NO28G00750, NO28G00750 (gene) Nannochloropsis oceanica

Overview
NameNO28G00750
Unique NameNO28G00750
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1448
Alignment locationchr28:254242..255689 -

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Properties
Property NameValue
DescriptionDNAJ heat shock family protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:254242..255689 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036869J_dom_sf
IPR001623DnaJ_domain
Homology
BLAST of NO28G00750 vs. NCBI_GenBank
Match: EWM20936.1 (Heat shock protein DnaJ [Nannochloropsis gaditana])

HSP 1 Score: 161.8 bits (408), Expect = 4.200e-36
Identity = 102/198 (51.52%), Postives = 119/198 (60.10%), Query Frame = 0
Query:   51 SDDEDLSLYDILGLTRTCSEDDVRKAYRRLALQMHPDRNLGNEEESRQVFMLVGEAYEVLSDPERRAVYDRFGREGLAAHDQGHRHPASAPPSPAAPAG----DAFHAGGDGSFSYHDDADFGFRHAQSIFDAFFAQESDWNFGXXXXXXXXXXXXXXXXXXFFGHGV------FNHPFFHGGGSGMYQQQG-GFDPF 238
            S  E+L  Y+ILG+  T S DD+++AYRRLALQMHPDRN GNEEE+RQ F+L+GEAYEVLSDPERR VYDRFGR+GLAAHDQG     S+P  P    G    D F + G     +H DA FGF HAQ IFDAFF++E                        F G G+      F+ PFF   G  M QQQG GF PF
Sbjct:    5 SGGEELCFYEILGVPPTSSTDDIKQAYRRLALQMHPDRNRGNEEEARQTFVLIGEAYEVLSDPERRDVYDRFGRQGLAAHDQGRNPADSSPRGPGGSRGSGVEDFFSSAG---HHFHRDATFGFPHAQEIFDAFFSEE----------RVGSGNGRGNFPFGFGGEGLAPRTSFFSPPFF---GGAMQQQQGFGFRPF 186          
BLAST of NO28G00750 vs. NCBI_GenBank
Match: XP_005855567.1 (hypothetical protein NGA_2108900 [Nannochloropsis gaditana CCMP526] >EKU20794.1 hypothetical protein NGA_2108900 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 159.8 bits (403), Expect = 1.600e-35
Identity = 101/198 (51.01%), Postives = 118/198 (59.60%), Query Frame = 0
Query:   51 SDDEDLSLYDILGLTRTCSEDDVRKAYRRLALQMHPDRNLGNEEESRQVFMLVGEAYEVLSDPERRAVYDRFGREGLAAHDQGHRHPASAPPSPAAPAG----DAFHAGGDGSFSYHDDADFGFRHAQSIFDAFFAQESDWNFGXXXXXXXXXXXXXXXXXXFFGHGV------FNHPFFHGGGSGMYQQQG-GFDPF 238
            S  E+L  Y+ILG+    S DD+++AYRRLALQMHPDRN GNEEE+RQ F+L+GEAYEVLSDPERR VYDRFGR+GLAAHDQG     S+P  P    G    D F + G     +H DA FGF HAQ IFDAFF++E                        F G G+      F+ PFF   G  M QQQG GF PF
Sbjct:    5 SGGEELCFYEILGVPPASSTDDIKQAYRRLALQMHPDRNRGNEEEARQTFVLIGEAYEVLSDPERRDVYDRFGRQGLAAHDQGRNPADSSPRGPGGSRGSGVEDFFSSAG---HHFHRDATFGFPHAQEIFDAFFSEE----------RVGSGNGRGNFPFGFGGEGLAPRTSFFSPPFF---GGAMQQQQGFGFRPF 186          
BLAST of NO28G00750 vs. NCBI_GenBank
Match: GAA31821.1 (DnaJ homolog subfamily B member 6 [Clonorchis sinensis])

HSP 1 Score: 100.1 bits (248), Expect = 1.500e-17
Identity = 57/132 (43.18%), Postives = 80/132 (60.61%), Query Frame = 0
Query:   59 YDILGLTRTCSEDDVRKAYRRLALQMHPDRNLGNEEESRQVFMLVGEAYEVLSDPERRAVYDRFGREGL---AAHDQGHRHPASAPPSPAAPAGDAFHAG----GDGSFSYHDDADFGFRHAQSIFDAFFAQ 184
            Y ILGL R  +E+D+R+AYR+LAL+ HPD+NLG+  E+ + F  +  AYEVLSD E+RA+YDR+G+EGL     H + H   A         +G   H+G    GD  F +H +  F FR  + +F  FFA+
Sbjct:    8 YKILGLERNATEEDIRRAYRQLALKWHPDKNLGDSGEAEKRFKEISAAYEVLSDAEKRAIYDRYGKEGLKGTRVHPRSHSRGAQLRRRRTMGSGSGLHSGLFDDGDFFFPFH-EFGFAFRDPEVVFREFFAK 138          
BLAST of NO28G00750 vs. NCBI_GenBank
Match: XP_009173857.1 (hypothetical protein T265_09505 [Opisthorchis viverrini] >KER22387.1 hypothetical protein T265_09505 [Opisthorchis viverrini])

HSP 1 Score: 97.8 bits (242), Expect = 7.500e-17
Identity = 57/132 (43.18%), Postives = 79/132 (59.85%), Query Frame = 0
Query:   59 YDILGLTRTCSEDDVRKAYRRLALQMHPDRNLGNEEESRQVFMLVGEAYEVLSDPERRAVYDRFGREGLAA---HDQGHRHPASAPPSPAAPAGDAFHAG----GDGSFSYHDDADFGFRHAQSIFDAFFAQ 184
            Y ILGL R  +E+D+R+AYR+LAL+ HPD+NLG+  E+ + F  +  AYEVLSD E+RA+YDR+GREGL     H +     A         +G   H+G    GD  F +H +  F FR  + +F  FFA+
Sbjct:    8 YKILGLERNATEEDIRRAYRQLALKWHPDKNLGDSGEAEKRFKEISAAYEVLSDAEKRAIYDRYGREGLKGTRMHPRSQSRGAQIRRRRTMGSGTGLHSGLFDDGDFFFPFH-EFGFAFRDPEVVFREFFAK 138          
BLAST of NO28G00750 vs. NCBI_GenBank
Match: OON21959.1 (DnaJ domain protein, partial [Opisthorchis viverrini])

HSP 1 Score: 97.8 bits (242), Expect = 7.500e-17
Identity = 57/132 (43.18%), Postives = 79/132 (59.85%), Query Frame = 0
Query:   59 YDILGLTRTCSEDDVRKAYRRLALQMHPDRNLGNEEESRQVFMLVGEAYEVLSDPERRAVYDRFGREGLAA---HDQGHRHPASAPPSPAAPAGDAFHAG----GDGSFSYHDDADFGFRHAQSIFDAFFAQ 184
            Y ILGL R  +E+D+R+AYR+LAL+ HPD+NLG+  E+ + F  +  AYEVLSD E+RA+YDR+GREGL     H +     A         +G   H+G    GD  F +H +  F FR  + +F  FFA+
Sbjct:    8 YKILGLERNATEEDIRRAYRQLALKWHPDKNLGDSGEAEKRFKEISAAYEVLSDAEKRAIYDRYGREGLKGTRMHPRSQSRGAQIRRRRTMGSGTGLHSGLFDDGDFFFPFH-EFGFAFRDPEVVFREFFAK 138          
BLAST of NO28G00750 vs. NCBI_GenBank
Match: OWM91080.1 (hypothetical protein CDL15_Pgr023413 [Punica granatum])

HSP 1 Score: 97.8 bits (242), Expect = 7.500e-17
Identity = 53/127 (41.73%), Postives = 74/127 (58.27%), Query Frame = 0
Query:   59 YDILGLTRTCSEDDVRKAYRRLALQMHPDRNLGNEEESRQVFMLVGEAYEVLSDPERRAVYDRFGREGLAAHDQGHRHPASAPPSPAAPAGDAFHAGGDGSFSYHDDADFGFRHAQSIFDAFFAQES 186
            Y ILG+ R+  +DD++KAYR+LA++ HPD+N  N++E+   F  + EAY+VLSDP++RAVYD++G +GL             PP    P G  F + GDG  S+     F  R A  IF  FF   S
Sbjct:    6 YKILGVDRSAKDDDLKKAYRKLAMKWHPDKNPNNKKEAEAKFKQISEAYDVLSDPQKRAVYDQYGEDGLKGQ--------MPPPDAGGPGGTTFFSTGDGPTSFR----FNPRSADDIFAEFFGFSS 120          
BLAST of NO28G00750 vs. NCBI_GenBank
Match: PKI51347.1 (hypothetical protein CRG98_028294, partial [Punica granatum])

HSP 1 Score: 97.8 bits (242), Expect = 7.500e-17
Identity = 53/127 (41.73%), Postives = 74/127 (58.27%), Query Frame = 0
Query:   59 YDILGLTRTCSEDDVRKAYRRLALQMHPDRNLGNEEESRQVFMLVGEAYEVLSDPERRAVYDRFGREGLAAHDQGHRHPASAPPSPAAPAGDAFHAGGDGSFSYHDDADFGFRHAQSIFDAFFAQES 186
            Y ILG+ R+  +DD++KAYR+LA++ HPD+N  N++E+   F  + EAY+VLSDP++RAVYD++G +GL             PP    P G  F + GDG  S+     F  R A  IF  FF   S
Sbjct:    6 YKILGVDRSAKDDDLKKAYRKLAMKWHPDKNPNNKKEAEAKFKQISEAYDVLSDPQKRAVYDQYGEDGLKGQ--------MPPPDAGGPGGTTFFSTGDGPTSFR----FNPRSADDIFAEFFGFSS 120          
BLAST of NO28G00750 vs. NCBI_GenBank
Match: XP_015637533.1 (PREDICTED: dnaJ homolog subfamily B member 4 [Oryza sativa Japonica Group] >AAU10651.1 putative heat shock protein, hsp40 [Oryza sativa Japonica Group] >BAF18234.1 Os05g0562300 [Oryza sativa Japonica Group] >BAG90409.1 unnamed protein product [Oryza sativa Japonica Group] >EEE64688.1 hypothetical protein OsJ_19543 [Oryza sativa Japonica Group] >BAS95332.1 Os05g0562300 [Oryza sativa Japonica Group])

HSP 1 Score: 97.1 bits (240), Expect = 1.300e-16
Identity = 56/134 (41.79%), Postives = 77/134 (57.46%), Query Frame = 0
Query:   56 LSLYDILGLTRTCSEDDVRKAYRRLALQMHPDRNLGNEEESRQVFMLVGEAYEVLSDPERRAVYDRFGREGLAAHDQGHRHPASAPPSPAAPAGDA----FHAGGDGSFSYHDDADFGFRHAQSIFDAFFAQES 186
            +  Y ILG+ +  S+DD++KAYR+LA++ HPD+N  N++E+   F  + EAYEVLSDP++RAVYD++G EGL             PP  A  AG      F  GGDG   +     F  R+A+ IF  FF   S
Sbjct:    3 MDYYKILGVDKAASDDDLKKAYRKLAMKWHPDKNPNNKKEAENKFKQISEAYEVLSDPQKRAVYDQYGEEGL---------KGQVPPPGAGGAGPGGATFFSTGGDGPNVFR----FNPRNAEDIFAEFFGSSS 123          
BLAST of NO28G00750 vs. NCBI_GenBank
Match: XP_003567904.1 (dnaJ homolog subfamily B member 4 [Brachypodium distachyon] >KQK04897.1 hypothetical protein BRADI_2g16660v3 [Brachypodium distachyon])

HSP 1 Score: 97.1 bits (240), Expect = 1.300e-16
Identity = 55/134 (41.04%), Postives = 77/134 (57.46%), Query Frame = 0
Query:   56 LSLYDILGLTRTCSEDDVRKAYRRLALQMHPDRNLGNEEESRQVFMLVGEAYEVLSDPERRAVYDRFGREGLAAHDQGHRHPASAPPSPAAPAGDA----FHAGGDGSFSYHDDADFGFRHAQSIFDAFFAQES 186
            +  Y ILG+ +   +DD++KAYR+LA++ HPD+N  N++E+   F  + EAYEVLSDP++RAVYD++G EGL             PP  A  AG      F  GGDG  ++     F  R+A+ IF  FF   S
Sbjct:    3 MDYYKILGVEKAAGDDDLKKAYRKLAMKWHPDKNPNNKKEAENKFKQISEAYEVLSDPQKRAVYDQYGEEGL---------KGQVPPPGAGGAGPGGATFFSTGGDGPTTFR----FNPRNAEDIFAEFFGSSS 123          
BLAST of NO28G00750 vs. NCBI_GenBank
Match: CDO62894.1 (heat shock protein 40, type II [Plasmodium reichenowi])

HSP 1 Score: 96.7 bits (239), Expect = 1.700e-16
Identity = 51/132 (38.64%), Postives = 83/132 (62.88%), Query Frame = 0
Query:    1 MMILHQILGVLIGSS---RVEDGGQSRHKGCKTAEFSQGATARQLVLMSSHRASDDEDLSLYDILGLTRTCSEDDVRKAYRRLALQMHPDRNLGNEE--ESRQVFMLVGEAYEVLSDPERRAVYDRFGREGL 128
            +++ + +  VLIGS+     +  G    K  K  +F+   +  +    SS  +S  ++   Y +LGLT+ C++DD++KAYR+LA++ HPD++L +E+  E+ + F L+GEAYEVLSD E+R  YD FG+ GL
Sbjct:   21 IVLFYTLEYVLIGSNYDKHNQSFGNEIFKNTKVFDFTSLRSLAEFNSGSSRESSKTDETDYYSVLGLTKDCTQDDIKKAYRKLAMKWHPDKHLNDEDKVEAERKFKLIGEAYEVLSDEEKRKNYDLFGQSGL 152          
The following BLAST results are available for this feature:
BLAST of NO28G00750 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM20936.14.200e-3651.52Heat shock protein DnaJ [Nannochloropsis gaditana][more]
XP_005855567.11.600e-3551.01hypothetical protein NGA_2108900 [Nannochloropsis ... [more]
GAA31821.11.500e-1743.18DnaJ homolog subfamily B member 6 [Clonorchis sine... [more]
XP_009173857.17.500e-1743.18hypothetical protein T265_09505 [Opisthorchis vive... [more]
OON21959.17.500e-1743.18DnaJ domain protein, partial [Opisthorchis viverri... [more]
OWM91080.17.500e-1741.73hypothetical protein CDL15_Pgr023413 [Punica grana... [more]
PKI51347.17.500e-1741.73hypothetical protein CRG98_028294, partial [Punica... [more]
XP_015637533.11.300e-1641.79PREDICTED: dnaJ homolog subfamily B member 4 [Oryz... [more]
XP_003567904.11.300e-1641.04dnaJ homolog subfamily B member 4 [Brachypodium di... [more]
CDO62894.11.700e-1638.64heat shock protein 40, type II [Plasmodium reichen... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL059nonsL059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR054ncniR054Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR094ngnoR094Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004872NSK004872Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO28G00750.1NO28G00750.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606768gene_9178Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100061g17gene9493Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO28G00750.1NO28G00750.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO28G00750 ID=NO28G00750|Name=NO28G00750|organism=Nannochloropsis oceanica|type=gene|length=1448bp
ATGATGATTCTTCACCAGATCCTTGGGGTTTTGATTGGGTCAAGCCGAGT
GGAGGACGGTGGACAGAGCCGACgtgctgcctcgcctcgctccagcctac
accagtgacctgctgttgggcgattggaggctgtgatgggtgacacatta
atttcactgatgtcttgtggacataccgtccgacacggcgagtgagcgag
agcgacgagtcttcaagtcttagaaattgttccctggccttcgcatcaca
cacactcacacttctcaacgtacgtacaacccacgcgcatagATAAAGGC
TGCAAAACAGCAGAGTTTTCGCAAGGCGCCACGGgtaaggtcgcaagcca
tcctctcatccccccgtcgtcgtttttttctctatcatcccgcgtaaccg
aactcagaggttctacgcacccttttcagCACGCCAACTGGTCCTCATGA
GTAGCCACAGGGCATCCGACGACGAGGACTTGTCCTTGTACGACATTTTG
GGATTGACCCGCACGTGCTCCGAAGATGACGTGAGGAAAGCTTATCGACG
CCTGGCCCTCCAGATGCACCCAGATCGAAATCTTGGCAACGAAGAAGAGT
CCCGACAAGTGTTTATGCTCGTTGGTGAGGCATATGAGGTGTTGAGTGAT
CCTGAACGACGTGCTGTCTACGACCGCTTCGGACGGGAGGGGCTGGCGGC
CCACGACCAAGGGCATCGGCACCCTGCTTCTGCACCTCCCTCTCCCGCGG
CTCCTGCAGGTGATGCATTTCATGCAGGCGGCGATGGTAGCTTTTCTTAT
CATGACGATGCTGATTTCGGGTTTAGGCATGCGCAAAGCATTTTTGACGC
CTTCTTCGCGCAGGAGAGTGACTGGAATTTCGGAGGATTCGGTGGTGCCA
GAGGACGGGGAGGAGGAGGAGGAGGAGTAGCAGGGGCGTTTTTTGGTCAT
GGTGTTTTCAATCATCCTTTTTTCCATGGTGGTGGTAGTGGAATGTATCA
GCAGCAGGGAGGATTTGATCCGTTTGGGCCTTTTGCAGGCATGCCGGGAA
TGGGTGGAAGGGGGGGCGGGTACCAGCAGCAATTTCAGAGCAGTAGCAGT
GGTGGTGGTGTTTATCTCACTACAAACAGCAATGGCGGGGGGACAAGCAG
TAGTAGCAGTACTTATGCTGTTGGTGGTGGAGGGGGAGGAGTGGTGTCTT
CTTCGAGCAGCATGAGTAGTGGTGGGATGGGAGGGGGGGTGCGGCGGTCG
GTCAGGACGGCGACCACAGTGGGGGCAGGTGGTAGGAGCCGAACGAGGAC
GGAAACGACGACGACGTACCCAGACGGACGGAGTGAGACAACGGTGGAAG
AGTGGGAGGAGGACGTGCCACGGGCAGAAGGAGAAGGGCATTACATGCAG
CAGGTGCAGCACCAGCGAGGCACGAGGACGCAAGGGTGGACGCGGTAG
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protein sequence of NO28G00750.1

>NO28G00750.1-protein ID=NO28G00750.1-protein|Name=NO28G00750.1|organism=Nannochloropsis oceanica|type=polypeptide|length=378bp
MMILHQILGVLIGSSRVEDGGQSRHKGCKTAEFSQGATARQLVLMSSHRA
SDDEDLSLYDILGLTRTCSEDDVRKAYRRLALQMHPDRNLGNEEESRQVF
MLVGEAYEVLSDPERRAVYDRFGREGLAAHDQGHRHPASAPPSPAAPAGD
AFHAGGDGSFSYHDDADFGFRHAQSIFDAFFAQESDWNFGGFGGARGRGG
GGGGVAGAFFGHGVFNHPFFHGGGSGMYQQQGGFDPFGPFAGMPGMGGRG
GGYQQQFQSSSSGGGVYLTTNSNGGGTSSSSSTYAVGGGGGGVVSSSSSM
SSGGMGGGVRRSVRTATTVGAGGRSRTRTETTTTYPDGRSETTVEEWEED
VPRAEGEGHYMQQVQHQRGTRTQGWTR*
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Synonyms
Publications