NO28G01250, NO28G01250 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO28G01250 vs. NCBI_GenBank
Match: EWM20867.1 (tpr repeat-containing protein [Nannochloropsis gaditana]) HSP 1 Score: 355.1 bits (910), Expect = 3.800e-94 Identity = 203/398 (51.01%), Postives = 235/398 (59.05%), Query Frame = 0 Query: 28 VLELLRRISWLHWAGIVGLVSVVLGGRHFFRKIDDAEALIQGADDAYQRGNRLFQKGNKERAKHHYMKAVTLFPKHVYAWSNLGTVLRELGELQGSVEAHKQA------------------------------------------------------------------------LALIPKARNHYNLAVSYQSQGENKAAISSYRTALSLDETGIPDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSNAGAWGNHCNILQSLEGKEGGMXXXXXXXXXXXXXXXXXXXXRVETCYRHLILAHPSYDRAYVNLGGYFYIKGDLEKAAALYMKALEINPENAIAIHALGALQGEKLEGASLDYLSELFDSYSATFDASLHALEYKSPELMRRAVDRYL 354 +L LR +SW+H AGIVGL SV+LG RHF R++D AEALIQ ADDAYQRGN LFQ+G KE+A+ Y +AV LFPKHVYAWSNLGTV RELG+LQGS+ AH++ L L+P R HYN+AVS+QS +N AAI+SYRTA+SL+ G+PDA SNAGA GNHCNILQS+EG+EGG RVE CY LI AHP YDRAYVNLGGY+Y +G++EK+AA YMKALE NP+NAIA HALGAL GEKLEGASL YL+ELFDSYSATFDASLHALEYKSPEL+RRAVD L Sbjct: 36 MLSYLRGLSWMHLAGIVGLASVILGVRHFVRQVDVAEALIQNADDAYQRGNALFQRGQKEKARAAYERAVRLFPKHVYAWSNLGTVRRELGDLQGSLAAHQEVERXXXXXXXXXXXRGPGGLLFNGNTSKRISHSHDFILPGDLWSRDLVSPPLSLLRXXXXXXXXXXXXXXXXXLELLPSPRYHYNVAVSHQSLADNPAAIASYRTAISLNPDGLPDAYFNLGVALQEEGDLQEASRAYLRAYAIDPSNAGAMGNHCNILQSVEGREGG--GSEQAGEDVGEGGEEAGVGRVEGCYLRLIRAHPEYDRAYVNLGGYYYTQGEMEKSAAWYMKALEHNPKNAIAAHALGALGGEKLEGASLAYLAELFDSYSATFDASLHALEYKSPELLRRAVDGLL 431
BLAST of NO28G01250 vs. NCBI_GenBank
Match: WP_056007457.1 (tetratricopeptide repeat protein [Frateuria sp. Soil773] >KRE88300.1 methyltransferase [Frateuria sp. Soil773]) HSP 1 Score: 170.6 bits (431), Expect = 1.300e-38 Identity = 111/292 (38.01%), Postives = 154/292 (52.74%), Query Frame = 0 Query: 251 CYRHLILAHPSYDRAYVNLGGYFYIKGDLEKAAALYMKALEINPENAIAIHALGALQGEKLEGASLD-YLSELFDSYSATFDAS-LHALEYKSPELMRRAVDRYLGSPEGKELAPKGPVWNVLDAGCGTGLSGVLFRNLSSHLMGVDVSMRMAQKAEARGVYDELSVGDMAEELLARAGSLDLIISADVMVYMGRLDYILGTTSKALKDETGLFVFTLESLEEVPKTEIAEDRETESDEGWLLRPTGRYAHRREYVEELLGKVGMEVVSVEAVVGRKDKGQPIPGWLFLCRK 541 C+R P RA LG Y G +AA +Y L P+N + H L A G + + D Y+ E+FD ++ +FD LH L Y++P+++ A+ R L +P G +VLDAGCGTGL L R + HL GVD+S M KA RG YDEL+V ++ L A GS DL++SAD +VY G L +LG +AL+ G FTLE+LE ED +E L +GRY H R YVE +LG+ G V + A R++ G+ + GW+ L R+ Sbjct: 155 CFREAHRLDPGNVRALEGLGVSLYTLGRHAEAARVYRDWLASEPDNPVPRHMLAACGGAEAPPRADDAYVREVFDGFADSFDEQLLHNLGYRAPQVLVDALARRLPAPSG--------ALDVLDAGCGTGLCAPLIRPHARHLAGVDLSGGMVDKAHLRGGYDELAVAELTAWLQAHPGSYDLVLSADTLVYFGELGPVLGAAHEALR-PGGQVAFTLEALE-------TEDDRSE------LSSSGRYRHTRRYVERVLGEAGFGGVEIAADTLRREAGREVVGWVVLARR 424
BLAST of NO28G01250 vs. NCBI_GenBank
Match: CEM39171.1 (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 167.5 bits (423), Expect = 1.100e-37 Identity = 153/507 (30.18%), Postives = 230/507 (45.36%), Query Frame = 0 Query: 46 LVSVVLGGRHFFRKIDDAEALIQ-GADDAYQRGNRLFQKGNKERAKHHYMKAVTLFPKHVYAWSNLGTVLRELGELQGSVEAHKQALALIPKARNHYNLAVSYQSQGENKAAISSYRTALSLDET----GIPDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSNAGAWGNHCNILQSLEGKEGGMXXXXXXXXXXXXXXXXXXXXRVETCYRHLILAHPSYDRAYVNLGGYFYIKGD-LEKAAALYMKALEINPENAIAIHALGALQGEK-LEGASLDYLSELFDSYSATFDASLHALEYKSPELMRRAVDRYLGSPEGKELAPKGPVWNVLDAGCGTGLSGVLFRNLSSHLMGVDVSMRMAQKAEARGVYDELSVGDMAEELLARA-----GSLDLIISADVMVYMGRLDYILGTTSKAL-KDETGLFVFTLESLEEVPKTEIAEDRETESDEGWLLRPTGRYAHRREYVEELLGKVGMEVVSVEAVVGRKDKGQPIPGWLFLCR 540 +VS++ G +I DA AL + G+ + KG+ + A+ + AV P H A NLGTVL + +++ ++QA+A +A ++S+ S S+Y T SL E I +N H + + L + G Y + A R Y Y G +E AA + +AL + N+IA ++L ++Q + L AS DY+ LFD Y+ TFD SL L Y++P ++R AVDR S L P+ NVLD GCGTGLSG +FRN+++ L G D+S M + AE +GVY+ VGD+ A A G +DLI +ADV+VY+G L +S+ + KD G F++E L +E+ D E D+G+ ++ TGR+AH REYV G+ G + E + R + G+P+ G LF+ R Sbjct: 55 IVSLLEGVDESNGEIKDASALAELRVSVLCNMGSLMVDKGDLDEARRLFEAAVAFQPDHADALFNLGTVLHDTHHYWEAIDRYEQAIA--AEAAMSEMPSLSWTSVASAANMGSAYETLESLPEAVETYQIAMEILDGLMGDLTDQTEIDARSARRGDGAAFLTNEEISQMHTRLAEGLLRIQAG-------------------------TYTYWEEAGKEGTRKY----KYECSPGSCVELAAEHFRRALRFDKSNSIADYSLRSMQKDSTLTEASPDYVKSLFDHYADTFDKSLQKLHYQAPLMIRMAVDRLQES-----LLVAYPLRNVLDVGCGTGLSGQVFRNVTTFLYGFDLSPEMIRLAEEKGVYNATHVGDLQSGFGALAGHGLHGKVDLITAADVLVYVGDLREFFQRSSEVIRKDGRGFLAFSVEEL----TSELTSD---EEDKGYQVQTTGRFAHTREYVVREGGRWGFSAMYGERIYPRFEYGEPVKGLLFVLR 518
BLAST of NO28G01250 vs. NCBI_GenBank
Match: WP_004367907.1 (tetratricopeptide repeat protein [Thauera phenylacetica] >ENO96163.1 hypothetical protein C667_15389 [Thauera phenylacetica B4P]) HSP 1 Score: 165.6 bits (418), Expect = 4.300e-37 Identity = 98/268 (36.57%), Postives = 150/268 (55.97%), Query Frame = 0 Query: 269 LGGYFYIKGDLEKAAALYMKALEINPENAIAIHALGALQGEKLEG-ASLDYLSELFDSYSATFDASLHALEYKSPELMRRAVDRYLGSPEGKELAPKGPVWNVLDAGCGTGLSGVLFRNLSSHLMGVDVSMRMAQKAEARGVYDELSVGDMAEELLARAGSLDLIISADVMVYMGRLDYILGTTSKALKDETGLFVFTLESLEEVPKTEIAEDRETESDEGWLLRPTGRYAHRREYVEELLGKVGMEVVSVEAVVGRKDKGQPIPGWL 536 LG +Y G+ +KAA +Y L P+N IA H L A GE + A+ DY+ FD+++++FD L L Y++P + +A++ G+P + ++LDAGCGTGL G L R + L GVD+S +M Q+AE R VYD+L+ ++ L AR + D+++SAD + Y G L +L AL+ LF FT+E++ R+ ++ ++L+P GRYAH R++V E L G E A V R + G+P+ GWL Sbjct: 189 LGLAYYTLGEFDKAAEVYRSWLADEPDNPIARHHLAACTGEAVPARAADDYVERTFDAFASSFDEKLQRLHYRAPMQVAQALEDACGAPAAR--------LDILDAGCGTGLCGPLVRAHARRLEGVDLSAQMLQRAECRRVYDQLNKAELGAFLAARPAAWDVVLSADTLCYFGELGPVLAAAHGALRRGGRLF-FTVEAV-----------RDEDAGPPFVLQPNGRYAHTRDHVVEALVAAGFEAALPSAQVLRTEGGEPVAGWL 436
BLAST of NO28G01250 vs. NCBI_GenBank
Match: WP_047787599.1 (methyltransferase domain-containing protein [Variovorax paradoxus] >KLN52284.1 trans-aconitate 2-methyltransferase [Variovorax paradoxus]) HSP 1 Score: 165.6 bits (418), Expect = 4.300e-37 Identity = 98/263 (37.26%), Postives = 141/263 (53.61%), Query Frame = 0 Query: 277 GDLEKAAALYMKALEINPENAIAIHALGALQGEKLEGASLDYLSELFDSYSATFDASLHALEYKSPELMRRAVDRYLGSPEGKELAPKGPVWNVLDAGCGTGLSGVLFRNLSSHLMGVDVSMRMAQKAEARGVYDELSVGDMAEELLARAGSLDLIISADVMVYMGRLDYILGTTSKALKDETGLFVFTLESLEEVPKTEIAEDRETESDEGWLLRPTGRYAHRREYVEELLGKVGMEVVSVEAVVGRKDKGQPIPGWLFLCR 540 G+ E+A +Y + L +P N + H L A +G AS Y+ +FDSY+ +FDASL L Y++PEL+ AV G+P LA V+DAGCGTGL L R ++HL G D+S+ M Q+AE RG YD L ++ L + G DL+ISAD + Y G L +L ++AL+ E G+ VFT+E++ + + L +GRY H +VE L G V +E +V R++ GQ + GWL R Sbjct: 200 GESERAVGMYREWLAEDPGNPVVTHLLAACEGHAPARASDGYVETVFDSYAGSFDASLEKLHYRAPELVAHAVQEMHGAP-AASLA-------VVDAGCGTGLCAPLLRPWAAHLAGCDLSVGMLQRAEQRGGYDVLHKAELTHYLHTQPGRFDLVISADTLCYFGDLREVLAAAARALRPEGGV-VFTVEAM-------------PGGQDDFRLEGSGRYRHAAAHVEARLAAAGFGAVRIEPIVPRREAGQDVQGWLASAR 440
BLAST of NO28G01250 vs. NCBI_GenBank
Match: WP_021005297.1 (methyltransferase domain-containing protein [Variovorax paradoxus] >AGU47736.1 putative methyltransferase [Variovorax paradoxus B4]) HSP 1 Score: 164.9 bits (416), Expect = 7.300e-37 Identity = 97/263 (36.88%), Postives = 142/263 (53.99%), Query Frame = 0 Query: 277 GDLEKAAALYMKALEINPENAIAIHALGALQGEKLEGASLDYLSELFDSYSATFDASLHALEYKSPELMRRAVDRYLGSPEGKELAPKGPVWNVLDAGCGTGLSGVLFRNLSSHLMGVDVSMRMAQKAEARGVYDELSVGDMAEELLARAGSLDLIISADVMVYMGRLDYILGTTSKALKDETGLFVFTLESLEEVPKTEIAEDRETESDEGWLLRPTGRYAHRREYVEELLGKVGMEVVSVEAVVGRKDKGQPIPGWLFLCR 540 G+ E+A +Y + L +P N + H L A +G AS Y+ +FDSY+ +FDASL L Y++PEL+ AV G+P + LA V+DAGCGTGL L R ++HL G D+S+ M Q+A+ RG YD L ++ L + G DL+ISAD + Y G L +L ++AL+ E G+ VFT+E++ + + L +GRY H +VE L G V +E +V R++ GQ + GWL R Sbjct: 200 GESEQAVGMYREWLAEDPGNPVVTHLLAACEGHAPARASDGYVETVFDSYAGSFDASLEKLHYRAPELVAHAVQEMHGAP-AESLA-------VVDAGCGTGLCAPLLRPWAAHLAGCDLSVGMLQRAQQRGGYDVLHKAELTHYLHTQPGRFDLVISADTLCYFGDLREVLAAAARALRPEGGV-VFTVEAM-------------PGGQDDFRLEGSGRYRHAAAHVEARLAAAGFGAVRIEPIVPRREAGQDVQGWLASAR 440
BLAST of NO28G01250 vs. NCBI_GenBank
Match: WP_062363587.1 (methyltransferase domain-containing protein [Variovorax paradoxus]) HSP 1 Score: 163.7 bits (413), Expect = 1.600e-36 Identity = 97/263 (36.88%), Postives = 142/263 (53.99%), Query Frame = 0 Query: 277 GDLEKAAALYMKALEINPENAIAIHALGALQGEKLEGASLDYLSELFDSYSATFDASLHALEYKSPELMRRAVDRYLGSPEGKELAPKGPVWNVLDAGCGTGLSGVLFRNLSSHLMGVDVSMRMAQKAEARGVYDELSVGDMAEELLARAGSLDLIISADVMVYMGRLDYILGTTSKALKDETGLFVFTLESLEEVPKTEIAEDRETESDEGWLLRPTGRYAHRREYVEELLGKVGMEVVSVEAVVGRKDKGQPIPGWLFLCR 540 G+ ++A +Y + L +P N + H L A +G+ AS Y+ +FDSY+ +FDASL L Y++PEL+ +AV + G+P LA V+DAGCGTGL L R ++HL G D+S+ M Q+AE RG YD L ++ L + G DL+ISAD + Y G L +L +AL+ E G+ VFT+E++ + L +GRY H +VE L G V +E +V R++ GQ + GWL R Sbjct: 200 GEHDQALGMYREWLAEDPGNPVVTHLLAACEGQAPARASDGYVETVFDSYAGSFDASLEKLHYRAPELVAQAVQQMHGAP-AASLA-------VVDAGCGTGLCAPLLRPWAAHLAGCDLSVGMLQRAEQRGGYDVLHKAELTHYLHTQPGRFDLVISADTLCYFGDLHEVLAAAERALRPEGGV-VFTVEAM-------------PGGQHDFRLEGSGRYRHAAAHVEACLAAAGFCAVRIEPIVPRREAGQDVQGWLASAR 440
BLAST of NO28G01250 vs. NCBI_GenBank
Match: WP_074632020.1 (MULTISPECIES: tetratricopeptide repeat protein [Nitrosospira] >SDQ67985.1 Predicted methyltransferase, contains TPR repeat [Nitrosospira multiformis] >PTN05353.1 putative TPR repeat methyltransferase [Nitrosospira sp. Nsp6] >PTR08966.1 putative TPR repeat methyltransferase [Nitrosospira sp. Nsp5]) HSP 1 Score: 163.3 bits (412), Expect = 2.100e-36 Identity = 92/248 (37.10%), Postives = 139/248 (56.05%), Query Frame = 0 Query: 294 PENAIAIHALGALQGEKL-EGASLDYLSELFDSYSATFDASLHALEYKSPELMRRAVDRYLGSPEGKELAPKGPVWNVLDAGCGTGLSGVLFRNLSSHLMGVDVSMRMAQKAEARGVYDELSVGDMAEELLARAGSLDLIISADVMVYMGRLDYILGTTSKALKDETGLFVFTLESLEEVPKTEIAEDRETESDEGWLLRPTGRYAHRREYVEELLGKVGMEVVSVEAVVGRKDKGQPIPGWLFLCRK 541 PE+ +A H L A G+ + AS +Y+ FD ++ +FDA L L Y++P+L+ A+ R G PE + +A LDAGCGTGL G L L+GVD+S M KA R YDEL ++ LL ++G+ +LI+SAD +VY G L+ +LG +AL+ E GL +FT+E+ I + T G+ + P GRY+H EY+ ++L G + ++E+ V R + G + GW+ RK Sbjct: 222 PESPVAKHMLSACSGKNVPPRASDEYVESTFDRFADSFDAKLEKLAYRAPDLIAEALARACGEPEKRLMA--------LDAGCGTGLCGPLIAQYVHRLVGVDLSSGMLAKARGRNAYDELIKSELTTYLLTQSGAFNLIVSADTLVYFGSLEEVLGAAHQALQ-EGGLLIFTVEA---ATHEAINKATNTAVSTGYRINPHGRYSHSNEYLRQVLPAAGFSMFAIESAVLRMEGGSAVAGWVVTSRK 457
BLAST of NO28G01250 vs. NCBI_GenBank
Match: WP_013539033.1 (methyltransferase domain-containing protein [Variovorax paradoxus] >ADU34787.1 Methyltransferase type 11 [Variovorax paradoxus EPS]) HSP 1 Score: 162.9 bits (411), Expect = 2.800e-36 Identity = 94/260 (36.15%), Postives = 138/260 (53.08%), Query Frame = 0 Query: 280 EKAAALYMKALEINPENAIAIHALGALQGEKLEGASLDYLSELFDSYSATFDASLHALEYKSPELMRRAVDRYLGSPEGKELAPKGPVWNVLDAGCGTGLSGVLFRNLSSHLMGVDVSMRMAQKAEARGVYDELSVGDMAEELLARAGSLDLIISADVMVYMGRLDYILGTTSKALKDETGLFVFTLESLEEVPKTEIAEDRETESDEGWLLRPTGRYAHRREYVEELLGKVGMEVVSVEAVVGRKDKGQPIPGWLFLCR 540 E+A +Y + L +P N + H L A +G AS Y+ LFDSY+ +FDASL L Y++PEL+ RAV G P + V+DAGCGTGL L R +SH+ G D+S+ M Q+AE RG YD L ++ L + G DL+ SAD + Y G L +L ++AL+ E G+ FT+E+++ P + L +GRY H +VE L G + + +E +V R++ G+ + GWL R Sbjct: 203 EQAIRMYREWLAEDPGNPVVAHLLAACEGHAPARASDGYVETLFDSYAGSFDASLEKLHYRAPELVARAVRDMFGPPAARIA--------VVDAGCGTGLCAPLLRPWASHMAGCDLSVGMLQRAEQRGGYDVLHKAELTHYLHTQPGRFDLVASADTLCYFGDLHEVLAAAARALRPEGGV-AFTVEAMDGGP-------------NDFRLEGSGRYRHAAAHVEACLAAAGFDAIRIEPIVPRREAGRNVQGWLASAR 440
BLAST of NO28G01250 vs. NCBI_GenBank
Match: WP_018904070.1 (methyltransferase domain-containing protein [Variovorax paradoxus]) HSP 1 Score: 162.9 bits (411), Expect = 2.800e-36 Identity = 96/263 (36.50%), Postives = 143/263 (54.37%), Query Frame = 0 Query: 277 GDLEKAAALYMKALEINPENAIAIHALGALQGEKLEGASLDYLSELFDSYSATFDASLHALEYKSPELMRRAVDRYLGSPEGKELAPKGPVWNVLDAGCGTGLSGVLFRNLSSHLMGVDVSMRMAQKAEARGVYDELSVGDMAEELLARAGSLDLIISADVMVYMGRLDYILGTTSKALKDETGLFVFTLESLEEVPKTEIAEDRETESDEGWLLRPTGRYAHRREYVEELLGKVGMEVVSVEAVVGRKDKGQPIPGWLFLCR 540 G+ ++A +Y + L +P N + H L A +G+ AS Y+ +FDSY+ +FDASL L Y++PEL+ +AV + G+P LA V+DAGCGTGL L R ++HL G D+S+ M Q+AE RG YD L ++ L + G DL+ISAD + Y G L +L ++AL+ G+ VFT+E++ + + L +GRY H +VE L G V +E +V R++ GQ + GWL R Sbjct: 200 GEHDQALGMYREWLAEDPGNPVVTHLLAACEGQAPARASDGYVETVFDSYAGSFDASLEKLHYRAPELVAQAVQQMHGAP-AASLA-------VVDAGCGTGLCAPLLRPWAAHLAGCDLSVGMLQRAEQRGGYDVLHKAELTHYLHTQPGRFDLVISADTLCYFGDLHEVLAAAARALRPAGGV-VFTVEAM-------------PGGRDSFRLEGSGRYRHAAAHVEACLAAAGFGAVRIEPIVPRREAGQDVQGWLASAR 440 The following BLAST results are available for this feature:
BLAST of NO28G01250 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO28G01250 ID=NO28G01250|Name=NO28G01250|organism=Nannochloropsis oceanica|type=gene|length=5482bpback to top protein sequence of NO28G01250.4 >NO28G01250.4-protein ID=NO28G01250.4-protein|Name=NO28G01250.4|organism=Nannochloropsis oceanica|type=polypeptide|length=399bpback to top protein sequence of NO28G01250.3 >NO28G01250.3-protein ID=NO28G01250.3-protein|Name=NO28G01250.3|organism=Nannochloropsis oceanica|type=polypeptide|length=448bpback to top protein sequence of NO28G01250.2 >NO28G01250.2-protein ID=NO28G01250.2-protein|Name=NO28G01250.2|organism=Nannochloropsis oceanica|type=polypeptide|length=548bpback to top protein sequence of NO28G01250.1 >NO28G01250.1-protein ID=NO28G01250.1-protein|Name=NO28G01250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=457bpback to top Synonyms
Publications
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