NO28G01250, NO28G01250 (gene) Nannochloropsis oceanica

Overview
NameNO28G01250
Unique NameNO28G01250
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length5482
Alignment locationchr28:385292..390773 -

Link to JBrowse

Properties
Property NameValue
DescriptionTetratricopeptide repeat family protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:385292..390773 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR025714Methyltranfer_dom
IPR029063SAM-dependent_MTases
IPR011990TPR-like_helical_dom
IPR013026TPR-contain_dom
IPR019734TPR_repeat
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
BLAST of NO28G01250 vs. NCBI_GenBank
Match: EWM20867.1 (tpr repeat-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 355.1 bits (910), Expect = 3.800e-94
Identity = 203/398 (51.01%), Postives = 235/398 (59.05%), Query Frame = 0
Query:   28 VLELLRRISWLHWAGIVGLVSVVLGGRHFFRKIDDAEALIQGADDAYQRGNRLFQKGNKERAKHHYMKAVTLFPKHVYAWSNLGTVLRELGELQGSVEAHKQA------------------------------------------------------------------------LALIPKARNHYNLAVSYQSQGENKAAISSYRTALSLDETGIPDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSNAGAWGNHCNILQSLEGKEGGMXXXXXXXXXXXXXXXXXXXXRVETCYRHLILAHPSYDRAYVNLGGYFYIKGDLEKAAALYMKALEINPENAIAIHALGALQGEKLEGASLDYLSELFDSYSATFDASLHALEYKSPELMRRAVDRYL 354
            +L  LR +SW+H AGIVGL SV+LG RHF R++D AEALIQ ADDAYQRGN LFQ+G KE+A+  Y +AV LFPKHVYAWSNLGTV RELG+LQGS+ AH++                                                                         L L+P  R HYN+AVS+QS  +N AAI+SYRTA+SL+  G+PDA                             SNAGA GNHCNILQS+EG+EGG                     RVE CY  LI AHP YDRAYVNLGGY+Y +G++EK+AA YMKALE NP+NAIA HALGAL GEKLEGASL YL+ELFDSYSATFDASLHALEYKSPEL+RRAVD  L
Sbjct:   36 MLSYLRGLSWMHLAGIVGLASVILGVRHFVRQVDVAEALIQNADDAYQRGNALFQRGQKEKARAAYERAVRLFPKHVYAWSNLGTVRRELGDLQGSLAAHQEVERXXXXXXXXXXXRGPGGLLFNGNTSKRISHSHDFILPGDLWSRDLVSPPLSLLRXXXXXXXXXXXXXXXXXLELLPSPRYHYNVAVSHQSLADNPAAIASYRTAISLNPDGLPDAYFNLGVALQEEGDLQEASRAYLRAYAIDPSNAGAMGNHCNILQSVEGREGG--GSEQAGEDVGEGGEEAGVGRVEGCYLRLIRAHPEYDRAYVNLGGYYYTQGEMEKSAAWYMKALEHNPKNAIAAHALGALGGEKLEGASLAYLAELFDSYSATFDASLHALEYKSPELLRRAVDGLL 431          
BLAST of NO28G01250 vs. NCBI_GenBank
Match: WP_056007457.1 (tetratricopeptide repeat protein [Frateuria sp. Soil773] >KRE88300.1 methyltransferase [Frateuria sp. Soil773])

HSP 1 Score: 170.6 bits (431), Expect = 1.300e-38
Identity = 111/292 (38.01%), Postives = 154/292 (52.74%), Query Frame = 0
Query:  251 CYRHLILAHPSYDRAYVNLGGYFYIKGDLEKAAALYMKALEINPENAIAIHALGALQGEKLEGASLD-YLSELFDSYSATFDAS-LHALEYKSPELMRRAVDRYLGSPEGKELAPKGPVWNVLDAGCGTGLSGVLFRNLSSHLMGVDVSMRMAQKAEARGVYDELSVGDMAEELLARAGSLDLIISADVMVYMGRLDYILGTTSKALKDETGLFVFTLESLEEVPKTEIAEDRETESDEGWLLRPTGRYAHRREYVEELLGKVGMEVVSVEAVVGRKDKGQPIPGWLFLCRK 541
            C+R      P   RA   LG   Y  G   +AA +Y   L   P+N +  H L A  G +    + D Y+ E+FD ++ +FD   LH L Y++P+++  A+ R L +P G          +VLDAGCGTGL   L R  + HL GVD+S  M  KA  RG YDEL+V ++   L A  GS DL++SAD +VY G L  +LG   +AL+   G   FTLE+LE        ED  +E      L  +GRY H R YVE +LG+ G   V + A   R++ G+ + GW+ L R+
Sbjct:  155 CFREAHRLDPGNVRALEGLGVSLYTLGRHAEAARVYRDWLASEPDNPVPRHMLAACGGAEAPPRADDAYVREVFDGFADSFDEQLLHNLGYRAPQVLVDALARRLPAPSG--------ALDVLDAGCGTGLCAPLIRPHARHLAGVDLSGGMVDKAHLRGGYDELAVAELTAWLQAHPGSYDLVLSADTLVYFGELGPVLGAAHEALR-PGGQVAFTLEALE-------TEDDRSE------LSSSGRYRHTRRYVERVLGEAGFGGVEIAADTLRREAGREVVGWVVLARR 424          
BLAST of NO28G01250 vs. NCBI_GenBank
Match: CEM39171.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 167.5 bits (423), Expect = 1.100e-37
Identity = 153/507 (30.18%), Postives = 230/507 (45.36%), Query Frame = 0
Query:   46 LVSVVLGGRHFFRKIDDAEALIQ-GADDAYQRGNRLFQKGNKERAKHHYMKAVTLFPKHVYAWSNLGTVLRELGELQGSVEAHKQALALIPKARNHYNLAVSYQSQGENKAAISSYRTALSLDET----GIPDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSNAGAWGNHCNILQSLEGKEGGMXXXXXXXXXXXXXXXXXXXXRVETCYRHLILAHPSYDRAYVNLGGYFYIKGD-LEKAAALYMKALEINPENAIAIHALGALQGEK-LEGASLDYLSELFDSYSATFDASLHALEYKSPELMRRAVDRYLGSPEGKELAPKGPVWNVLDAGCGTGLSGVLFRNLSSHLMGVDVSMRMAQKAEARGVYDELSVGDMAEELLARA-----GSLDLIISADVMVYMGRLDYILGTTSKAL-KDETGLFVFTLESLEEVPKTEIAEDRETESDEGWLLRPTGRYAHRREYVEELLGKVGMEVVSVEAVVGRKDKGQPIPGWLFLCR 540
            +VS++ G      +I DA AL +         G+ +  KG+ + A+  +  AV   P H  A  NLGTVL +      +++ ++QA+A   +A      ++S+ S        S+Y T  SL E      I                                +N      H  + + L   + G                          Y +   A     R Y     Y    G  +E AA  + +AL  +  N+IA ++L ++Q +  L  AS DY+  LFD Y+ TFD SL  L Y++P ++R AVDR   S     L    P+ NVLD GCGTGLSG +FRN+++ L G D+S  M + AE +GVY+   VGD+     A A     G +DLI +ADV+VY+G L      +S+ + KD  G   F++E L     +E+  D   E D+G+ ++ TGR+AH REYV    G+ G   +  E +  R + G+P+ G LF+ R
Sbjct:   55 IVSLLEGVDESNGEIKDASALAELRVSVLCNMGSLMVDKGDLDEARRLFEAAVAFQPDHADALFNLGTVLHDTHHYWEAIDRYEQAIA--AEAAMSEMPSLSWTSVASAANMGSAYETLESLPEAVETYQIAMEILDGLMGDLTDQTEIDARSARRGDGAAFLTNEEISQMHTRLAEGLLRIQAG-------------------------TYTYWEEAGKEGTRKY----KYECSPGSCVELAAEHFRRALRFDKSNSIADYSLRSMQKDSTLTEASPDYVKSLFDHYADTFDKSLQKLHYQAPLMIRMAVDRLQES-----LLVAYPLRNVLDVGCGTGLSGQVFRNVTTFLYGFDLSPEMIRLAEEKGVYNATHVGDLQSGFGALAGHGLHGKVDLITAADVLVYVGDLREFFQRSSEVIRKDGRGFLAFSVEEL----TSELTSD---EEDKGYQVQTTGRFAHTREYVVREGGRWGFSAMYGERIYPRFEYGEPVKGLLFVLR 518          
BLAST of NO28G01250 vs. NCBI_GenBank
Match: WP_004367907.1 (tetratricopeptide repeat protein [Thauera phenylacetica] >ENO96163.1 hypothetical protein C667_15389 [Thauera phenylacetica B4P])

HSP 1 Score: 165.6 bits (418), Expect = 4.300e-37
Identity = 98/268 (36.57%), Postives = 150/268 (55.97%), Query Frame = 0
Query:  269 LGGYFYIKGDLEKAAALYMKALEINPENAIAIHALGALQGEKLEG-ASLDYLSELFDSYSATFDASLHALEYKSPELMRRAVDRYLGSPEGKELAPKGPVWNVLDAGCGTGLSGVLFRNLSSHLMGVDVSMRMAQKAEARGVYDELSVGDMAEELLARAGSLDLIISADVMVYMGRLDYILGTTSKALKDETGLFVFTLESLEEVPKTEIAEDRETESDEGWLLRPTGRYAHRREYVEELLGKVGMEVVSVEAVVGRKDKGQPIPGWL 536
            LG  +Y  G+ +KAA +Y   L   P+N IA H L A  GE +   A+ DY+   FD+++++FD  L  L Y++P  + +A++   G+P  +         ++LDAGCGTGL G L R  +  L GVD+S +M Q+AE R VYD+L+  ++   L AR  + D+++SAD + Y G L  +L     AL+    LF FT+E++           R+ ++   ++L+P GRYAH R++V E L   G E     A V R + G+P+ GWL
Sbjct:  189 LGLAYYTLGEFDKAAEVYRSWLADEPDNPIARHHLAACTGEAVPARAADDYVERTFDAFASSFDEKLQRLHYRAPMQVAQALEDACGAPAAR--------LDILDAGCGTGLCGPLVRAHARRLEGVDLSAQMLQRAECRRVYDQLNKAELGAFLAARPAAWDVVLSADTLCYFGELGPVLAAAHGALRRGGRLF-FTVEAV-----------RDEDAGPPFVLQPNGRYAHTRDHVVEALVAAGFEAALPSAQVLRTEGGEPVAGWL 436          
BLAST of NO28G01250 vs. NCBI_GenBank
Match: WP_047787599.1 (methyltransferase domain-containing protein [Variovorax paradoxus] >KLN52284.1 trans-aconitate 2-methyltransferase [Variovorax paradoxus])

HSP 1 Score: 165.6 bits (418), Expect = 4.300e-37
Identity = 98/263 (37.26%), Postives = 141/263 (53.61%), Query Frame = 0
Query:  277 GDLEKAAALYMKALEINPENAIAIHALGALQGEKLEGASLDYLSELFDSYSATFDASLHALEYKSPELMRRAVDRYLGSPEGKELAPKGPVWNVLDAGCGTGLSGVLFRNLSSHLMGVDVSMRMAQKAEARGVYDELSVGDMAEELLARAGSLDLIISADVMVYMGRLDYILGTTSKALKDETGLFVFTLESLEEVPKTEIAEDRETESDEGWLLRPTGRYAHRREYVEELLGKVGMEVVSVEAVVGRKDKGQPIPGWLFLCR 540
            G+ E+A  +Y + L  +P N +  H L A +G     AS  Y+  +FDSY+ +FDASL  L Y++PEL+  AV    G+P    LA       V+DAGCGTGL   L R  ++HL G D+S+ M Q+AE RG YD L   ++   L  + G  DL+ISAD + Y G L  +L   ++AL+ E G+ VFT+E++                 + + L  +GRY H   +VE  L   G   V +E +V R++ GQ + GWL   R
Sbjct:  200 GESERAVGMYREWLAEDPGNPVVTHLLAACEGHAPARASDGYVETVFDSYAGSFDASLEKLHYRAPELVAHAVQEMHGAP-AASLA-------VVDAGCGTGLCAPLLRPWAAHLAGCDLSVGMLQRAEQRGGYDVLHKAELTHYLHTQPGRFDLVISADTLCYFGDLREVLAAAARALRPEGGV-VFTVEAM-------------PGGQDDFRLEGSGRYRHAAAHVEARLAAAGFGAVRIEPIVPRREAGQDVQGWLASAR 440          
BLAST of NO28G01250 vs. NCBI_GenBank
Match: WP_021005297.1 (methyltransferase domain-containing protein [Variovorax paradoxus] >AGU47736.1 putative methyltransferase [Variovorax paradoxus B4])

HSP 1 Score: 164.9 bits (416), Expect = 7.300e-37
Identity = 97/263 (36.88%), Postives = 142/263 (53.99%), Query Frame = 0
Query:  277 GDLEKAAALYMKALEINPENAIAIHALGALQGEKLEGASLDYLSELFDSYSATFDASLHALEYKSPELMRRAVDRYLGSPEGKELAPKGPVWNVLDAGCGTGLSGVLFRNLSSHLMGVDVSMRMAQKAEARGVYDELSVGDMAEELLARAGSLDLIISADVMVYMGRLDYILGTTSKALKDETGLFVFTLESLEEVPKTEIAEDRETESDEGWLLRPTGRYAHRREYVEELLGKVGMEVVSVEAVVGRKDKGQPIPGWLFLCR 540
            G+ E+A  +Y + L  +P N +  H L A +G     AS  Y+  +FDSY+ +FDASL  L Y++PEL+  AV    G+P  + LA       V+DAGCGTGL   L R  ++HL G D+S+ M Q+A+ RG YD L   ++   L  + G  DL+ISAD + Y G L  +L   ++AL+ E G+ VFT+E++                 + + L  +GRY H   +VE  L   G   V +E +V R++ GQ + GWL   R
Sbjct:  200 GESEQAVGMYREWLAEDPGNPVVTHLLAACEGHAPARASDGYVETVFDSYAGSFDASLEKLHYRAPELVAHAVQEMHGAP-AESLA-------VVDAGCGTGLCAPLLRPWAAHLAGCDLSVGMLQRAQQRGGYDVLHKAELTHYLHTQPGRFDLVISADTLCYFGDLREVLAAAARALRPEGGV-VFTVEAM-------------PGGQDDFRLEGSGRYRHAAAHVEARLAAAGFGAVRIEPIVPRREAGQDVQGWLASAR 440          
BLAST of NO28G01250 vs. NCBI_GenBank
Match: WP_062363587.1 (methyltransferase domain-containing protein [Variovorax paradoxus])

HSP 1 Score: 163.7 bits (413), Expect = 1.600e-36
Identity = 97/263 (36.88%), Postives = 142/263 (53.99%), Query Frame = 0
Query:  277 GDLEKAAALYMKALEINPENAIAIHALGALQGEKLEGASLDYLSELFDSYSATFDASLHALEYKSPELMRRAVDRYLGSPEGKELAPKGPVWNVLDAGCGTGLSGVLFRNLSSHLMGVDVSMRMAQKAEARGVYDELSVGDMAEELLARAGSLDLIISADVMVYMGRLDYILGTTSKALKDETGLFVFTLESLEEVPKTEIAEDRETESDEGWLLRPTGRYAHRREYVEELLGKVGMEVVSVEAVVGRKDKGQPIPGWLFLCR 540
            G+ ++A  +Y + L  +P N +  H L A +G+    AS  Y+  +FDSY+ +FDASL  L Y++PEL+ +AV +  G+P    LA       V+DAGCGTGL   L R  ++HL G D+S+ M Q+AE RG YD L   ++   L  + G  DL+ISAD + Y G L  +L    +AL+ E G+ VFT+E++                   + L  +GRY H   +VE  L   G   V +E +V R++ GQ + GWL   R
Sbjct:  200 GEHDQALGMYREWLAEDPGNPVVTHLLAACEGQAPARASDGYVETVFDSYAGSFDASLEKLHYRAPELVAQAVQQMHGAP-AASLA-------VVDAGCGTGLCAPLLRPWAAHLAGCDLSVGMLQRAEQRGGYDVLHKAELTHYLHTQPGRFDLVISADTLCYFGDLHEVLAAAERALRPEGGV-VFTVEAM-------------PGGQHDFRLEGSGRYRHAAAHVEACLAAAGFCAVRIEPIVPRREAGQDVQGWLASAR 440          
BLAST of NO28G01250 vs. NCBI_GenBank
Match: WP_074632020.1 (MULTISPECIES: tetratricopeptide repeat protein [Nitrosospira] >SDQ67985.1 Predicted methyltransferase, contains TPR repeat [Nitrosospira multiformis] >PTN05353.1 putative TPR repeat methyltransferase [Nitrosospira sp. Nsp6] >PTR08966.1 putative TPR repeat methyltransferase [Nitrosospira sp. Nsp5])

HSP 1 Score: 163.3 bits (412), Expect = 2.100e-36
Identity = 92/248 (37.10%), Postives = 139/248 (56.05%), Query Frame = 0
Query:  294 PENAIAIHALGALQGEKL-EGASLDYLSELFDSYSATFDASLHALEYKSPELMRRAVDRYLGSPEGKELAPKGPVWNVLDAGCGTGLSGVLFRNLSSHLMGVDVSMRMAQKAEARGVYDELSVGDMAEELLARAGSLDLIISADVMVYMGRLDYILGTTSKALKDETGLFVFTLESLEEVPKTEIAEDRETESDEGWLLRPTGRYAHRREYVEELLGKVGMEVVSVEAVVGRKDKGQPIPGWLFLCRK 541
            PE+ +A H L A  G+ +   AS +Y+   FD ++ +FDA L  L Y++P+L+  A+ R  G PE + +A        LDAGCGTGL G L       L+GVD+S  M  KA  R  YDEL   ++   LL ++G+ +LI+SAD +VY G L+ +LG   +AL+ E GL +FT+E+        I +   T    G+ + P GRY+H  EY+ ++L   G  + ++E+ V R + G  + GW+   RK
Sbjct:  222 PESPVAKHMLSACSGKNVPPRASDEYVESTFDRFADSFDAKLEKLAYRAPDLIAEALARACGEPEKRLMA--------LDAGCGTGLCGPLIAQYVHRLVGVDLSSGMLAKARGRNAYDELIKSELTTYLLTQSGAFNLIVSADTLVYFGSLEEVLGAAHQALQ-EGGLLIFTVEA---ATHEAINKATNTAVSTGYRINPHGRYSHSNEYLRQVLPAAGFSMFAIESAVLRMEGGSAVAGWVVTSRK 457          
BLAST of NO28G01250 vs. NCBI_GenBank
Match: WP_013539033.1 (methyltransferase domain-containing protein [Variovorax paradoxus] >ADU34787.1 Methyltransferase type 11 [Variovorax paradoxus EPS])

HSP 1 Score: 162.9 bits (411), Expect = 2.800e-36
Identity = 94/260 (36.15%), Postives = 138/260 (53.08%), Query Frame = 0
Query:  280 EKAAALYMKALEINPENAIAIHALGALQGEKLEGASLDYLSELFDSYSATFDASLHALEYKSPELMRRAVDRYLGSPEGKELAPKGPVWNVLDAGCGTGLSGVLFRNLSSHLMGVDVSMRMAQKAEARGVYDELSVGDMAEELLARAGSLDLIISADVMVYMGRLDYILGTTSKALKDETGLFVFTLESLEEVPKTEIAEDRETESDEGWLLRPTGRYAHRREYVEELLGKVGMEVVSVEAVVGRKDKGQPIPGWLFLCR 540
            E+A  +Y + L  +P N +  H L A +G     AS  Y+  LFDSY+ +FDASL  L Y++PEL+ RAV    G P  +          V+DAGCGTGL   L R  +SH+ G D+S+ M Q+AE RG YD L   ++   L  + G  DL+ SAD + Y G L  +L   ++AL+ E G+  FT+E+++  P               + L  +GRY H   +VE  L   G + + +E +V R++ G+ + GWL   R
Sbjct:  203 EQAIRMYREWLAEDPGNPVVAHLLAACEGHAPARASDGYVETLFDSYAGSFDASLEKLHYRAPELVARAVRDMFGPPAARIA--------VVDAGCGTGLCAPLLRPWASHMAGCDLSVGMLQRAEQRGGYDVLHKAELTHYLHTQPGRFDLVASADTLCYFGDLHEVLAAAARALRPEGGV-AFTVEAMDGGP-------------NDFRLEGSGRYRHAAAHVEACLAAAGFDAIRIEPIVPRREAGRNVQGWLASAR 440          
BLAST of NO28G01250 vs. NCBI_GenBank
Match: WP_018904070.1 (methyltransferase domain-containing protein [Variovorax paradoxus])

HSP 1 Score: 162.9 bits (411), Expect = 2.800e-36
Identity = 96/263 (36.50%), Postives = 143/263 (54.37%), Query Frame = 0
Query:  277 GDLEKAAALYMKALEINPENAIAIHALGALQGEKLEGASLDYLSELFDSYSATFDASLHALEYKSPELMRRAVDRYLGSPEGKELAPKGPVWNVLDAGCGTGLSGVLFRNLSSHLMGVDVSMRMAQKAEARGVYDELSVGDMAEELLARAGSLDLIISADVMVYMGRLDYILGTTSKALKDETGLFVFTLESLEEVPKTEIAEDRETESDEGWLLRPTGRYAHRREYVEELLGKVGMEVVSVEAVVGRKDKGQPIPGWLFLCR 540
            G+ ++A  +Y + L  +P N +  H L A +G+    AS  Y+  +FDSY+ +FDASL  L Y++PEL+ +AV +  G+P    LA       V+DAGCGTGL   L R  ++HL G D+S+ M Q+AE RG YD L   ++   L  + G  DL+ISAD + Y G L  +L   ++AL+   G+ VFT+E++                 + + L  +GRY H   +VE  L   G   V +E +V R++ GQ + GWL   R
Sbjct:  200 GEHDQALGMYREWLAEDPGNPVVTHLLAACEGQAPARASDGYVETVFDSYAGSFDASLEKLHYRAPELVAQAVQQMHGAP-AASLA-------VVDAGCGTGLCAPLLRPWAAHLAGCDLSVGMLQRAEQRGGYDVLHKAELTHYLHTQPGRFDLVISADTLCYFGDLHEVLAAAARALRPAGGV-VFTVEAM-------------PGGRDSFRLEGSGRYRHAAAHVEACLAAAGFGAVRIEPIVPRREAGQDVQGWLASAR 440          
The following BLAST results are available for this feature:
BLAST of NO28G01250 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM20867.13.800e-9451.01tpr repeat-containing protein [Nannochloropsis gad... [more]
WP_056007457.11.300e-3838.01tetratricopeptide repeat protein [Frateuria sp. So... [more]
CEM39171.11.100e-3730.18unnamed protein product [Vitrella brassicaformis C... [more]
WP_004367907.14.300e-3736.57tetratricopeptide repeat protein [Thauera phenylac... [more]
WP_047787599.14.300e-3737.26methyltransferase domain-containing protein [Vario... [more]
WP_021005297.17.300e-3736.88methyltransferase domain-containing protein [Vario... [more]
WP_062363587.11.600e-3636.88methyltransferase domain-containing protein [Vario... [more]
WP_074632020.12.100e-3637.10MULTISPECIES: tetratricopeptide repeat protein [Ni... [more]
WP_013539033.12.800e-3636.15methyltransferase domain-containing protein [Vario... [more]
WP_018904070.12.800e-3636.50methyltransferase domain-containing protein [Vario... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL059nonsL059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR065ncniR065Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR094ngnoR094Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004935NSK004935Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO28G01250.4NO28G01250.4-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO28G01250.3NO28G01250.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO28G01250.2NO28G01250.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO28G01250.1NO28G01250.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100894g2gene9549Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO28G01250.4NO28G01250.4Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO28G01250.3NO28G01250.3Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO28G01250.2NO28G01250.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO28G01250.1NO28G01250.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO28G01250 ID=NO28G01250|Name=NO28G01250|organism=Nannochloropsis oceanica|type=gene|length=5482bp
AGCCACAGGGTGTTCCTCTGCTTTTCCTCCCTCCTTTCCACCCTCCTTCA
AGTTCCTCCACCACCGTCTGTCGCTTCCCCGGCCAGACAAGGCAGCCCCA
TGGCACGTCTACCACCACCAGTATCTTCTGGAGCAGCAGCTGCAGCAGCG
AGTAAAAAGCGGAGGCGCGAAAAGGCGGGTGTCTTGGAGTTGCTACGCCG
TATCAGCTGGCTGCACTGGGCAGGAATCGTGGGCTTGGTCTCGGTCGTAC
TGGGTGGGCGTCATTTCTTCAGgtaaaaagctacttttgagggagggata
gaaggagacagggcaaggagatgctagaaggttagggttgcttacgtcct
tccgcgacaagatgttcactgagcgaccccgctctctccttcctcttact
cccccttctcattcctcatactctgtcgtcaacagGAAAATAGACGATGC
AGAAGCCCTCATTCAAGGTGCCGACGATGCCTACCAACGTGGGAACCGCC
TCTTCCAAAAAGGCAATAAAGAGCGAGCAAAACATCATTACATGAAAGCA
GTGACGCTCTTTCCGAAGCATGTCTACGCCTGGAGCAACCTGGGAACGGT
GCTGAGGGAATTAGGAGAATTACAAGGGTCTGTAGAAGCACACAAGCAGg
taaggggaattaaaaagaaatcaaggggtagtctagtatctccattggca
gggttttgtctgtctgtataaggcacctaacacaaacaccaatccacggc
ctccctccccttcctctgcttcctcgtttagGCCCTTGCCCTCATTCCCA
AGGCCCGGAACCACTACAATCTCGCTGTATCCTACCAAAGCCAGGGTGAG
AACAAAGCTGCCATATCTTCTTACCGCACGGCGTTGTCACTGGACGAAAC
GGGCATTCCTGACGCGTATTTCAATTTAGGCGTAGCGCTGCAAGAAGAAG
GACACTTAGAGgtcagcttgatttttccattgtatttttactgttttctc
atgttctcatgtcgatatgacggagctcattatagtgagcagcatgggct
tttttgcacctcacctcattctgatctatctacccccctccctccctccc
tccctccctcctttcctctctccgtcagGACGCAAATGCGGCCTATCTTC
GCGCTTATTCCCTTGATCCTTCGAATGCGGGCGCGTGGGGAAACCATTGC
AATATCCTTCAGAGTCTGGAAGGGAAAGAGGGGGGGATGGAGGACGAAGA
AGAGAAGACAGACGAGGAGGCGGGGAAGGAGGAAGGGAAGGACGTAGGGC
GCGTCGAGACTTGTTACCGGCACCTCATTCTCGCCCATCCTTCCTATGAT
CGCGCGTATGTAAACCTAGGAGGGTACTTTTACATCAAAGGTGACTTGGA
GAAGGCCGCAGCACTGTATATGAAAGCCCTGGAAATCAATCCGGAGAATG
CAATAGCGATACACGCGCTCGGCGCCCTACAGGGAGAGAAGCTGGAGGGG
GCGAGTTTGGATTATCTTTCCGAGTTATTTGATTCCTACTCGGCGACTTT
TGACGCCAGCTTGCACGCGCTCGAGTACAAGAGTCCTGAGCTCATGAGAA
GAGCAGTGGATAGGTACCTGGGCTCGCCGGAGGGGAAAGAGTTGGCCCCT
AAGGTAAAAGAAAATCCCATGCGTCTTGCGTTGGATTTTGATCCTCGACT
GCACTCGGACTCATGCCTCTTTCCATCCCTACCTCTTTTCCCTTTCCTCG
CTTCTTGAAAATACAGGGTCCTGTCTGGAACGTGCTCGACGCCGGCTGTG
GCACTGGTTTGTCTGGTGTTCTCTTCCGCAATCTTTCTTCGCACCTCATG
GGCGTGGACGTGTCTATGAGGATGGCGCAAAAAGCAGAGGCAAGAGGAGT
CTATGACGAGTTGAGCGTGGGCGACATGGCTGAGGAGCTGCTGGCGCGCG
CGGGGTCGCTGGATCTGGTAACTCATTGGGACCCCACACTCCCTCTTTTT
CTCTGTATGTCCCACTAACTCCCTCCTCTGCCAAGCTCGACGAGTTCATC
AAAATGGCAGCCAGATGTCCCGATCGTATCAATTGGGCTTTCCTGCCTTA
TCTCCCTCCCTCCCTCCCTCCCCCCTCCAGATCATTTCTGCCGATGTCAT
GGTGTACATGGGCCGACTTGATTATATTCTGGGCACCACCAGCAAAGCGC
TCAAAGACGAAACCGGCCTCTTTGTATTTACTCTTGAATCCCTAGAGGAA
GTCCCAAAAACAGAAATTGCGGAAGACAGGGAGACAGAAAGCGATGAAGG
GTGGTTGTTGCGCCCGACGGGGCGGTATGCCCACCGGAGGGAATATGTAG
AGGAGTTGTTGGGAAAGGTAGGGATGGAGGTGGTGAGCGTAGAAGCAGTG
GTAGGAAGAAAAGACAAAGGACAGCCAATACCTGGCTGGTTGTTTTTGTG
CCGCAAACGACGGGAACACATAAAAATATAGAACACCACAAGAAAGTTGC
AGTCAGCCACTAGTGGAGCCAAGACTAGGAAAGATAGGAGAACAGACAAC
TTACAAAGCATCAAGCCCCAGTTAGACACTGACTTTGATTCTTTCTTTCT
AATTATTTTATGACGGGGTCCTACTGCGTCGGCTTTATCGCCGTCGAAAC
GGGAGAGAGGCCCCTGTGTCTCTTAATTATCTTGAACGTTTCTCCCCATC
ATCCTACCTAAATCTTCGTTCCTCCATCGCCCAACTTTGTAATTTTCCAC
CTCGCCCTTCCCCTTTTGTCATTAACACTTAAAAACATCATACACGTATA
ACCTCATTACCTCCCTTCATATTTTTCCTTTCATGAGAATCTAGCATCTC
TCCTTTCTACTCTTAGGTCGCCGTTCCCTCCCTCATCCTCGTCCTCGTCC
TCATCAGTGATACTAAACTGACTACCGATCGAGAACTCAATCCCTTCCTC
ATCCCCCCCTCCTCCTTCCCTTCCTTCCTCAGACGTCGGTAGCTGCTTCG
CTTGTGCCAAAAATTGACTAGTGGGTGATGGGCGCCATAAGAAACAAACC
GCAGCTAGGACCGCGAAATTCAGGACTTCCCAGGCAACAGTCTCGGCCCA
GAGCAGCGTCCACGGCCATACAAAAAAGCCAATGCGCGACAAGAGCACCA
CAAGCGTAAGACATCCAAAGAGGGTGACAAACAAGAGGATTGTCGAAGAC
AGGCGGGTGTACAACTCGAGCTTGTACGTCTCGTTCTGCTCCCGCAGAAT
CTTCATCATCGTCACCAGGCTCATGTAGATCCAGGAAAGGAATACAATGT
CACACAGCAACGCTGGAAACGACCATAACATCCTGTTACTCCCATCCCCA
CCTTTCTCCGTCCGTCCCCCGCTACCTCCAATCTGTTGGGCCTCGCCGAT
CTCGCTCGCTTCGTCCAGTATGGTCGCACCCAAATACAACAATGTCAAAG
TCCCAAGACTGAACCATTCCCCCTTCTGCAAACTCGGCCGCGCAATGCCG
TACCCCAAACAAATCAGTAACAAAAGAGCGCGTGACGCTGTTTTCTGAAT
TAACTCGAAGACCATCGCGCTTATCACGACCGCCGGAAATGGACAACAGT
ACGGCGTTCCTTGCGAGTTCATGTGCGAAAATGCCAGAAACCATGACAAT
GCTTCCGCCGTCGCCACAACCAACACCCCGAGAATCGCGTAATGCAATCG
CAACAAATGCTTGCGATGCTTAACAACCATCCCAAGGTAAAGCATAAAAA
AGGCCAAAAACGCAAAAAAGCGCGCACCCTCAAAAGGCAGATAACCGTAG
AACCTTCCAGGTAAGTACCCATAAGGATTCTTGAAACTGATCTCCCCAGC
CAATGCCACCGAGGACAAGGACATTAGGGAGGGACACACTTGGAACAACA
CATTTTGGACCCCACTCTGCAAGACCTTATAGTCAGCATGCACCAGCGCC
TCCCATTCCTGACCCTCCCCACTCACTTCATCGACTTTGTGTGCGGCAAA
CGTGTGGAGCGAACGGTCGGAGGCTTCCGGAGGAAACTCAAGAGAACACA
AATCAGCATCAGGAACGAAGATGGCTCCCCCTGCCTCGTTCTCGGCAGTC
TCCCCTTCCTCGCTGCTGGCGCTGCCACCTATGCTTTTGCTTCTGTCTTC
TTCGTGGTAAAAGAGGACAGACACATTGACGTACTCTTCGTCGGCGTAAG
TGGAGATCCGGAGGGAGAGATTCAGATGCACGGAGGCGTCCTGATGCGAG
GGATGGGAGGGATGGATCGATGAAGGGCGGGGATGTAAGAGATCGCGTTG
AGAGTCGGATGCCATATCGGTGCCATCATAATGGTCTTAAAAGCGATAGT
GAATAAGAGGGAAGGGATGGAAAAAGAAGAAGCATGAAATAGGGATGGAG
GGAGGGATGAAGGGACCGAAGGTTGTACTTATTTACCCCATCTTTCCAGG
CGAGGGGCCCCTTGCCAGACCCGTACATGTACGTCTCGGTGAAAGACCAC
TTGGCCGTTTCGGCATATTTATCATTGATTTGATACTTGAAGGCGTAGCT
GACAAGGGGGAGGAAGGCAATAGTGAGGAGCAGGAGGAGGGGACAGAGAA
TGGAGGGGAGAGGCTGCATGACGATGATGATGCCGGTGGGAATGGAAAAA
AGAGAGGGCAGGACGGGAGAGTAGAGCAGCAAGTTTCCCCCGCTACTTCT
TGGACTGCTGTTGCTATCACGAGGAGGTCCAGCTTAAAGTGCCTGAGTAT
TTTTGCGTGTGGTAAGTGTAGATGCGGTGAAAGTTCGAGTGGGGAGACGT
AAGGCCTTGGATGGAGGCGAATAGCGACAGAGCGCGAATAAACGGCTCGG
CCGCACGGCACGTCGAGGATAATAACAGAAGGCCAGTGAGTTATATGTGG
CTCCAGTGGGCGTGGCCATTATACATGGCTAGGCACTAACAAACAAGGAG
GGGGGGGACCACGGGAGAAGAAAACAGTTAATGCGAGTGATGATGATCAG
CGATGTAACAGCGAGCACATACAACGGCAGGCAAAGCATCAATAACGAGA
CTGCTCCTCACCCTCATGGATCCCCGGTTGAACAGGAGCCGACTCTGTAA
ATCATGTGGGGCATCCATCGCATCGATTCCCCGATGTTGGCCAGGCGCTC
GATCCCCTCCTCGATCAGACCACCCATCGGGAGACAGAGTGTCCTAATCG
ATTTTTTTTTCTTTTCTCCCATTTCCACACTCTCGTCTTCCGGTGGTCAT
TTCGTTCTTCCACACGAAAACACCCAGCACCGTCTCCAGTAATGCGTGTT
GCTTCCTTGCTCGCCCCCTCCTGCCGGCTTCCCCCGCCCCCTTCTCCCAA
TTGCAGTCCCCTCATACCACACGTTCAGCAGCTGTTGCCCCTGATTGCTT
GCTTGCTTCGTTAATGGGACACTTTCAGCTCCTCCCTACTCCAAGCTATT
TGTAACCTCCCCGCTGACCTCTTCTTCCCCCC
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protein sequence of NO28G01250.4

>NO28G01250.4-protein ID=NO28G01250.4-protein|Name=NO28G01250.4|organism=Nannochloropsis oceanica|type=polypeptide|length=399bp
MARLPPPVSSGAAAAAASKKRRREKAGVLELLRRISWLHWAGIVGLVSVV
LGGRHFFRKIDDAEALIQGADDAYQRGNRLFQKGNKERAKHHYMKAVTLF
PKHVYAWSNLGTVLRELGELQGSVEAHKQALALIPKARNHYNLAVSYQSQ
GENKAAISSYRTALSLDETGIPDAYFNLGVALQEEGHLEDANAAYLRAYS
LDPSNAGAWGNHCNILQSLEGKEGGMEDEEEKTDEEAGKEEGKDVGRVET
CYRHLILAHPSYDRAYVNLGGYFYIKGDLEKAAALYMKALEINPENAIAI
HALGALQGEKLEGASLDYLSELFDSYSATFDASLHALEYKSPELMRRAVD
RYLGSPEGKELAPKVKENPMRLALDFDPRLHSDSCLFPSLPLFPFLAS*
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protein sequence of NO28G01250.3

>NO28G01250.3-protein ID=NO28G01250.3-protein|Name=NO28G01250.3|organism=Nannochloropsis oceanica|type=polypeptide|length=448bp
MARLPPPVSSGAAAAAASKKRRREKAGVLELLRRISWLHWAGIVGLVSVV
LGGRHFFRKIDDAEALIQGADDAYQRGNRLFQKGNKERAKHHYMKAVTLF
PKHVYAWSNLGTVLRELGELQGSVEAHKQALALIPKARNHYNLAVSYQSQ
GENKAAISSYRTALSLDETGIPDAYFNLGVALQEEGHLEDANAAYLRAYS
LDPSNAGAWGNHCNILQSLEGKEGGMEDEEEKTDEEAGKEEGKDVGRVET
CYRHLILAHPSYDRAYVNLGGYFYIKGDLEKAAALYMKALEINPENAIAI
HALGALQGEKLEGASLDYLSELFDSYSATFDASLHALEYKSPELMRRAVD
RYLGSPEGKELAPKGPVWNVLDAGCGTGLSGVLFRNLSSHLMGVDVSMRM
AQKAEARGVYDELSVGDMAEELLARAGSLDLVTHWDPTLPLFLCMSH*
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protein sequence of NO28G01250.2

>NO28G01250.2-protein ID=NO28G01250.2-protein|Name=NO28G01250.2|organism=Nannochloropsis oceanica|type=polypeptide|length=548bp
MARLPPPVSSGAAAAAASKKRRREKAGVLELLRRISWLHWAGIVGLVSVV
LGGRHFFRKIDDAEALIQGADDAYQRGNRLFQKGNKERAKHHYMKAVTLF
PKHVYAWSNLGTVLRELGELQGSVEAHKQALALIPKARNHYNLAVSYQSQ
GENKAAISSYRTALSLDETGIPDAYFNLGVALQEEGHLEDANAAYLRAYS
LDPSNAGAWGNHCNILQSLEGKEGGMEDEEEKTDEEAGKEEGKDVGRVET
CYRHLILAHPSYDRAYVNLGGYFYIKGDLEKAAALYMKALEINPENAIAI
HALGALQGEKLEGASLDYLSELFDSYSATFDASLHALEYKSPELMRRAVD
RYLGSPEGKELAPKGPVWNVLDAGCGTGLSGVLFRNLSSHLMGVDVSMRM
AQKAEARGVYDELSVGDMAEELLARAGSLDLIISADVMVYMGRLDYILGT
TSKALKDETGLFVFTLESLEEVPKTEIAEDRETESDEGWLLRPTGRYAHR
REYVEELLGKVGMEVVSVEAVVGRKDKGQPIPGWLFLCRKRREHIKI*
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protein sequence of NO28G01250.1

>NO28G01250.1-protein ID=NO28G01250.1-protein|Name=NO28G01250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=457bp
MARLPPPVSSGAAAAAASKKRRREKAGVLELLRRISWLHWAGIVGLVSVV
LGGRHFFRKIDDAEALIQGADDAYQRGNRLFQKGNKERAKHHYMKAVTLF
PKHVYAWSNLGTVLRELGELQGSVEAHKQALALIPKARNHYNLAVSYQSQ
GENKAAISSYRTALSLDETGIPDAYFNLGVALQEEGHLEDANAAYLRAYS
LDPSNAGAWGNHCNILQSLEGKEGGMEDEEEKTDEEAGKEEGKDVGRVET
CYRHLILAHPSYDRAYVNLGGYFYIKGDLEKAAALYMKALEINPENAIAI
HALGALQGEKLEGASLDYLSELFDSYSATFDASLHALEYKSPELMRRAVD
RYLGSPEGKELAPKGPVWNVLDAGCGTGLSGVLFRNLSSHLMGVDVSMRM
AQKAEARGVYDELSVGDMAEELLARAGSLDLVTHWDPTLPLFLYHFCRCH
GVHGPT*
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