGTG
CCAGGCCTGCCCTACCCGATGCGACCTTCTTCCCCAATTTTCCCAATCAA
TTCGTCCCTCTCTTCCTCTGGGGACCTTTCGACGTGCCTCCCCGGAGGAA
GCAATACATCGATTTTGAGTATACCCTCCCGGTGTGCTCGCCGGGGATAG
CCTGGAATATTACGGTGAATCTCTCTCCGACCATTAATACGGGCTTTCAA
CGCGTCCCTCCCTTCACAGGGGCGTGTGGCACGGGCTACAGTTATCGGgt
acgttcgaggaaaagaatgggagggtggtaaggaaagaagtaggatgcgt
gggagggaggagggagggagggagagaaggatggagagggggatggagag
ggggatggagggagagagggagagaggcacggatgagtgtcatttccgtg
gtctcttttgatgtttctctattgtctctctgtgtgtgtggtatgggcta
tagatcgagcagacctcataagtttcaggtcctgcatccccgccctgtcc
tccctccctccctccctccctccctccttccctcctttcaccacctgcac
tttttccctgtttttctctgccccggacgtggacttttttttccaatctg
ttggtagggcatgcattccgatcaaaagccttacatcatgatatagctca
tctgcccttccctccctccttcccttccttccttcctttcctctctttcc
tttcctttctttctccccacatttacacttatgactcaccctcccctccc
ttcctcccttcctccttccctctttcactcctttcattaacagCGCCAGT
ACTACAGCAAAAGAAACATCCCATGCACCTAAAGCGGATGCTAGGAGGGT
AAGAGGGAGGGAAGAGGAAGCAGCAGCAGAGTTAAGGACTCGTTTTTCAA
GGGGGAAGGTAGGCGGCCCTTAGGAGGGGCGTTTGTATAAGCGGGAGACT
GCTTATCGTACTCATGCATCGATGTGGTTGTGTAAACGTATGGGTGCACG
AGAGAGAGAGAGGAGTATTCTGAAGTGGCGCAAGTGCGCGTGCTTGCATG
AAAGAGGAGGATCATGGGGAAAAGGCAGTGACTGGGTTGAGGGCGTTGTT
TATATATCTAGTGTGATTGAAACTGTGTTTTAAAAGTACCCTTTTTCGTA
GTTCCCCATGTCAGCTTTCAGCCGCCAGTAAAAGAATGTAGAAGTATTGA
AAAATCACCCACCGACTGCCTATCTAAAAGATAAAGAGAAGAGTGTAAAG
AAAAAGATGAGGAGCTGAGGGAGGGAAGGAAGGGAATGCGGGACCATGGA
AAGCTTCATGCGAAATCTGACTGTGGTACTTCCTGTCCTATCACTCCTGC
CCTTCTTTCGACAAACACAATTTATGCCCTACCGATCCTCCTACTCTCCT
TTTTTCTCTCCCCATATTCCCTTTCCCCG
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protein sequence of NO28G01280.1

>NO28G01280.1-protein ID=NO28G01280.1-protein|Name=NO28G01280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=211bp
MRAALHLLFPLFLLLVSPTTNLAAERDLFTSDKDRKANDSALPSKAQIRA
SKRGCVLKFYPLKPKTPWPTTASPDQTYRLAFKLINRSKKAGSDFKSVWL
GIQKPPGANFTGSFRARPALPDATFFPNFPNQFVPLFLWGPFDVPPRRKQ
YIDFEYTLPVCSPGIAWNITVNLSPTINTGFQRVPPFTGACGTGYSYRRQ
YYSKRNIPCT*
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Synonyms
Publications