NO28G01270.1, NO28G01270.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO28G01270.1
Unique NameNO28G01270.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3863
Alignment locationchr28:396142..400587 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:396142..400587 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO28G01270.1 vs.
Match: XP_005853754.1 (hypothetical protein NGA_0476201 [Nannochloropsis gaditana CCMP526]; EKU22606.1 hypothetical protein NGA_0476201 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 467.6 bits (1202), Expect = 1.100e-127
Identity = 257/486 (52.88%), Postives = 319/486 (65.64%), Query Frame = 0
Query:   41 VQPAPAPSKPSPPPLTLSSSTSWS--WQKKLAFATLVLVCVGLVAAFVPRSNQSASSPLLNQPHAVLDYQAGRIPALTATSPPTSEAPAIASVPIALKASATTTSG----SSTPA--TKAKDLI--TSALLTGGLQQQQQAGALSPPGGVCFASDMPELLKALESDSGCTIINLIIFADDSNEENDND--------TAFVFKNEVLVSRRVIIQGNSVMLPLLDCSSSNRCFRVLAGGYLELRYLRINQSRLGELRPANPLFEGITPTGMVREYRGSSAYFEPGAAGGRFLGVYFDDDQSDEFEWMLEENLAVTSFRIYGGYIFMAGGRLEFDFCFFWDFEFITPLDRIYVGGDVLVLAGEVSFTGCVWVYTTFFGVENGAGFNIALLGGVATYTLCEFAEVNGFLTMNGVGQAFLVAGGVQVLTGCSFTYFTVSAFFSGTGETTVLGGAQIAVGVSLFDTYTMLASFGAGLDYCVCAGLMVHIGA 509
            VQ +  P  P+   L+   S  ++  W++K   A +VL+ + +  A V     S +   +  P    +  +  IP L       S   A  +  + L AS    +G      TPA  T  K+L   T   L+      QQ GA   P   CF  DM EL +AL  DS CT+I L+  +       D +        T FVF++E+LVS+RVIIQGNSV+LP LDCS S RCFRV+ GGYLELRY+RINQS  G LRP NPL+EG T TGMVREYRGSS YFEPGA GGRFLGVYFDDDQSDE +W++E++ A+TSFRIYGG++FMAGGRL+F+ C F+DFEF+TPLDRIY+GGDVLVLAGEVSFTGCVW Y TF G ENGAGFN+A+LGGVA YT C+F E+NG + MNG GQ+F VAGGVQVLTG S TY T    FSGTGE +V+ G QI  G+ L D Y +LA++G GLDYC+  G+MVH+ +
Sbjct:   24 VQNSQHPPPPTSKTLSEPESRKYAATWRRKRTLALIVLMGMAITVAVVLVKRFSGAESDIQSPGPG-EQSSTAIPGLHDVIQNLSGGQAAIATDMPLPASTDDETGVTFSKETPAILTTPKNLFSQTKDFLSSAPLANQQKGAAVTPDAACFVGDMEELAEALADDSECTVITLVSTSSRDGVSGDGNSIPSAAAQTPFVFRDEILVSKRVIIQGNSVLLPFLDCSQSIRCFRVMDGGYLELRYVRINQSDKGVLRPVNPLYEGFTVTGMVREYRGSSVYFEPGATGGRFLGVYFDDDQSDETDWIVEQSFALTSFRIYGGFVFMAGGRLQFELCLFYDFEFVTPLDRIYLGGDVLVLAGEVSFTGCVWAYITFLGFENGAGFNVAMLGGVAIYTFCQFFELNGAIAMNGAGQSFFVAGGVQVLTGVSLTYQTAVGLFSGTGEMSVMAGVQIVTGLHLLDVYGVLAAYGTGLDYCLFEGVMVHLAS 508          
The following BLAST results are available for this feature:
BLAST of NO28G01270.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853754.11.100e-12752.88hypothetical protein NGA_0476201 [Nannochloropsis ... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO28G01270NO28G01270Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO28G01270.1NO28G01270.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO28G01270.1.cds1NO28G01270.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G01270.1.cds2NO28G01270.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G01270.1.cds3NO28G01270.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G01270.1.cds4NO28G01270.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G01270.1.cds5NO28G01270.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO28G01270.1 ID=NO28G01270.1|Name=NO28G01270.1|organism=Nannochloropsis oceanica|type=mRNA|length=3863bp
AGACAGACGGCAAATATAGGGGGCTTGTGGTCAGACACACACACACACCA
CCACAACCATGCCTCCGCCTGAAGCGGGCAACCCGGCATGGCAGTCGGCG
CGTCTCCGCAGCATCAGCAGCATCCGTGATGATGAGCAAAACAAGGCACG
CGACGCTCCGCCGTGTGAGATTCTGGATGTACAACCAGCACCAGCGCCAT
CAAAACCATCACCGCCACCATTGACGCTATCAAGTAGCACCAGCTGGTCG
TGGCAGAAAAAGCTAGCATTTGCGACACTAGTCTTGGTATGTGTCGGGCT
GGTCGCTGCCTTCGTTCCGAGATCAAATCAAAGCGCTTCCTCTCCGCTAC
TAAACCAACCACACGCGGTCCTAGACTACCAAGCTGGCCGGATCCCTGCT
TTAACGGCCACGAGTCCACCGACTTCGGAAGCGCCAGCAATCGCAAGTGT
CCCAATCGCGCTAAAAGCTTCGGCGACTACCACTTCGGGCTCGTCGACTC
CTGCAACCAAGGCTAAAGATCTCATCACCTCTGCGCTTTTGACCGGGGGC
CTCCAACAGCAACAGCAGGCAGGAGCTTTATCGCCGCCTGGGGGCGTATG
CTTTGCAAGCGACATGCCCGAGTTATTGAAAGCCCTGGAAAGTGATTCGG
GCTGCACCATCATCAATCTGATAATATTTGCGGACGACAGCAACGAAGAG
AACGATAATGACACGGCTTTTGTTTTTAAGAATGAAGTATTAGTTTCCAG
GCGAGTCATAATTCAAGGCAACAGTGTGATGCTCCCGCTCTTGGATTGCA
GCTCATCGAATCGGTGCTTCCGAGTCCTGGCCGGTGGGTATCTAGAGCTG
CGATACTTGCGCATCAATCAATCAAGATTAGGAGAGTTGCGCCCTGCGAA
TCCTCTTTTTGAAGGAATAACGCCCACGGGGATGGTAAGAGAATACCGGG
GGAGCAGTGCCTATTTTGAACCCGGGGCAGCAGGCGGTCGATTCTTGGGC
GTTTATTTCGATGATGATCAGAGCGACGAGTTTGAGTGGATGCTGGAGGA
GAACTTGGCGGTGACGAGTTTTCGCATATACGGCGGCTACATTTTTATGG
CTGGTGGACGGTTGGAATTCGACTTCTGCTTTTTTTGGGATTTTGAGTTC
ATAACACCCTTGGATAGGATCTACGTGGGCGGGGACGTTTTGGTCTTGGC
GGGCGAAGTGAGCTTCACGGGCTGTGTCTGGGTTTATACGACCTTTTTTG
GTGTTGAGAATGGCGCGGGGTTCAACATCGCCCTTTTAGGCGGCGTAGCC
ACATACACGCTTTGTGAGTTTGCGGAAGTCAATGGATTTCTAACCATGAA
CGGCGTCGGACAGGCCTTTCTTGTTGCTGGAGGGGTTCAAGTTCTCACGG
GCTGCTCTTTTACTTACTTCACCGTCTCTGCTTTCTTTTCCGGGACCGGG
GAAACGACTGTGTTGGGGGGTGCTCAGATCGCAGTGGGAGTGAGTTTATT
TGATACCTATACCATGCTTGCATCGTTCGGCGCGGGTTTAGATTACTGTG
TCTGTGCAGGATTAATGGTTCATATTGGCGCGGCGATCAACGAGTACTCG
GGGCCTATTGCGGCGAGTATGATGGGGGGCTATACCTACCTGGGAACAGG
GACGTATGTGGGGATTGGCTCACCCGCTATAAGCACCGTGACGACGATTC
AGGAGGCAGGCGTTGGCGGCACCTATTGCAATGTTGCGGGAATCAGCACT
TTTATTGGATGTACCATCATGGAATTTACCGGCATCGCGGCTGGAAATGT
CCTCGGAGAATTTGTGGCCGTTGGAACTGGTCTGCTCATCTGGATCGGAA
GTCCCTTCATCGAGTACAGCGGGATAGAGTTTTTCAAAGGCCTGGGAGGA
ACTATTTTCGTCGGCGCTGGCGCCGCTGTCCTAGGTTACTCTCCTCTAGT
GGAGGCCCTAGGCTTACAGAACCACCACAAAGACTTTTGGATTCAAGGGA
GTTGCGAAGAATATGAGGGGGCGTGGGCACCGGGGCCGGTGTTTTTCGTG
ACGGGCGGTGAGGGAAGATGCCAAGATTTCGAGACGACCCCTCCGCCGCG
AAGGAGGAAAGAAAGGGAGGAGGAGGAGGAGGAAAGAGCGAGGGAAGATG
GAGTGGATGCGCTGGGGTTGGGGATTTTGGGGGAGGAGAACAGACAATTT
TTTAATTCCTTGTTTCGAAACAGTGTGGAAAATGAGGTGAAGGGTGGAAG
GAGGAAGAGACATCTTTCTTCATCTTTCCTCGACTATCAGTCCTCGTACC
CTCAGTCAAAAGGAGGAGTAAAGGCAGAGGAAGAGAAGGGCATGAGTATC
TGGATCCACCACTCGGAAACGCGGCAGATGAACTTTACCGACTCCAAGAT
GAGACAGCTTATGGTAGAGGAATATAGCGTCCCTCCTTTCATCCTCCTTG
CCGCCGAGGCAATGCAGCTGGCAGTGCAGCGAGGCATCGAGGGGGAAGAA
AAAGGGAAGGAGGGAAGGAGGGAGGGGGGGATGTATCTAGTGAGTCCGCC
GAGTGGAAGTTGTCGAGTGTGTGGGATCGAAAATGTGGAGGGGCCCGGTG
CCAAGGCCTGTGTGGTGGATGAGGAATGCAAGGAGGAGGGATGGGGAGGG
AGGATTTTAGGGCAGGAGAAGGAGGAGGAGGGAGAGAAGGAGGAGGAGGA
GGAGGAGAGTGAGTGGTTTTCGAACACATTTCCCTCATTTTCGTCCTCGT
CCTCGTCTTCGTCCTCGTCGTTTGTGGAGTACAAGGAGCAGTTTATCATA
CTTGGAGACGTGCACACAACGAGTAGCAGCAGCAGCAACCCTCCCTCTCC
CCCTCCCTCCTTTAACACCTCTGCCTTAGTCGAAGCCGCATTCCGTCAGG
CCCTTCTCTCAATCCTTTCCTCCCTCGATTCCCGCCCGCAGTCTCTTCAG
CTCAGCGTTTGGTCTGCCGAGCCCGATGCTTTCTTCGCTCCATCCCCCCC
TCCCTCTCCCCTCTCCTCGTCCATGTACAAATTTATCGTCATTGCCACCG
ACAGAGACAACGCCACAGCCATCGTAGATGCCCTCTCCTTCTCCTCGTCT
TCCTTCTCCTCGCCCTCTCTCCCTTCTTCTTTCTCCTCCCTTCCCTCCTT
CCCCGAGGCCGTACTCGCTTTTATACAGGAGAAAGAGAGGGAGGAAGGGG
TGGAAGGAGGGATAGGACAGGTGGAGTTGGCAGTAGAAAAGACGATGCAC
ATCCCAGCCTATAATTCAAAAGGGTTTCTGCAGCAGCAGCAGACATGGAA
AGAGGGATGGAGGGAGGGAGGGAAGGGAGGTGGCCGTAGAACCACTGCGT
GGGCTGAGGGGGGGGGGAGGGAGGGAGGGAGGACGAGTTTTTTTTTCCCG
TGTCTCTGAGAGATCCTTCCCTCCCTGCTTTGCCTGTGACGCACCTCACC
TATGACCACCCTTATTCCCTGTGTTTGCGTGGATTTTCTCAATCAGAGTC
AGTCAAATTGCAGTTGCTGTTGAGTAGTGGCGGGAGAGAGGAGGGGAAGG
AGGGGGAGGTGCGAGTGTTGGGTAAGGTTCTGATGGATGCTGGGGGCCAC
TGCGGGGAGAAAAGGCAGACCGTAATCTTTGTTGAGGACAAGGAGGAGGA
AGGGAGGAAGGAAGGAGGGAAGGGCGTGATTGTTGTGCAGGTGCCTGCAG
GGGAAGTTTCTTTCGCGTTGCAGGCTGTGGATGCTTCGACGGGAGGGATG
GGTTTCTCGCCTTTGATGGTGGTTTCGAAGGAGGGGAGGAAGAGGCGGTT
GTATGGGCCGTTGGTGGAGTTTTAGAGAGGGAATAATATCTGCTTTAAGT
TGGGGGCCACCGA
back to top

protein sequence of NO28G01270.1

>NO28G01270.1-protein ID=NO28G01270.1-protein|Name=NO28G01270.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1117bp
MPPPEAGNPAWQSARLRSISSIRDDEQNKARDAPPCEILDVQPAPAPSKP
SPPPLTLSSSTSWSWQKKLAFATLVLVCVGLVAAFVPRSNQSASSPLLNQ
PHAVLDYQAGRIPALTATSPPTSEAPAIASVPIALKASATTTSGSSTPAT
KAKDLITSALLTGGLQQQQQAGALSPPGGVCFASDMPELLKALESDSGCT
IINLIIFADDSNEENDNDTAFVFKNEVLVSRRVIIQGNSVMLPLLDCSSS
NRCFRVLAGGYLELRYLRINQSRLGELRPANPLFEGITPTGMVREYRGSS
AYFEPGAAGGRFLGVYFDDDQSDEFEWMLEENLAVTSFRIYGGYIFMAGG
RLEFDFCFFWDFEFITPLDRIYVGGDVLVLAGEVSFTGCVWVYTTFFGVE
NGAGFNIALLGGVATYTLCEFAEVNGFLTMNGVGQAFLVAGGVQVLTGCS
FTYFTVSAFFSGTGETTVLGGAQIAVGVSLFDTYTMLASFGAGLDYCVCA
GLMVHIGAAINEYSGPIAASMMGGYTYLGTGTYVGIGSPAISTVTTIQEA
GVGGTYCNVAGISTFIGCTIMEFTGIAAGNVLGEFVAVGTGLLIWIGSPF
IEYSGIEFFKGLGGTIFVGAGAAVLGYSPLVEALGLQNHHKDFWIQGSCE
EYEGAWAPGPVFFVTGGEGRCQDFETTPPPRRRKEREEEEEERAREDGVD
ALGLGILGEENRQFFNSLFRNSVENEVKGGRRKRHLSSSFLDYQSSYPQS
KGGVKAEEEKGMSIWIHHSETRQMNFTDSKMRQLMVEEYSVPPFILLAAE
AMQLAVQRGIEGEEKGKEGRREGGMYLVSPPSGSCRVCGIENVEGPGAKA
CVVDEECKEEGWGGRILGQEKEEEGEKEEEEEESEWFSNTFPSFSSSSSS
SSSSFVEYKEQFIILGDVHTTSSSSSNPPSPPPSFNTSALVEAAFRQALL
SILSSLDSRPQSLQLSVWSAEPDAFFAPSPPPSPLSSSMYKFIVIATDRD
NATAIVDALSFSSSSFSSPSLPSSFSSLPSFPEAVLAFIQEKEREEGVEG
GIGQVELAVEKTMHIPAYNSKGFLQQQQTWKEGWREGGKGGGRRTTAWAE
GGGREGGRTSFFFPCL*
back to top

mRNA from alignment at chr28:396142..400587-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO28G01270.1 ID=NO28G01270.1|Name=NO28G01270.1|organism=Nannochloropsis oceanica|type=mRNA|length=4446bp|location=Sequence derived from alignment at chr28:396142..400587- (Nannochloropsis oceanica)
AGACAGACGGCAAATATAGGGGGCTTGTGGTCAGACACACACACACACCA CCACAACCATGCCTCCGCCTGAAGCGGGCAACCCGGCATGGCAGTCGGCG CGTCTCCGCAGCATCAGCAGCATCCGTGATGATGAGCAAAACAAGGCACG CGACGCTCCGCCGTGTGAGATTCTGGATGTACAACCAGCACCAGCGCCAT CAAAACCATCACCGCCACCATTGACGCTATCAAGTAGCACCAGCTGGTCG TGGCAGAAAAAGCTAGCATTTGCGACACTAGTCTTGGTATGTGTCGGGCT GGTCGCTGCCTTCGTTCCGGTAAGTGTCTGTGCACCATCATGCTCACTAA TTCTATCAAAATCAAAATCCAGAACACTGCGCGCTAGACCCCAAGCTCAC ATCCCCCTCTGTCACGATGCACGCGCACGCAGAGATCAAATCAAAGCGCT TCCTCTCCGCTACTAAACCAACCACACGCGGTCCTAGACTACCAAGCTGG CCGGATCCCTGCTTTAACGGCCACGAGTCCACCGACTTCGGAAGCGCCAG CAATCGCAAGTGTCCCAATCGCGCTAAAAGCTTCGGCGACTACCACTTCG GGCTCGTCGACTCCTGCAACCAAGGCTAAAGATCTCATCACCTCTGCGCT TTTGACCGGGGGCCTCCAACAGCAACAGCAGGCAGGAGCTTTATCGCCGC CTGGGGGCGTATGCTTTGCAAGCGACATGCCCGAGTTATTGAAAGCCCTG GAAAGTGATTCGGGCTGCACCATCATCAATCTGATAATATTTGCGGACGA CAGCAACGAAGAGAACGATAATGACACGGCTTTTGTTTTTAAGAATGAAG TATTAGTTTCCAGGCGAGTCATAATTCAAGGCAACAGTGTGATGCTCCCG CTCTTGGATTGCAGCTCATCGAATCGGTGCTTCCGAGTCCTGGCCGGTGG GTATCTAGAGCTGCGATACTTGCGCATCAATCAATCAAGATTAGGAGAGT TGCGCCCTGCGAATCCTCTTTTTGAAGGAATAACGCCCACGGGGATGGTA AGAGAATACCGGGGGAGCAGTGCCTATTTTGAACCCGGGGCAGCAGGCGG TCGATTCTTGGGCGTTTATTTCGATGATGATCAGAGCGACGAGTTTGAGT GGATGCTGGAGGAGAACTTGGCGGTGACGAGTTTTCGCATATACGGCGGC TACATTTTTATGGCTGGTGGACGGTTGGAATTCGACTTCTGCTTTTTTTG GGATTTTGAGTTCATAACACCCTTGGATAGGATCTACGTGGGCGGGGACG TTTTGGTCTTGGCGGGCGAAGTGAGCTTCACGGGCTGTGTCTGGGTTTAT ACGACCTTTTTTGGTGTTGAGAATGGCGCGGGGTTCAACATCGCCCTTTT AGGCGGCGTAGCCACATACACGCTTTGTGAGGTACGTTTTACGTTGTTCG TTATCGGATTTTGGGCGTAATTGTTTACCCTCCGTCCATTCTAGCCCCTC ACTTGCACCTCCTTCTCTCCCATTTTCCCTCCCTTTCTTTCCCTCTTGCA GTTTGCGGAAGTCAATGGATTTCTAACCATGAACGGCGTCGGACAGGCCT TTCTTGTTGCTGGAGGGGTTCAAGTTCTCACGGGCTGCTCTTTTACTTAC TTCACCGTCTCTGCTTTCTTTTCCGGGACCGGGGAAACGACTGTGTTGGG GGGTGCTCAGATCGCAGTGGGAGTGAGTTTATTTGATACCTATACCATGC TTGCATCGTTCGGCGCGGGTTTAGATTACTGTGTCTGTGCAGGATTAATG GTTCATATTGGCGCGGCGATCAACGAGTACTCGGGGCCTATTGCGGCGAG TATGATGGGGGGCTATACCTACCTGGGAACAGGGACGTATGTGGGGATTG GCTCACCCGCTATAAGCACCGTGACGACGATTCAGGAGGCAGGCGTTGTG AGTACTGGATGGGAGAAAATGAGTAAGGGGGTTATGTCAACGCTTACTTC CGGGTGCTCTTACTGTGCAGGCAATTTCATTCTTCTGCCCTTTCTCGTTA TCTTTATTCCCTCTTTGTTTCCCTCCCTCCCCTCGCCCTCTTTCTTCTAG GGCGGCACCTATTGCAATGTTGCGGGAATCAGCACTTTTATTGGATGTAC CATCATGGAATTTACCGGCATCGCGGCTGGAAATGTCCTCGGAGAATTTG TGGCCGTTGGAAGTAAGTTAATGGAGAGGAATGAAGAGAGGGGGAGAGAG AGGGAGGGAATAAACAACAATCAAAAACAGGTCAGTCTGTCTTGTCCTGA GCAATCAAAGGTGCACTTCCGACTTAGGCTGGAGCTTCAAGCAAATTTTT CACGTTACACCCTCTCCGTCCTTCCCTTATACCCTGTCTCCCTCTCTCTC TTCTCCTAGCTGGTCTGCTCATCTGGATCGGAAGTCCCTTCATCGAGTAC AGCGGGATAGAGTTTTTCAAAGGCCTGGGAGGAACTATTTTCGTCGGCGC TGGCGCCGCTGTCCTAGGTTACTCTCCTCTAGTGGAGGCCCTAGGCTTAC AGAACCACCACAAAGACTTTTGGATTCAAGGGAGTTGCGAAGAATATGAG GGGGCGTGGGCACCGGGGCCGGTGTTTTTCGTGACGGGCGGTGAGGGAAG ATGCCAAGATTTCGAGACGACCCCTCCGCCGCGAAGGAGGAAAGAAAGGG AGGAGGAGGAGGAGGAAAGAGCGAGGGAAGATGGAGTGGATGCGCTGGGG TTGGGGATTTTGGGGGAGGAGAACAGACAATTTTTTAATTCCTTGTTTCG AAACAGTGTGGAAAATGAGGTGAAGGGTGGAAGGAGGAAGAGACATCTTT CTTCATCTTTCCTCGACTATCAGTCCTCGTACCCTCAGTCAAAAGGAGGA GTAAAGGCAGAGGAAGAGAAGGGCATGAGTATCTGGATCCACCACTCGGA AACGCGGCAGATGAACTTTACCGACTCCAAGATGAGACAGCTTATGGTAG AGGAATATAGCGTCCCTCCTTTCATCCTCCTTGCCGCCGAGGCAATGCAG CTGGCAGTGCAGCGAGGCATCGAGGGGGAAGAAAAAGGGAAGGAGGGAAG GAGGGAGGGGGGGATGTATCTAGTGAGTCCGCCGAGTGGAAGTTGTCGAG TGTGTGGGATCGAAAATGTGGAGGGGCCCGGTGCCAAGGCCTGTGTGGTG GATGAGGAATGCAAGGAGGAGGGATGGGGAGGGAGGATTTTAGGGCAGGA GAAGGAGGAGGAGGGAGAGAAGGAGGAGGAGGAGGAGGAGAGTGAGTGGT TTTCGAACACATTTCCCTCATTTTCGTCCTCGTCCTCGTCTTCGTCCTCG TCGTTTGTGGAGTACAAGGAGCAGTTTATCATACTTGGAGACGTGCACAC AACGAGTAGCAGCAGCAGCAACCCTCCCTCTCCCCCTCCCTCCTTTAACA CCTCTGCCTTAGTCGAAGCCGCATTCCGTCAGGCCCTTCTCTCAATCCTT TCCTCCCTCGATTCCCGCCCGCAGTCTCTTCAGCTCAGCGTTTGGTCTGC CGAGCCCGATGCTTTCTTCGCTCCATCCCCCCCTCCCTCTCCCCTCTCCT CGTCCATGTACAAATTTATCGTCATTGCCACCGACAGAGACAACGCCACA GCCATCGTAGATGCCCTCTCCTTCTCCTCGTCTTCCTTCTCCTCGCCCTC TCTCCCTTCTTCTTTCTCCTCCCTTCCCTCCTTCCCCGAGGCCGTACTCG CTTTTATACAGGAGAAAGAGAGGGAGGAAGGGGTGGAAGGAGGGATAGGA CAGGTGGAGTTGGCAGTAGAAAAGACGATGCACATCCCAGCCTATAATTC AAAAGGGTTTCTGCAGCAGCAGCAGACATGGAAAGAGGGATGGAGGGAGG GAGGGAAGGGAGGTGGCCGTAGAACCACTGCGTGGGCTGAGGGGGGGGGG AGGGAGGGAGGGAGGACGAGTTTTTTTTTCCCGTGTCTCTGAGAGATCCT TCCCTCCCTGCTTTGCCTGTGACGCACCTCACCTATGACCACCCTTATTC CCTGTGTTTGCGTGGATTTTCTCAATCAGAGTCAGTCAAATTGCAGTTGC TGTTGAGTAGTGGCGGGAGAGAGGAGGGGAAGGAGGGGGAGGTGCGAGTG TTGGGTAAGGTTCTGATGGATGCTGGGGGCCACTGCGGGGAGAAAAGGCA GACCGTAATCTTTGTTGAGGACAAGGAGGAGGAAGGGAGGAAGGAAGGAG GGAAGGGCGTGATTGTTGTGCAGGTGCCTGCAGGGGAAGTTTCTTTCGCG TTGCAGGCTGTGGATGCTTCGACGGGAGGGATGGGTTTCTCGCCTTTGAT GGTGGTTTCGAAGGAGGGGAGGAAGAGGCGGTTGTATGGGCCGTTGGTGG AGTTTTAGAGAGGGAATAATATCTGCTTTAAGTTGGGGGCCACCGA
back to top

Coding sequence (CDS) from alignment at chr28:396142..400587-

>NO28G01270.1 ID=NO28G01270.1|Name=NO28G01270.1|organism=Nannochloropsis oceanica|type=CDS|length=3351bp|location=Sequence derived from alignment at chr28:396142..400587- (Nannochloropsis oceanica)
ATGCCTCCGCCTGAAGCGGGCAACCCGGCATGGCAGTCGGCGCGTCTCCG
CAGCATCAGCAGCATCCGTGATGATGAGCAAAACAAGGCACGCGACGCTC
CGCCGTGTGAGATTCTGGATGTACAACCAGCACCAGCGCCATCAAAACCA
TCACCGCCACCATTGACGCTATCAAGTAGCACCAGCTGGTCGTGGCAGAA
AAAGCTAGCATTTGCGACACTAGTCTTGGTATGTGTCGGGCTGGTCGCTG
CCTTCGTTCCGAGATCAAATCAAAGCGCTTCCTCTCCGCTACTAAACCAA
CCACACGCGGTCCTAGACTACCAAGCTGGCCGGATCCCTGCTTTAACGGC
CACGAGTCCACCGACTTCGGAAGCGCCAGCAATCGCAAGTGTCCCAATCG
CGCTAAAAGCTTCGGCGACTACCACTTCGGGCTCGTCGACTCCTGCAACC
AAGGCTAAAGATCTCATCACCTCTGCGCTTTTGACCGGGGGCCTCCAACA
GCAACAGCAGGCAGGAGCTTTATCGCCGCCTGGGGGCGTATGCTTTGCAA
GCGACATGCCCGAGTTATTGAAAGCCCTGGAAAGTGATTCGGGCTGCACC
ATCATCAATCTGATAATATTTGCGGACGACAGCAACGAAGAGAACGATAA
TGACACGGCTTTTGTTTTTAAGAATGAAGTATTAGTTTCCAGGCGAGTCA
TAATTCAAGGCAACAGTGTGATGCTCCCGCTCTTGGATTGCAGCTCATCG
AATCGGTGCTTCCGAGTCCTGGCCGGTGGGTATCTAGAGCTGCGATACTT
GCGCATCAATCAATCAAGATTAGGAGAGTTGCGCCCTGCGAATCCTCTTT
TTGAAGGAATAACGCCCACGGGGATGGTAAGAGAATACCGGGGGAGCAGT
GCCTATTTTGAACCCGGGGCAGCAGGCGGTCGATTCTTGGGCGTTTATTT
CGATGATGATCAGAGCGACGAGTTTGAGTGGATGCTGGAGGAGAACTTGG
CGGTGACGAGTTTTCGCATATACGGCGGCTACATTTTTATGGCTGGTGGA
CGGTTGGAATTCGACTTCTGCTTTTTTTGGGATTTTGAGTTCATAACACC
CTTGGATAGGATCTACGTGGGCGGGGACGTTTTGGTCTTGGCGGGCGAAG
TGAGCTTCACGGGCTGTGTCTGGGTTTATACGACCTTTTTTGGTGTTGAG
AATGGCGCGGGGTTCAACATCGCCCTTTTAGGCGGCGTAGCCACATACAC
GCTTTGTGAGTTTGCGGAAGTCAATGGATTTCTAACCATGAACGGCGTCG
GACAGGCCTTTCTTGTTGCTGGAGGGGTTCAAGTTCTCACGGGCTGCTCT
TTTACTTACTTCACCGTCTCTGCTTTCTTTTCCGGGACCGGGGAAACGAC
TGTGTTGGGGGGTGCTCAGATCGCAGTGGGAGTGAGTTTATTTGATACCT
ATACCATGCTTGCATCGTTCGGCGCGGGTTTAGATTACTGTGTCTGTGCA
GGATTAATGGTTCATATTGGCGCGGCGATCAACGAGTACTCGGGGCCTAT
TGCGGCGAGTATGATGGGGGGCTATACCTACCTGGGAACAGGGACGTATG
TGGGGATTGGCTCACCCGCTATAAGCACCGTGACGACGATTCAGGAGGCA
GGCGTTGGCGGCACCTATTGCAATGTTGCGGGAATCAGCACTTTTATTGG
ATGTACCATCATGGAATTTACCGGCATCGCGGCTGGAAATGTCCTCGGAG
AATTTGTGGCCGTTGGAACTGGTCTGCTCATCTGGATCGGAAGTCCCTTC
ATCGAGTACAGCGGGATAGAGTTTTTCAAAGGCCTGGGAGGAACTATTTT
CGTCGGCGCTGGCGCCGCTGTCCTAGGTTACTCTCCTCTAGTGGAGGCCC
TAGGCTTACAGAACCACCACAAAGACTTTTGGATTCAAGGGAGTTGCGAA
GAATATGAGGGGGCGTGGGCACCGGGGCCGGTGTTTTTCGTGACGGGCGG
TGAGGGAAGATGCCAAGATTTCGAGACGACCCCTCCGCCGCGAAGGAGGA
AAGAAAGGGAGGAGGAGGAGGAGGAAAGAGCGAGGGAAGATGGAGTGGAT
GCGCTGGGGTTGGGGATTTTGGGGGAGGAGAACAGACAATTTTTTAATTC
CTTGTTTCGAAACAGTGTGGAAAATGAGGTGAAGGGTGGAAGGAGGAAGA
GACATCTTTCTTCATCTTTCCTCGACTATCAGTCCTCGTACCCTCAGTCA
AAAGGAGGAGTAAAGGCAGAGGAAGAGAAGGGCATGAGTATCTGGATCCA
CCACTCGGAAACGCGGCAGATGAACTTTACCGACTCCAAGATGAGACAGC
TTATGGTAGAGGAATATAGCGTCCCTCCTTTCATCCTCCTTGCCGCCGAG
GCAATGCAGCTGGCAGTGCAGCGAGGCATCGAGGGGGAAGAAAAAGGGAA
GGAGGGAAGGAGGGAGGGGGGGATGTATCTAGTGAGTCCGCCGAGTGGAA
GTTGTCGAGTGTGTGGGATCGAAAATGTGGAGGGGCCCGGTGCCAAGGCC
TGTGTGGTGGATGAGGAATGCAAGGAGGAGGGATGGGGAGGGAGGATTTT
AGGGCAGGAGAAGGAGGAGGAGGGAGAGAAGGAGGAGGAGGAGGAGGAGA
GTGAGTGGTTTTCGAACACATTTCCCTCATTTTCGTCCTCGTCCTCGTCT
TCGTCCTCGTCGTTTGTGGAGTACAAGGAGCAGTTTATCATACTTGGAGA
CGTGCACACAACGAGTAGCAGCAGCAGCAACCCTCCCTCTCCCCCTCCCT
CCTTTAACACCTCTGCCTTAGTCGAAGCCGCATTCCGTCAGGCCCTTCTC
TCAATCCTTTCCTCCCTCGATTCCCGCCCGCAGTCTCTTCAGCTCAGCGT
TTGGTCTGCCGAGCCCGATGCTTTCTTCGCTCCATCCCCCCCTCCCTCTC
CCCTCTCCTCGTCCATGTACAAATTTATCGTCATTGCCACCGACAGAGAC
AACGCCACAGCCATCGTAGATGCCCTCTCCTTCTCCTCGTCTTCCTTCTC
CTCGCCCTCTCTCCCTTCTTCTTTCTCCTCCCTTCCCTCCTTCCCCGAGG
CCGTACTCGCTTTTATACAGGAGAAAGAGAGGGAGGAAGGGGTGGAAGGA
GGGATAGGACAGGTGGAGTTGGCAGTAGAAAAGACGATGCACATCCCAGC
CTATAATTCAAAAGGGTTTCTGCAGCAGCAGCAGACATGGAAAGAGGGAT
GGAGGGAGGGAGGGAAGGGAGGTGGCCGTAGAACCACTGCGTGGGCTGAG
GGGGGGGGGAGGGAGGGAGGGAGGACGAGTTTTTTTTTCCCGTGTCTCTG
A
back to top
Synonyms
Publications