NO28G01060, NO28G01060 (gene) Nannochloropsis oceanica

Overview
NameNO28G01060
Unique NameNO28G01060
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2240
Alignment locationchr28:335699..337938 -

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Properties
Property NameValue
DescriptionBrix domain containing 1
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:335699..337938 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007109Brix
Vocabulary: Biological Process
TermDefinition
GO:0016043cellular component organization
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
Homology
BLAST of NO28G01060 vs. NCBI_GenBank
Match: XP_005855118.1 (brix domain containing 1 [Nannochloropsis gaditana CCMP526] >EKU21237.1 brix domain containing 1 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 465.7 bits (1197), Expect = 1.600e-127
Identity = 224/274 (81.75%), Postives = 251/274 (91.61%), Query Frame = 0
Query:  130 KAKEPKVVEGGKQALFLKGTKCPELLQTVLRDLTKLLKPNSKMLSRKNEIRPFEDTSSLEFLMDKNECALFCFASHSKKRPHNLILGRTYDKHMLDMIEFGCSSVEGLDSFKEMEKKRYGSKPCLVFVGEGWHQDLTLERVQNLFMDFFRVDDVDKVALAGIDALTSFTALGTDSILIRNYHVQYKKSGGRVPNVVLQPMGPNFTLTVRRHQLAAPDLWRTACKQPRGEGVKKKVKNESTNVFGDKLGRIHVGRQDLGAMKVKRMKALRKGRDE 404
            KAKEPK+VE GKQALFLKGTKCP+LLQTVLRDLTKLLKPN+K LSRKNEIRPFED +SLEFL DKN+CALFCF SHSKKRP NLI+GRTYDKH+LDM+EFG SSVEGLD+ K  EKKR GSKPCLVF G+GWHQD TLER+QNLFMDFFRVD+V+KVALAGIDA+TSFTA+GTDSIL+RNYHV++KKS GRVPNV+L+ MGPNFTLTVRRHQLAAPDLWRTACKQP+G    KKVKNESTNV G+ +GR+HVGRQDL +M+VKR+KALRKGR E
Sbjct:   55 KAKEPKLVEDGKQALFLKGTKCPQLLQTVLRDLTKLLKPNAKFLSRKNEIRPFEDVTSLEFLADKNDCALFCFGSHSKKRPQNLIMGRTYDKHLLDMVEFGVSSVEGLDAVKATEKKRCGSKPCLVFAGDGWHQDATLERIQNLFMDFFRVDEVNKVALAGIDAVTSFTAMGTDSILVRNYHVKFKKSQGRVPNVLLEAMGPNFTLTVRRHQLAAPDLWRTACKQPKGLR-PKKVKNESTNVLGETVGRVHVGRQDLTSMRVKRVKALRKGRGE 327          
BLAST of NO28G01060 vs. NCBI_GenBank
Match: EWM20883.1 (brix domain containing 1 [Nannochloropsis gaditana])

HSP 1 Score: 454.9 bits (1169), Expect = 2.800e-124
Identity = 218/267 (81.65%), Postives = 245/267 (91.76%), Query Frame = 0
Query:  130 KAKEPKVVEGGKQALFLKGTKCPELLQTVLRDLTKLLKPNSKMLSRKNEIRPFEDTSSLEFLMDKNECALFCFASHSKKRPHNLILGRTYDKHMLDMIEFGCSSVEGLDSFKEMEKKRYGSKPCLVFVGEGWHQDLTLERVQNLFMDFFRVDDVDKVALAGIDALTSFTALGTDSILIRNYHVQYKKSGGRVPNVVLQPMGPNFTLTVRRHQLAAPDLWRTACKQPRGEGVKKKVKNESTNVFGDKLGRIHVGRQDLGAMKVKRMKA 397
            KAKEPK+VE GKQALFLKGTKCP+LLQTVLRDLTKLLKPN+K LSRKNEIRPFED +SLEFL DKN+CALFCF SHSKKRP NLI+GRTYDKH+LDM+EFG SSVEGLD+ K  EKKR GSKPCLVF G+GWHQD TLER+QNLFMDFFRVD+V+KVALAGIDA+TSFTA+GTDSIL+RNYHV++KKS GRVPNV+L+ MGPNFTLTVRRHQLAAPDLWRTACKQP+G    KKVKNESTNV G+ +GR+HVGRQDL +M+VKR+KA
Sbjct:   55 KAKEPKLVEDGKQALFLKGTKCPQLLQTVLRDLTKLLKPNAKFLSRKNEIRPFEDVTSLEFLADKNDCALFCFGSHSKKRPQNLIMGRTYDKHLLDMVEFGVSSVEGLDAVKATEKKRCGSKPCLVFAGDGWHQDATLERIQNLFMDFFRVDEVNKVALAGIDAVTSFTAMGTDSILVRNYHVKFKKSQGRVPNVLLEAMGPNFTLTVRRHQLAAPDLWRTACKQPKGLR-PKKVKNESTNVLGETVGRVHVGRQDLTSMRVKRVKA 320          
BLAST of NO28G01060 vs. NCBI_GenBank
Match: CBJ29198.1 (brix domain containing 1 [Ectocarpus siliculosus])

HSP 1 Score: 266.9 bits (681), Expect = 1.100e-67
Identity = 131/269 (48.70%), Postives = 183/269 (68.03%), Query Frame = 0
Query:  130 KAKEPKVVEGGKQALFLKGTKCPELLQTVLRDLTKLLKPNSKMLSRKNEIRPFEDTSSLEFLMDKNECALFCFASHSKKRPHNLILGRTYDKHMLDMIEFGCSSVEGLDSFKEMEKKRYGSKPCLVFVGEGWHQDLTLERVQNLFMDFFRVDDVDKVALAGIDALTSFTALGTDSILIRNYHVQYKKSGGRVPNVVLQPMGPNFTLTVRRHQLAAPDLWRTACKQPRGEGVKKKVKNESTNVFGDKLGRIHVGRQDLGAMKVKRMKALR 399
            + +EP+V E  K A+ +KG K  + +   L+D+ +L  P++ M S+KN+  P ED +S EFLM KN+C+LFCF SH+KKRP+N++LGRT+D HMLDMIE G     GL     +  KR GSKP  VF GE W ++    ++QNL +DFFR   V++VALAG+D     TA   D + +R+YH+ +++SG ++P+V L+ MGP+  L +RR   AA DLW+ + K+PR     +K KN S N FGDKLGRIH+GRQDL +MKV+R+KALR
Sbjct:   20 RKREPQVHENAKTAIIIKGRKTSQDVTDALKDIYRLKSPDAVMFSKKNDTNPMEDETSAEFLMSKNDCSLFCFGSHNKKRPNNVVLGRTFDGHMLDMIELGLVQYRGLGELAGL-AKRVGSKPAFVFSGEKWGREEAYRKLQNLLLDFFRGQVVNEVALAGLDHCVVCTA-AQDKVYVRHYHIGFQRSGSKIPSVDLKEMGPSLDLQIRRTSFAAKDLWKASVKKPR-VAETRKTKNVSANQFGDKLGRIHLGRQDLSSMKVRRVKALR 285          
BLAST of NO28G01060 vs. NCBI_GenBank
Match: EJK64192.1 (hypothetical protein THAOC_15096 [Thalassiosira oceanica])

HSP 1 Score: 249.6 bits (636), Expect = 1.800e-62
Identity = 129/281 (45.91%), Postives = 181/281 (64.41%), Query Frame = 0
Query:  130 KAKEPKVVEGGKQALFLKGTKCPELLQTVLRDLTKLLKPNSKMLSRKNEIRPFEDT--SSLEFLMDKNECALFCFASHSKKRPHNLILGRTYDKHMLDMIEFGCSSVEGLDSFKEMEKKRYGSKPCLVFVGEGWHQDLTLERVQNLFMDFFRVDDVDKVALAGIDALTSFTALGTD--------SILIRNYHVQYKK--SGGRVPNVVLQPMGPNFTLTVRRHQLAAPDLWRTACKQPRGEGVKKKVKNESTNVFGDKLGRIHVGRQDLGAMKVKRMKALR 399
            K  E ++VEGGK +L LKG +C E + TVL+D+  +  P++K+LS+ N I PF+D    SLEFL  KN+  +F  ASH+KKRP+NL+LGRT+D+ +LDM+E G      L  F  + KKR GSKP L FVG+ W  D+ L+R+QNL +DF+R D VD + L+G+D +  FTA+            I  R Y+++ K+   GG  P   L P GP+    +RR Q A+PDLW+ A KQP+G   KKK KN++TNVFG+ +GR+H+ +QD+     K+ KALR
Sbjct:   31 KTTESQLVEGGKGSLLLKGIRCSESMSTVLKDMRSVQAPHAKLLSKNNLIVPFDDAGQQSLEFLTTKNDATVFAMASHNKKRPNNLVLGRTFDRRVLDMVEIGILQYRSLSDFGGLPKKRLGSKPLLQFVGDLWSSDVNLKRLQNLMIDFYRGDPVDSLVLSGLDHVIVFTAVEASVGGQEAFPMIHQRTYYMKLKRDPQGGVAPVPYLTPSGPDMDFKIRRTQFASPDLWKLAMKQPQGIKAKKK-KNQTTNVFGETIGRLHLDKQDIDNRSGKKSKALR 310          
BLAST of NO28G01060 vs. NCBI_GenBank
Match: XP_002288799.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED94235.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 249.2 bits (635), Expect = 2.300e-62
Identity = 129/282 (45.74%), Postives = 180/282 (63.83%), Query Frame = 0
Query:  130 KAKEPKVVEGGKQALFLKGTKCPELLQTVLRDLTKLLKPNSKMLSRKNEIRPFED--TSSLEFLMDKNECALFCFASHSKKRPHNLILGRTYDKHMLDMIEFGCSSVEGLDSFKEMEKKRYGSKPCLVFVGEGWHQDLTLERVQNLFMDFFRVDDVDKVALAGIDALTSFTAL---------GTDSILIRNYHVQYKK--SGGRVPNVVLQPMGPNFTLTVRRHQLAAPDLWRTACKQPRGEGVKKKVKNESTNVFGDKLGRIHVGRQDLGAMKVKRMKALR 399
            K  EP++VEG K AL LKG KC E + TVL+D+  +  P+SK+LS+ N I PF+D    SLEFL  KN+ ALF  ASH+KKRP+NL+LGRT+D+ +LDM+E G      +  F  + KKR GSKP L FVG+ W  D+ L+R+QNL +DF+R D VD + ++G+D +  FTA              I  R Y+++ KK   GG+ P   L P GP+    +RR + A+PDLW+ A KQP     KKK KN++TN+FG+ +GR+H+ +Q++     K+ KALR
Sbjct:   31 KTTEPQLVEGAKNALLLKGIKCSENMSTVLKDMRSVQSPHSKLLSKNNMIVPFDDEGQQSLEFLTTKNDAALFALASHNKKRPNNLVLGRTFDRRVLDMVEIGILQYRSVGDFPGLPKKRLGSKPLLQFVGDLWQSDVNLKRLQNLLVDFYRGDPVDSLIVSGLDHVMVFTAAEASFGGQQENMPIIHQRTYYMKLKKDPKGGKAPAPYLTPSGPDMDFKIRRTKFASPDLWKLAMKQPTTNKAKKK-KNQTTNLFGETIGRLHLEKQNIDNRSGKKSKALR 311          
BLAST of NO28G01060 vs. NCBI_GenBank
Match: XP_002590285.1 (hypothetical protein BRAFLDRAFT_121353 [Branchiostoma floridae] >EEN46296.1 hypothetical protein BRAFLDRAFT_121353 [Branchiostoma floridae])

HSP 1 Score: 244.6 bits (623), Expect = 5.800e-61
Identity = 124/270 (45.93%), Postives = 176/270 (65.19%), Query Frame = 0
Query:  130 KAKEPKVVEGGKQALFLKGTKCPELLQTVLRDLTKLLKPNSKMLSRKNEIRPFEDTSSLEFLMDKNECALFCFASHSKKRPHNLILGRTYDKHMLDMIEFGCSSVEGLDSFKEMEKKRYGSKPCLVFVGEGWHQDLTLERVQNLFMDFFRVDDVDKVALAGIDALTSFTALGTDSILIRNYHVQYKKSGGRVPNVVLQPMGPNFTLTVRRHQLAAPDLWRTACKQPRGEGVKKKVKNESTNVFGDKLGRIHVGRQDLGAMKVKRMKALRK 400
            + + PK+ E  K A+F+KG    E +  VL++L  L KPN+    RKN +RPF+D SS+EF   KN+ +LF F SHSKKRP+NL+LGR YD H+LDM+E G +    +  F   EK   G+KPCLVF GE + QD    R++N+ +DFFR    + V L G++ +  FTAL    +++R+Y V  KKSG R P V L  +GP   L VRR +LA+ DL++ ACK+P+ +G  KKVKN  T+VFG K+GR+H+ RQD   ++ ++MK L++
Sbjct:   21 EVRAPKLEENDKVAMFIKGGHTSETITQVLKELYLLKKPNAITFKRKNIMRPFDDQSSIEFFSQKNDSSLFLFGSHSKKRPNNLVLGRLYDHHVLDMVELGVTHFRSMQDF-PTEKIAMGTKPCLVFEGEAFEQDHKHRRLKNMLIDFFRGVKANNVRLQGLEHVLQFTAL-DGKVMVRSYKVLLKKSGSRTPRVELSEIGPALDLEVRRTRLASDDLYKKACKKPK-KGKPKKVKNVKTDVFGAKMGRVHMERQDFSKLQTRKMKGLKR 287          
BLAST of NO28G01060 vs. NCBI_GenBank
Match: XP_019627838.1 (PREDICTED: ribosome production factor 2 homolog [Branchiostoma belcheri])

HSP 1 Score: 244.2 bits (622), Expect = 7.600e-61
Identity = 124/270 (45.93%), Postives = 176/270 (65.19%), Query Frame = 0
Query:  130 KAKEPKVVEGGKQALFLKGTKCPELLQTVLRDLTKLLKPNSKMLSRKNEIRPFEDTSSLEFLMDKNECALFCFASHSKKRPHNLILGRTYDKHMLDMIEFGCSSVEGLDSFKEMEKKRYGSKPCLVFVGEGWHQDLTLERVQNLFMDFFRVDDVDKVALAGIDALTSFTALGTDSILIRNYHVQYKKSGGRVPNVVLQPMGPNFTLTVRRHQLAAPDLWRTACKQPRGEGVKKKVKNESTNVFGDKLGRIHVGRQDLGAMKVKRMKALRK 400
            + + PK+ E  K A+F+KG    E +  VL++L  L KPN+    RKN +RPF+D SS+EF   KN+ +LF F SHSKKRP+NL+LGR YD H+LDM+E G  +   +  F   EK   G+KPCLVF GE + QD    R++N+ +DFFR    + V L G++ +  FTAL    +++R+Y V  KKSG R P V L  +GP   L VRR +LA+ DL++ ACK+P+ +G  KKVKN  T+VFG K+GR+H+ RQD   ++ ++MK L++
Sbjct:   21 EVRAPKLEENDKVAMFIKGGHTSETITQVLKELYLLKKPNAISFKRKNIMRPFDDQSSIEFFSQKNDSSLFLFGSHSKKRPNNLVLGRLYDHHVLDMVELGVVNFRSMQDF-PTEKIAMGTKPCLVFEGEAFEQDHEHRRLKNMLIDFFRGVKANNVRLQGLEHVLQFTAL-DGKVMVRSYKVLLKKSGSRTPRVELSEIGPALDLEVRRTRLASDDLYKKACKKPK-KGKPKKVKNVKTDVFGAKMGRVHMERQDFSKLQTRKMKGLKR 287          
BLAST of NO28G01060 vs. NCBI_GenBank
Match: XP_020914138.1 (ribosome production factor 2 homolog [Exaiptasia pallida] >KXJ22791.1 Ribosome production factor 2-like [Exaiptasia pallida])

HSP 1 Score: 243.8 bits (621), Expect = 9.900e-61
Identity = 125/274 (45.62%), Postives = 177/274 (64.60%), Query Frame = 0
Query:  130 KAKEPKVVEGGKQALFLKGTKCPELLQTVLRDLTKLLKPNSKMLSRKNEIRPFEDTSSLEFLMDKNECALFCFASHSKKRPHNLILGRTYDKHMLDMIEFGCSSVEGLDSFKEMEKKRYGSKPCLVFVGEGWHQDLTLERVQNLFMDFFRVDDVDKVALAGIDALTSFTALGTDSILIRNYHVQYKKSGGRVPNVVLQPMGPNFTLTVRRHQLAAPDLWRTACKQPRGEGVKKKVKNESTNVFGDKLGRIHVGRQDLGAMKVKRMKALRKGRDE 404
            +AK PK VE  K+ALF++G +  EL+   L+DL  L KPN+ M  RKN + PFED +SLEF   KN+ +L  + SHSKKRPHNL+LGRT+D H+LD+IE G    + L SF +  K   G+KPCL+F GE +  +L  +R++NL +DFFR    DK+ L G++ +   TA+    +L R+Y    KKSGGR P V L+ MGP F  T+RR +LA+ DL + A K P+      KVKN   + FG K GR+H+ RQD G ++ +++K L++G+ +
Sbjct:   19 EAKSPKAVENTKKALFIRGGRTSELVTQALKDLYALKKPNAVMFQRKNVLLPFEDQTSLEFFSVKNDASLIAYGSHSKKRPHNLVLGRTFDGHVLDLIELGIDRFKTLQSF-QTSKCTVGTKPCLLFSGELFETELEYKRLKNLLIDFFRGTVTDKIRLQGLEHVIQITAI-DKHVLFRSYRTILKKSGGRTPRVELEEMGPAFDFTLRRTRLASEDLMKEATKVPK-VAKPTKVKNVDYDAFGTKTGRVHMTRQDYGKLQTRKLKGLKRGQQD 289          
BLAST of NO28G01060 vs. NCBI_GenBank
Match: XP_013191642.1 (PREDICTED: ribosome production factor 2 homolog [Amyelois transitella])

HSP 1 Score: 241.9 bits (616), Expect = 3.800e-60
Identity = 125/276 (45.29%), Postives = 180/276 (65.22%), Query Frame = 0
Query:  130 KAKEPKVVEGGKQALFLKGTKCPELLQTVLRDLTKLLKPNSKMLSRKNEIRPFEDTSSLEFLMDKNECALFCFASHSKKRPHNLILGRTYDKHMLDMIEFGCSSVEGLDSFKEMEKKRYGSKPCLVFVGEGWHQDLTLERVQNLFMDFFRVDDVDKVALAGIDALTSFTALGTDSILIRNYHVQYKKSGGRVPNVVLQPMGPNFTLTVRRHQLAAPDLWRTACKQPR--GEGVKKKVKNESTNVFGDKLGRIHVGRQDLGAMKVKRMKALRKGRDE 404
            +AKEPK VEG KQ LF++G    E  +++L+D+    KP++  L+RKN+  PFED S +E L DK E ALF   SHSKKRPHN+ILGRT++ H+LDMIE G  + + +  F  M K   G KPCL+F G  W  +  L+R++++F DFF  + V+ + L G++ + SFTA     I +R+Y +  KKSG R P V L+ +GP+    +RR +LAA DL++ AC+ P+    GVK   KN S + FG KLGRIH+G+QD+  ++ ++MK L+K  +E
Sbjct:   20 QAKEPKPVEGPKQCLFMQGRNPSERTRSLLKDIYDFKKPDAAYLTRKNDFVPFEDASLIEKLCDKKEAALFGVGSHSKKRPHNIILGRTFNYHILDMIELGAENFKPMSEFHNM-KVLAGLKPCLLFNGPAWDLNQDLKRLKSVFTDFFHREKVETIRLQGLEHVLSFTATEDGMIYVRSYRISLKKSGQRTPRVELEEIGPSIDFKLRRTKLAADDLYKEACRIPKEAKPGVK---KNISRDAFGSKLGRIHMGKQDIHKLQTRKMKGLKKTPEE 291          
BLAST of NO28G01060 vs. NCBI_GenBank
Match: XP_024081550.1 (ribosome production factor 2 homolog [Cimex lectularius])

HSP 1 Score: 241.1 bits (614), Expect = 6.400e-60
Identity = 122/272 (44.85%), Postives = 186/272 (68.38%), Query Frame = 0
Query:  132 KEPKVVEGGKQALFLKGTKCPELLQTVLRDLTKLLKPNSKMLSRKNEIRPFEDTSSLEFLMDKNECALFCFASHSKKRPHNLILGRTYDKHMLDMIEFGCSSVEGLDSFKEMEKKRYGSKPCLVFVGEGWHQDLTLERVQNLFMDFFRVDDVDKVALAGIDALTSFTALGTDSILIRNYHVQYKKSGGRVPNVVLQPMGPNFTLTVRRHQLAAPDLWRTACKQPRGEGVKKKVKNESTNVFGDKLGRIHVGRQDLGAMKVKRMKALRKGRDE 404
            KEPK++E  KQ+LFL+G KC E L + L+DL +L KP++ M++ KN+  P ++ + LE L  K++ +LF F SHSKKRP+NL++GR YD  +LD++E G    +GL  F + EK   G KPCLVF G  + QD  L R++NLF+D F  ++V  V L G++ + +FT    + I +R+Y V  KKSG R+P V L+ +GP+   ++RR +LA+ DL++ ACK+P+ E   KKVKN S + FG KLGR+H+ +Q++  ++ +++KAL+K R+E
Sbjct:   22 KEPKLIENTKQSLFLRGRKCNETLLSCLKDLYQLKKPDAVMMNGKNDFVPLDNATPLETLSKKSDSSLFFFGSHSKKRPNNLVIGRMYDHQVLDIVELGVDEYKGLKDF-DTEKISVGLKPCLVFSGPKFSQDENLMRIKNLFVDMFHRENVQSVRLQGLEHVLTFTE-SENKIFMRSYRVLLKKSGTRLPRVELEEIGPSIDFSLRRMKLASEDLFKLACKKPK-ELKVKKVKNISRDPFGSKLGRVHIKQQNINKLQTRKLKALKKRREE 290          
The following BLAST results are available for this feature:
BLAST of NO28G01060 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005855118.11.600e-12781.75brix domain containing 1 [Nannochloropsis gaditana... [more]
EWM20883.12.800e-12481.65brix domain containing 1 [Nannochloropsis gaditana... [more]
CBJ29198.11.100e-6748.70brix domain containing 1 [Ectocarpus siliculosus][more]
EJK64192.11.800e-6245.91hypothetical protein THAOC_15096 [Thalassiosira oc... [more]
XP_002288799.12.300e-6245.74predicted protein [Thalassiosira pseudonana CCMP13... [more]
XP_002590285.15.800e-6145.93hypothetical protein BRAFLDRAFT_121353 [Branchiost... [more]
XP_019627838.17.600e-6145.93PREDICTED: ribosome production factor 2 homolog [B... [more]
XP_020914138.19.900e-6145.62ribosome production factor 2 homolog [Exaiptasia p... [more]
XP_013191642.13.800e-6045.29PREDICTED: ribosome production factor 2 homolog [A... [more]
XP_024081550.16.400e-6044.85ribosome production factor 2 homolog [Cimex lectul... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL059nonsL059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR065ncniR065Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR054ncniR054Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR094ngnoR094Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004911NSK004911Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO28G01060.1NO28G01060.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|642970gene_9837Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100201g6gene9528Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO28G01060.1NO28G01060.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO28G01060 ID=NO28G01060|Name=NO28G01060|organism=Nannochloropsis oceanica|type=gene|length=2240bp
GTGGTTTTGTACAAGTGTCGTGACATGAGGTGCGGGGGTGTCGAAACTGG
CGTCGCGTGCGAAATTACGAGCACGTAAGAGGTAAACCAAGGACAAAGTT
GCAGATGTGAGGAACACTTTGTCGTCCAGAGACACAAAGGGAAAAGGCCA
TATAGATTTGCCGTGGTAAGGACAGTAAATAATTGACGCAAACGAGGCCC
ATACGGAAGGACCATCGACGACGTTCAACTCCCTTGCGCGAACAGTGAGG
GGAAGCAAAAGTGGGAGGCACCACTTGACCCATTGTGGTATGCACCCCAC
CTGTCATGCGATGACCATGACATGCAGCATTGCTAGCACGGATACTTATG
CACATCCATGTCTCAACTCGAGGGACGCAATAGTTTTTGTGGCCGATGAA
AACGCGTAAAGTATCCTGTGGCCATCCACTGAACTTCTTTAGCTTCTTTT
GCCCCCTTCACCTTTACCACACACGCGTACCTGCCTTTTTGTTAATGCTG
CCTCTCCACTCTCTACATCCCCTCTACCTTTCTAACCCTGCAATCGATGG
CCTTTTCATCACACATCATCATCATCAGATCATGGCCAACGCCAAAAATG
CCAAGGCCGCCGCCAAGAAGGCTGGGGGAGGCAAGGGGGTCAAGAAGAGG
GCCTCGCCTGCTGCTGCAAAGGGTACTGCTGCTGCCGGCGGTATCAAGGG
GAGCAAGACCGCCGTGAGTGCGGTCAGTGCCAAGAGTCGCGTGACACCCA
AGAAGCCAAAGGCTCGCGTGCTGCGCTTGCTCAAGGCCAAGGAGCCCAAG
GTGGTGGAGGGAGGGAAGCAGGCCCTGTTTCTTAAGGGGACCAAGTGCCC
AGAGCTCTTGCAGACGGTGTTGCGCGATTTGgtgcgttcttggtgtgcaa
ttagagtagaagacatggatgccactatatttcctccttgatcctccata
cttaccctctgcttcctctctccctccgtccctccctccgtctcccctac
taatagACAAAGCTCCTTAAACCGAACTCCAAGATGTTAAGCCGCAAAAA
CGAGATCCGCCCCTTTGAAGACACTTCTTCCCTCGAGTTTTTGATGGACA
AGAATGAATGTGCCTTGTTCTGCTTTGCTTCCCACAGTAAAAAACGGCCC
CACAACCTCATTTTGGGAAGGACGTATGATAAGCATATGCTCGATATGAT
TGAGTTCGGGTGCTCCTCGGTGGAGGGTCTGGACAGCTTTAAGGAGATGG
AGAAGAAGCGGTACGGCTCTAAGCCGTGCTTGGTGTTTGTGGGCGAGGGG
TGGCATCAGGACCTGACGCTGGAGAGGGTGCAGAATCTGTTTATGGgtag
gtggaggactgaggaaagggagggaagaaggactttcagccgtgcgggac
aagtaagtttacgtccggcaactagtaatatgatttaaaacgtaatggca
cttttccttccccttttcccctcctttactctctcccagATTTCTTTCGA
GTGGACGACGTGGACAAGGTGGCCCTGGCCGGGATCGATGCCCTCACCTC
CTTTACTGCCCTGGGGACAGACTCGATCCTCATTAGGAACTATCACGTGC
AGTACAAGAAGTCGGGTGGTAGGGTGCCAAACGTTGTCTTGCAGCCAATG
GGACCCAATTTCACCTTGACTGTCCGGAGGCATCAACTAGCGGCGCCCGA
CCTGTGGAGGACGGCGTGCAAACAACCGCGGGGAGAGGGGGTGAAGAAGA
AGGTGAAAAATGAGTCGACAAATGTATTTGGGGATAAGCTGGGCAGGATC
CACGTGGGCAGGCAGGACCTGGGGGCAATGAAGGTCAAGAGAATGAAGGC
GTTAAGGAAGGGGAGGGATGAAGGGGAGGAGGAGGAAGGAGGGGAGGAGG
GAGAGGAGGAGGAGGCGATGGAGGAGAGCGGGGGGGAAGAATACGATGAT
GATGAAAGAGACTATGGGAGCGACGACGACTAGGTGTGACAGTAGATGAA
CAAACCCCAAAAGTCCGACATTTTTCACGGTATAAAAAAGAAGCAAGAGT
AATGTGTGTTTGCGGTTCGAGGGCTGAGGGCGAGGGAAGCAGAGGGAGAT
GGCCAGAGGCGAATGGAATGTATTTTAAATTAACATTATTTGGTTCAAAT
GGACGGTCTAGCTGCCTCCCTCAATACTGTGACAAGCTCTCGAAGTGGCA
CAGAATGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
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protein sequence of NO28G01060.1

>NO28G01060.1-protein ID=NO28G01060.1-protein|Name=NO28G01060.1|organism=Nannochloropsis oceanica|type=polypeptide|length=440bp
MKTRKVSCGHPLNFFSFFCPLHLYHTRVPAFLLMLPLHSLHPLYLSNPAI
DGLFITHHHHQIMANAKNAKAAAKKAGGGKGVKKRASPAAAKGTAAAGGI
KGSKTAVSAVSAKSRVTPKKPKARVLRLLKAKEPKVVEGGKQALFLKGTK
CPELLQTVLRDLTKLLKPNSKMLSRKNEIRPFEDTSSLEFLMDKNECALF
CFASHSKKRPHNLILGRTYDKHMLDMIEFGCSSVEGLDSFKEMEKKRYGS
KPCLVFVGEGWHQDLTLERVQNLFMDFFRVDDVDKVALAGIDALTSFTAL
GTDSILIRNYHVQYKKSGGRVPNVVLQPMGPNFTLTVRRHQLAAPDLWRT
ACKQPRGEGVKKKVKNESTNVFGDKLGRIHVGRQDLGAMKVKRMKALRKG
RDEGEEEEGGEEGEEEEAMEESGGEEYDDDERDYGSDDD*
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Synonyms
Publications