NO28G00670, NO28G00670 (gene) Nannochloropsis oceanica

Overview
NameNO28G00670
Unique NameNO28G00670
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3428
Alignment locationchr28:230685..234112 +

Link to JBrowse

Properties
Property NameValue
Description26s proteasome regulatory atpase rpt4
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:230685..234112 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0036402proteasome-activating ATPase activity
GO:0005524ATP binding
GO:0016787hydrolase activity
GO:0000166nucleotide binding
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR035263PSMC6
IPR003959ATPase_AAA_core
IPR003593AAA+_ATPase
Vocabulary: Biological Process
TermDefinition
GO:0019538protein metabolic process
GO:0009987cellular process
GO:0009056catabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Homology
[Close]
BLAST of NO28G00670 vs. NCBI_GenBank
Match: EWM20917.1 (26s proteasome regulatory atpase rpt4 [Nannochloropsis gaditana])

HSP 1 Score: 734.6 bits (1895), Expect = 1.700e-208
Identity = 370/389 (95.12%), Postives = 381/389 (97.94%), Query Frame = 0 
Query:   11 MDVDRAQLLDQYRAKIREHHEVELRVKQLREHVRGLGKEYNKTEDDLKALQSVGQIIGEVLKQLDDERFIVKASSGPRYVVGCRNKLDKAKLKPGTRVSLDMTTLTIMRQLPREVDPNVYHMLHEDAGGISFSQIGGLNDQIRELREVIELPLTNPELFHRVGIKPPKGVLLYGPPGTGKTLLARALASNIQATFLKVLASAIVDKYIGESARVIREMFGYAREHQPCVIFMDEVDAIGGSRFSEGTSADREIQRTLMELLNQLDGFDGLGAVKMVMATNRPDILDPALLRPGRLDRKIEIPLPNETGRLDVLKIHAAPITKRGEIDYESIVKLTDGFNCADIRNVCTEAGLFAIRAGRDYVLEEDFMKASRKLMDAKKLEGKLEYSKV 400
            MDVDR+QLL+QYRAK+REH EVELRVKQLRE VRGL KEY+KTEDDLKALQSVGQIIG+VLKQLDDERFIVKASSGPRYVVGCRNKL+K KLK GTRVS+DMTTLTIMRQLPREVDPNVYHMLH+DAGGISFS IGGLNDQIRELREVIELPLTNPELF RVGIK PKGVLLYGPPGTGKTLLARALASNIQATFLKVLASAIVDKYIGESARVIREMFGYAREHQPCVIFMDEVDAIGGSRFSEGTSADREIQRTLMELLNQLDGFDGLGAVKMVMATNRPDILDPALLRPGRLDRKIEIPLPNETGRLDVLKIHAAPITKRG+ID+ESIVKLTDGFNCAD+RNVCTEAGLFAIRAGRDYVLEEDFMKASRKLMDAKKLEGKLEYSKV
Sbjct:    1 MDVDRSQLLEQYRAKLREHREVELRVKQLREQVRGLSKEYSKTEDDLKALQSVGQIIGDVLKQLDDERFIVKASSGPRYVVGCRNKLEKNKLKAGTRVSMDMTTLTIMRQLPREVDPNVYHMLHDDAGGISFSSIGGLNDQIRELREVIELPLTNPELFSRVGIKAPKGVLLYGPPGTGKTLLARALASNIQATFLKVLASAIVDKYIGESARVIREMFGYAREHQPCVIFMDEVDAIGGSRFSEGTSADREIQRTLMELLNQLDGFDGLGAVKMVMATNRPDILDPALLRPGRLDRKIEIPLPNETGRLDVLKIHAAPITKRGDIDFESIVKLTDGFNCADLRNVCTEAGLFAIRAGRDYVLEEDFMKASRKLMDAKKLEGKLEYSKV 389
[Close]
BLAST of NO28G00670 vs. NCBI_GenBank
Match: GAX97362.1 (26S protease regulatory subunit 10B [Pythium insidiosum])

HSP 1 Score: 664.8 bits (1714), Expect = 1.600e-187
Identity = 329/388 (84.79%), Postives = 360/388 (92.78%), Query Frame = 0 
Query:   11 MDVDRAQLLDQYRAKIREHHEVELRVKQLREHVRGLGKEYNKTEDDLKALQSVGQIIGEVLKQLDDERFIVKASSGPRYVVGCRNKLDKAKLKPGTRVSLDMTTLTIMRQLPREVDPNVYHMLHEDAGGISFSQIGGLNDQIRELREVIELPLTNPELFHRVGIKPPKGVLLYGPPGTGKTLLARALASNIQATFLKVLASAIVDKYIGESARVIREMFGYAREHQPCVIFMDEVDAIGGSRFSEGTSADREIQRTLMELLNQLDGFDGLGAVKMVMATNRPDILDPALLRPGRLDRKIEIPLPNETGRLDVLKIHAAPITKRGEIDYESIVKLTDGFNCADIRNVCTEAGLFAIRAGRDYVLEEDFMKASRKLMDAKKLEGKLEYSK 399
            MD +R Q+L+ Y+AK+REH E++ RVK LRE+V+ L KEYNKTEDDLKALQSVGQIIGEVL+QLDD+RFIVKASSGPRYVVGCR K+DKAKLK GTRV+LDMTTLTIMR LPREVDP VYHML+EDAG +SFS IGGLN+QIRELREVIELPLTNPELF RVGIKPPKGVLLYGPPGTGKTLLARALA NI ATFLKV+ASAIVDKYIGESARVIREMFGYAR+HQPCVIFMDE+DAIGGSRFSEGTSADREIQRTLMELLNQLDGFD LG VKMVMATNRPDILDPAL RPGRLDRKIEIPLPNE  R+D+LKIH+ PITK+G+IDYESIVKLTDGFN ADIRNVCTEAG+FAIRA R+YV+EEDFMKA+RKL + KKLE K++YSK
Sbjct:    1 MDEERIQVLNAYKAKVREHREIDSRVKSLRENVKNLVKEYNKTEDDLKALQSVGQIIGEVLRQLDDDRFIVKASSGPRYVVGCRTKVDKAKLKSGTRVALDMTTLTIMRALPREVDPTVYHMLNEDAGNVSFSSIGGLNEQIRELREVIELPLTNPELFVRVGIKPPKGVLLYGPPGTGKTLLARALACNINATFLKVVASAIVDKYIGESARVIREMFGYARDHQPCVIFMDEIDAIGGSRFSEGTSADREIQRTLMELLNQLDGFDALGQVKMVMATNRPDILDPALXRPGRLDRKIEIPLPNEASRMDILKIHSGPITKKGDIDYESIVKLTDGFNGADIRNVCTEAGVFAIRADREYVIEEDFMKAARKLAEVKKLESKMDYSK 388
[Close]
BLAST of NO28G00670 vs. NCBI_GenBank
Match: XP_002908853.1 (26S protease regulatory subunit S10B [Phytophthora infestans T30-4] >EEY57667.1 26S protease regulatory subunit S10B [Phytophthora infestans T30-4])

HSP 1 Score: 661.0 bits (1704), Expect = 2.400e-186
Identity = 325/386 (84.20%), Postives = 360/386 (93.26%), Query Frame = 0 
Query:   14 DRAQLLDQYRAKIREHHEVELRVKQLREHVRGLGKEYNKTEDDLKALQSVGQIIGEVLKQLDDERFIVKASSGPRYVVGCRNKLDKAKLKPGTRVSLDMTTLTIMRQLPREVDPNVYHMLHEDAGGISFSQIGGLNDQIRELREVIELPLTNPELFHRVGIKPPKGVLLYGPPGTGKTLLARALASNIQATFLKVLASAIVDKYIGESARVIREMFGYAREHQPCVIFMDEVDAIGGSRFSEGTSADREIQRTLMELLNQLDGFDGLGAVKMVMATNRPDILDPALLRPGRLDRKIEIPLPNETGRLDVLKIHAAPITKRGEIDYESIVKLTDGFNCADIRNVCTEAGLFAIRAGRDYVLEEDFMKASRKLMDAKKLEGKLEYSKV 400
            +R Q+L+ Y+AK+ EH E+E RVK +RE+V+ L KE+NKTEDDLKALQSVGQIIGEVL+QLD++RFIVKASSGPRYVVGCR K+DK+KLK GTRV+LDMTTLTIMR LPREVDP VYHML+EDAG +SFS IGGLN+QIRELREVIELPLTNPELFHRVGIKPPKGVLLYGPPGTGKTLLARALA NI ATFLKV+ASAIVDKYIGESARVIREMFGYAR+HQPCVIFMDE+DAIGGSR+SEGTSADREIQRTLMELLNQLDGFD LG VKMVMATNRPDILDPALLRPGRLDRKIEIPLPNE  R+D+LKIH+ PITK+GEIDYESIVKLTDGFN AD+RNVCTEAG+FAIRA R+YV+EEDFMKA+RKL + KKLE K++YSKV
Sbjct:    9 ERTQVLNAYKAKVMEHREMESRVKNMRENVKALVKEFNKTEDDLKALQSVGQIIGEVLRQLDEDRFIVKASSGPRYVVGCRAKVDKSKLKSGTRVALDMTTLTIMRYLPREVDPTVYHMLNEDAGNVSFSSIGGLNEQIRELREVIELPLTNPELFHRVGIKPPKGVLLYGPPGTGKTLLARALACNINATFLKVVASAIVDKYIGESARVIREMFGYARDHQPCVIFMDEIDAIGGSRYSEGTSADREIQRTLMELLNQLDGFDALGQVKMVMATNRPDILDPALLRPGRLDRKIEIPLPNEASRMDILKIHSGPITKKGEIDYESIVKLTDGFNGADMRNVCTEAGMFAIRADREYVVEEDFMKAARKLAETKKLESKMDYSKV 394
[Close]
BLAST of NO28G00670 vs. NCBI_GenBank
Match: CBJ28298.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 658.7 bits (1698), Expect = 1.200e-185
Identity = 329/391 (84.14%), Postives = 360/391 (92.07%), Query Frame = 0 
Query:    9 ESMDVDRAQLLDQYRAKIREHHEVELRVKQLREHVRGLGKEYNKTEDDLKALQSVGQIIGEVLKQLDDERFIVKASSGPRYVVGCRNKLDKAKLKPGTRVSLDMTTLTIMRQLPREVDPNVYHMLHEDAGGISFSQIGGLNDQIRELREVIELPLTNPELFHRVGIKPPKGVLLYGPPGTGKTLLARALASNIQATFLKVLASAIVDKYIGESARVIREMFGYAREHQPCVIFMDEVDAIGGSRFSEGTSADREIQRTLMELLNQLDGFDGLGAVKMVMATNRPDILDPALLRPGRLDRKIEIPLPNETGRLDVLKIHAAPITKRGEIDYESIVKLTDGFNCADIRNVCTEAGLFAIRAGRDYVLEEDFMKASRKLMDAKKLEGKLEYSKV 400
            E  + +R Q+L+QYR K+REH E+E RVK LR   R L KEYNKTEDDLKALQSVGQIIG+VLKQLDD+RFIVKASSGPRYVVGCR+KLDKA LKP TRVSLDMTTLTIMR+LPREVDP V+HML+ED GGISFS+IGGL +QIRELREVIELPLTNPELF RVGIKPPKGVLLYGPPGTGKTLLARALASNI ATFLKV+ASAIVDKYIGESARV+REMFGYA++HQPCVIFMDE+DAIGGSRFSEGTSADREIQRTLMELLNQLDGF+ LG VKMVMATNRPDILDPALLRPGRLDRKIEIPLPNET RLD++KIH+A ITKRGEID+ES+VKL DGFN AD+RNV TEAGLFAIRA RDYVLEEDFMKA RK+ + KKLEGK++Y+KV
Sbjct:    4 EGDEAERLQVLEQYRKKVREHREMETRVKTLRTETRDLVKEYNKTEDDLKALQSVGQIIGDVLKQLDDDRFIVKASSGPRYVVGCRSKLDKAALKPSTRVSLDMTTLTIMRKLPREVDPTVFHMLNEDPGGISFSEIGGLGEQIRELREVIELPLTNPELFIRVGIKPPKGVLLYGPPGTGKTLLARALASNINATFLKVVASAIVDKYIGESARVVREMFGYAKDHQPCVIFMDEIDAIGGSRFSEGTSADREIQRTLMELLNQLDGFEDLGQVKMVMATNRPDILDPALLRPGRLDRKIEIPLPNETSRLDIIKIHSASITKRGEIDFESVVKLADGFNGADLRNVGTEAGLFAIRADRDYVLEEDFMKAVRKIAENKKLEGKVDYAKV 394
[Close]
BLAST of NO28G00670 vs. NCBI_GenBank
Match: XP_024585790.1 (26s protease regulatory subunit 10b [Plasmopara halstedii] >CEG49421.1 26s protease regulatory subunit 10b [Plasmopara halstedii])

HSP 1 Score: 658.3 bits (1697), Expect = 1.500e-185
Identity = 326/386 (84.46%), Postives = 359/386 (93.01%), Query Frame = 0 
Query:   14 DRAQLLDQYRAKIREHHEVELRVKQLREHVRGLGKEYNKTEDDLKALQSVGQIIGEVLKQLDDERFIVKASSGPRYVVGCRNKLDKAKLKPGTRVSLDMTTLTIMRQLPREVDPNVYHMLHEDAGGISFSQIGGLNDQIRELREVIELPLTNPELFHRVGIKPPKGVLLYGPPGTGKTLLARALASNIQATFLKVLASAIVDKYIGESARVIREMFGYAREHQPCVIFMDEVDAIGGSRFSEGTSADREIQRTLMELLNQLDGFDGLGAVKMVMATNRPDILDPALLRPGRLDRKIEIPLPNETGRLDVLKIHAAPITKRGEIDYESIVKLTDGFNCADIRNVCTEAGLFAIRAGRDYVLEEDFMKASRKLMDAKKLEGKLEYSKV 400
            +R Q+L+ Y+AK+ EH E+E RVK +RE+V+ L +E+NKTEDDLKALQSVGQIIGEVL+QLDD+RFIVKASSGPRYVVGCR K+DK+KLK GTRV+LDMTTLTIMR LPREVDP VYHML+EDAG +SFS IGGLNDQIRELREVIELPLTNPELF RVGIKPPKGVLLYGPPGTGKTLLARALA NI ATFLKV+ASAIVDKYIGESARVIREMFGYAR+HQPCVIFMDE+DAIGGSR+SEGTSADREIQRTLMELLNQLDGFD LG VKMVMATNRPDILDPALLRPGRLDRKIEIPLPNE  R+D+LKIH+ PITK+GEIDYESIVKLTDGFN AD+RNVCTEAG+FAIRA RDYV+EEDFMKA+RKL + KKLE K++YSKV
Sbjct:    9 ERTQVLNAYKAKVMEHREMESRVKSMRENVKTLVQEFNKTEDDLKALQSVGQIIGEVLRQLDDDRFIVKASSGPRYVVGCRAKVDKSKLKSGTRVALDMTTLTIMRFLPREVDPTVYHMLNEDAGNVSFSSIGGLNDQIRELREVIELPLTNPELFFRVGIKPPKGVLLYGPPGTGKTLLARALACNINATFLKVVASAIVDKYIGESARVIREMFGYARDHQPCVIFMDEIDAIGGSRYSEGTSADREIQRTLMELLNQLDGFDALGQVKMVMATNRPDILDPALLRPGRLDRKIEIPLPNEASRMDILKIHSGPITKKGEIDYESIVKLTDGFNGADMRNVCTEAGMFAIRADRDYVVEEDFMKAARKLGETKKLESKMDYSKV 394
[Close]
BLAST of NO28G00670 vs. NCBI_GenBank
Match: OWZ23183.1 (26S protease regulatory protein [Phytophthora megakarya])

HSP 1 Score: 656.4 bits (1692), Expect = 5.800e-185
Identity = 324/386 (83.94%), Postives = 359/386 (93.01%), Query Frame = 0 
Query:   14 DRAQLLDQYRAKIREHHEVELRVKQLREHVRGLGKEYNKTEDDLKALQSVGQIIGEVLKQLDDERFIVKASSGPRYVVGCRNKLDKAKLKPGTRVSLDMTTLTIMRQLPREVDPNVYHMLHEDAGGISFSQIGGLNDQIRELREVIELPLTNPELFHRVGIKPPKGVLLYGPPGTGKTLLARALASNIQATFLKVLASAIVDKYIGESARVIREMFGYAREHQPCVIFMDEVDAIGGSRFSEGTSADREIQRTLMELLNQLDGFDGLGAVKMVMATNRPDILDPALLRPGRLDRKIEIPLPNETGRLDVLKIHAAPITKRGEIDYESIVKLTDGFNCADIRNVCTEAGLFAIRAGRDYVLEEDFMKASRKLMDAKKLEGKLEYSKV 400
            +R Q+L+ Y+AK+ EH E+E RVK +RE+V+ L KE+NKTEDDLKALQSVGQIIGEVL+QLD++RFIVKASSGPRYVVGCR K+DK+KLK GTRV+LDMTTLTIMR LPREVDP VYHML+EDAG +SFS IGGLN+QIRELREVIELPLTNPELF RVGIKPPKGVLLYGPPGTGKTLLARALA NI ATFLKV+ASAIVDKYIGESARVIREMFGYAR+HQPCVIFMDE+DAIGGSR+SEGTSADREIQRTLMELLNQLDGFD LG VKMVMATNRPDILDPALLRPGRLDRKIEIPLPNE  R+D+LKIH+ PITK+GEIDYESIVKLTDGFN AD+RNVCTEAG+FAIRA R+YV+EEDFMKA+RKL + KKLE K++YSKV
Sbjct:    9 ERTQVLNAYKAKVMEHREMESRVKNMRENVKTLVKEFNKTEDDLKALQSVGQIIGEVLRQLDEDRFIVKASSGPRYVVGCRAKVDKSKLKSGTRVALDMTTLTIMRYLPREVDPTVYHMLNEDAGNVSFSSIGGLNEQIRELREVIELPLTNPELFMRVGIKPPKGVLLYGPPGTGKTLLARALACNINATFLKVVASAIVDKYIGESARVIREMFGYARDHQPCVIFMDEIDAIGGSRYSEGTSADREIQRTLMELLNQLDGFDALGQVKMVMATNRPDILDPALLRPGRLDRKIEIPLPNEASRMDILKIHSGPITKKGEIDYESIVKLTDGFNGADMRNVCTEAGMFAIRADREYVVEEDFMKAARKLAETKKLESKMDYSKV 394
[Close]
BLAST of NO28G00670 vs. NCBI_GenBank
Match: XP_009529821.1 (hypothetical protein PHYSODRAFT_354854 [Phytophthora sojae] >EGZ16072.1 hypothetical protein PHYSODRAFT_354854 [Phytophthora sojae])

HSP 1 Score: 656.0 bits (1691), Expect = 7.600e-185
Identity = 324/386 (83.94%), Postives = 359/386 (93.01%), Query Frame = 0 
Query:   14 DRAQLLDQYRAKIREHHEVELRVKQLREHVRGLGKEYNKTEDDLKALQSVGQIIGEVLKQLDDERFIVKASSGPRYVVGCRNKLDKAKLKPGTRVSLDMTTLTIMRQLPREVDPNVYHMLHEDAGGISFSQIGGLNDQIRELREVIELPLTNPELFHRVGIKPPKGVLLYGPPGTGKTLLARALASNIQATFLKVLASAIVDKYIGESARVIREMFGYAREHQPCVIFMDEVDAIGGSRFSEGTSADREIQRTLMELLNQLDGFDGLGAVKMVMATNRPDILDPALLRPGRLDRKIEIPLPNETGRLDVLKIHAAPITKRGEIDYESIVKLTDGFNCADIRNVCTEAGLFAIRAGRDYVLEEDFMKASRKLMDAKKLEGKLEYSKV 400
            +R Q+L+ Y+AK+ EH E+E RVK +RE+V+ L KE+NKTEDDLKALQSVGQIIGEVL+QLD++RFIVKASSGPRYVVGCR K+DK+KLK GTRV+LDMTTLTIMR LPREVDP VYHML+EDAG +SFS IGGLN+QIRELREVIELPLTNPELF RVGIKPPKGVLLYGPPGTGKTLLARALA NI ATFLKV+ASAIVDKYIGESARVIREMFGYAR+HQPCVIFMDE+DAIGGSR+SEGTSADREIQRTLMELLNQLDGFD LG VKMVMATNRPDILDPALLRPGRLDRKIEIPLPNE  R+D+LKIH+ PITK+GEIDYESIVKLTDGFN AD+RNVCTEAG+FAIRA R+YV+EEDFMKA+RKL + KKLE K++YSKV
Sbjct:    9 ERTQVLNAYKAKVMEHREMESRVKNMRENVKTLVKEFNKTEDDLKALQSVGQIIGEVLRQLDEDRFIVKASSGPRYVVGCRAKVDKSKLKSGTRVALDMTTLTIMRYLPREVDPTVYHMLNEDAGNVSFSSIGGLNEQIRELREVIELPLTNPELFLRVGIKPPKGVLLYGPPGTGKTLLARALACNINATFLKVVASAIVDKYIGESARVIREMFGYARDHQPCVIFMDEIDAIGGSRYSEGTSADREIQRTLMELLNQLDGFDALGQVKMVMATNRPDILDPALLRPGRLDRKIEIPLPNEASRMDILKIHSGPITKKGEIDYESIVKLTDGFNGADMRNVCTEAGMFAIRADREYVVEEDFMKAARKLAETKKLESKMDYSKV 394
[Close]
BLAST of NO28G00670 vs. NCBI_GenBank
Match: XP_008904718.1 (26S protease regulatory subunit 10B [Phytophthora parasitica INRA-310] >ETI47896.1 26S protease regulatory subunit 10B [Phytophthora parasitica P1569] >ETK87816.1 26S protease regulatory subunit 10B [Phytophthora parasitica] >ETL41236.1 26S protease regulatory subunit 10B [Phytophthora parasitica] >ETL94399.1 26S protease regulatory subunit 10B [Phytophthora parasitica] >ETM47623.1 26S protease regulatory subunit 10B [Phytophthora parasitica] >ETN10281.1 26S protease regulatory subunit 10B [Phytophthora parasitica INRA-310] >ETO76604.1 26S protease regulatory subunit 10B [Phytophthora parasitica P1976] >ETP17657.1 26S protease regulatory subunit 10B [Phytophthora parasitica CJ01A1] >ETP45714.1 26S protease regulatory subunit 10B [Phytophthora parasitica P10297] >KUF81402.1 26S protease regulatory subunit 10B A [Phytophthora nicotianae] >KUF92423.1 Glyoxylate reductase/hydroxypyruvate reductase [Phytophthora nicotianae])

HSP 1 Score: 656.0 bits (1691), Expect = 7.600e-185
Identity = 324/386 (83.94%), Postives = 359/386 (93.01%), Query Frame = 0 
Query:   14 DRAQLLDQYRAKIREHHEVELRVKQLREHVRGLGKEYNKTEDDLKALQSVGQIIGEVLKQLDDERFIVKASSGPRYVVGCRNKLDKAKLKPGTRVSLDMTTLTIMRQLPREVDPNVYHMLHEDAGGISFSQIGGLNDQIRELREVIELPLTNPELFHRVGIKPPKGVLLYGPPGTGKTLLARALASNIQATFLKVLASAIVDKYIGESARVIREMFGYAREHQPCVIFMDEVDAIGGSRFSEGTSADREIQRTLMELLNQLDGFDGLGAVKMVMATNRPDILDPALLRPGRLDRKIEIPLPNETGRLDVLKIHAAPITKRGEIDYESIVKLTDGFNCADIRNVCTEAGLFAIRAGRDYVLEEDFMKASRKLMDAKKLEGKLEYSKV 400
            +R Q+L+ Y+AK+ EH E+E RVK +RE+V+ L KE+NKTEDDLKALQSVGQIIGEVL+QLD++RFIVKASSGPRYVVGCR K+DK+KLK GTRV+LDMTTLTIMR LPREVDP VYHML+EDAG +SFS IGGLN+QIRELREVIELPLTNPELF RVGIKPPKGVLLYGPPGTGKTLLARALA NI ATFLKV+ASAIVDKYIGESARVIREMFGYAR+HQPCVIFMDE+DAIGGSR+SEGTSADREIQRTLMELLNQLDGFD LG VKMVMATNRPDILDPALLRPGRLDRKIEIPLPNE  R+D+LKIH+ PITK+GEIDYESIVKLTDGFN AD+RNVCTEAG+FAIRA R+YV+EEDFMKA+RKL + KKLE K++YSKV
Sbjct:    9 ERTQVLNAYKAKVMEHREMESRVKNMRENVKTLVKEFNKTEDDLKALQSVGQIIGEVLRQLDEDRFIVKASSGPRYVVGCRAKVDKSKLKSGTRVALDMTTLTIMRYLPREVDPTVYHMLNEDAGNVSFSSIGGLNEQIRELREVIELPLTNPELFLRVGIKPPKGVLLYGPPGTGKTLLARALACNINATFLKVVASAIVDKYIGESARVIREMFGYARDHQPCVIFMDEIDAIGGSRYSEGTSADREIQRTLMELLNQLDGFDALGQVKMVMATNRPDILDPALLRPGRLDRKIEIPLPNEASRMDILKIHSGPITKKGEIDYESIVKLTDGFNGADMRNVCTEAGMFAIRADREYVVEEDFMKAARKLAETKKLESKMDYSKV 394
[Close]
BLAST of NO28G00670 vs. NCBI_GenBank
Match: OQR89043.1 (26S protease regulatory subunit S10B, partial [Thraustotheca clavata])

HSP 1 Score: 655.6 bits (1690), Expect = 9.900e-185
Identity = 324/388 (83.51%), Postives = 356/388 (91.75%), Query Frame = 0 
Query:   12 DVDRAQLLDQYRAKIREHHEVELRVKQLREHVRGLGKEYNKTEDDLKALQSVGQIIGEVLKQLDDERFIVKASSGPRYVVGCRNKLDKAKLKPGTRVSLDMTTLTIMRQLPREVDPNVYHMLHEDAGGISFSQIGGLNDQIRELREVIELPLTNPELFHRVGIKPPKGVLLYGPPGTGKTLLARALASNIQATFLKVLASAIVDKYIGESARVIREMFGYAREHQPCVIFMDEVDAIGGSRFSEGTSADREIQRTLMELLNQLDGFDGLGAVKMVMATNRPDILDPALLRPGRLDRKIEIPLPNETGRLDVLKIHAAPITKRGEIDYESIVKLTDGFNCADIRNVCTEAGLFAIRAGRDYVLEEDFMKASRKLMDAKKLEGKLEYSKV 400
            + +RA +L  YRAK+ EH EVE RVK +R++V+ L KEY+KTEDDLKALQSVG IIGEVL+QLD++RFIVKASSGPRYVVGCR K+DK KLK GTRV+LDMTTLTIMR LPREVDP VYHML+EDAG +SFS IGGLN+QIRELREV+ELPLTNPELF RVGIKPPKGVLLYGPPGTGKTLLARALA NI ATFLKV+ASAIVDKYIGESARVIREMFGYAR+HQPCVIFMDE+DAIGGSRFSEGTSADREIQRTLMELLNQLDGFD LG VKMVMATNRPDILDPALLRPGRLDRKIEIPLPNE  R+D+LKIH+ PITK+G+IDYESIVKLTDGFN ADIRNVCTEAG+FAIR  RDYV+EEDFMKA+RKL + KKLE K++YSKV
Sbjct:   16 EAERAAVLQAYRAKVVEHREVEARVKSMRDNVKALVKEYHKTEDDLKALQSVGMIIGEVLRQLDEDRFIVKASSGPRYVVGCRTKVDKTKLKSGTRVALDMTTLTIMRYLPREVDPTVYHMLNEDAGNVSFSSIGGLNEQIRELREVVELPLTNPELFLRVGIKPPKGVLLYGPPGTGKTLLARALACNINATFLKVVASAIVDKYIGESARVIREMFGYARDHQPCVIFMDEIDAIGGSRFSEGTSADREIQRTLMELLNQLDGFDSLGQVKMVMATNRPDILDPALLRPGRLDRKIEIPLPNEASRMDILKIHSGPITKKGDIDYESIVKLTDGFNGADIRNVCTEAGVFAIRGDRDYVVEEDFMKAARKLAETKKLESKMDYSKV 403
[Close]
BLAST of NO28G00670 vs. NCBI_GenBank
Match: XP_008864545.1 (26S protease regulatory subunit 10B [Aphanomyces invadans] >ETW06470.1 26S protease regulatory subunit 10B [Aphanomyces invadans])

HSP 1 Score: 652.9 bits (1683), Expect = 6.400e-184
Identity = 325/388 (83.76%), Postives = 356/388 (91.75%), Query Frame = 0 
Query:   12 DVDRAQLLDQYRAKIREHHEVELRVKQLREHVRGLGKEYNKTEDDLKALQSVGQIIGEVLKQLDDERFIVKASSGPRYVVGCRNKLDKAKLKPGTRVSLDMTTLTIMRQLPREVDPNVYHMLHEDAGGISFSQIGGLNDQIRELREVIELPLTNPELFHRVGIKPPKGVLLYGPPGTGKTLLARALASNIQATFLKVLASAIVDKYIGESARVIREMFGYAREHQPCVIFMDEVDAIGGSRFSEGTSADREIQRTLMELLNQLDGFDGLGAVKMVMATNRPDILDPALLRPGRLDRKIEIPLPNETGRLDVLKIHAAPITKRGEIDYESIVKLTDGFNCADIRNVCTEAGLFAIRAGRDYVLEEDFMKASRKLMDAKKLEGKLEYSKV 400
            + +RA +L  YR+K+ EH EVE RVK +RE+V+ L KEY+KTEDDLKALQSVG IIGEVL+QLD++RFIVKASSGPRYVVGCR K++K KLK GTRV+LDMTTLTIMR LPREVDP VYHML+EDAG +SFS IGGLN+QIRELREVIELPLTNPELF RVGIKPPKGVLLYGPPGTGKTLLARALA NI ATFLKV+ASAIVDKYIGESARVIREMFGYAR+HQPCVIFMDE+DAIGGSRFSEGTSADREIQRTLMELLNQLDGFD LG VKMVMATNRPDILDPALLRPGRLDRKIEIPLPNE  R+D+LKIH  PITK+G+IDYESIVKLTDGFN ADIRNVCTEAG+FAIRA RDYV+EEDFMKA+RKL + KKLE K++YSKV
Sbjct:    8 NAERAAVLQAYRSKVLEHREVEGRVKSMRENVKTLVKEYHKTEDDLKALQSVGMIIGEVLRQLDEDRFIVKASSGPRYVVGCRTKVEKDKLKSGTRVALDMTTLTIMRYLPREVDPTVYHMLNEDAGNVSFSHIGGLNEQIRELREVIELPLTNPELFLRVGIKPPKGVLLYGPPGTGKTLLARALACNINATFLKVVASAIVDKYIGESARVIREMFGYARDHQPCVIFMDEIDAIGGSRFSEGTSADREIQRTLMELLNQLDGFDSLGQVKMVMATNRPDILDPALLRPGRLDRKIEIPLPNEASRMDILKIHTGPITKKGDIDYESIVKLTDGFNGADIRNVCTEAGVFAIRADRDYVVEEDFMKAARKLAETKKLESKMDYSKV 395
The following BLAST results are available for this feature:
BLAST of NO28G00670 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM20917.11.700e-20895.1226s proteasome regulatory atpase rpt4 [Nannochloro... [more]
GAX97362.11.600e-18784.7926S protease regulatory subunit 10B [Pythium insid... [more]
XP_002908853.12.400e-18684.2026S protease regulatory subunit S10B [Phytophthora... [more]
CBJ28298.11.200e-18584.14conserved unknown protein [Ectocarpus siliculosus][more]
XP_024585790.11.500e-18584.4626s protease regulatory subunit 10b [Plasmopara ha... [more]
OWZ23183.15.800e-18583.9426S protease regulatory protein [Phytophthora mega... [more]
XP_009529821.17.600e-18583.94hypothetical protein PHYSODRAFT_354854 [Phytophtho... [more]
XP_008904718.17.600e-18583.9426S protease regulatory subunit 10B [Phytophthora ... [more]
OQR89043.19.900e-18583.5126S protease regulatory subunit S10B, partial [Thr... [more]
XP_008864545.16.400e-18483.7626S protease regulatory subunit 10B [Aphanomyces i... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL059nonsL059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR054ncniR054Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR094ngnoR094Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004864NSK004864Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO28G00670.1NO28G00670.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606743gene_9169Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100061g24gene9486Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO28G00670.1NO28G00670.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO28G00670 ID=NO28G00670|Name=NO28G00670|organism=Nannochloropsis oceanica|type=gene|length=3428bp
CAAAAACTGCACATTTGGGGCAAGGGGAGATGATGGCCTGAGCACCTCCC
TGAGAAGTCCTGCCATCTACTGCTGCGTTCTAACTGTATCTGAACACCAA
CTTAGTCTTCAGGCTGACTTTTATCCCGTACAACCTGATGCTGAGCCGAG
AGGTCCGGGGACACATCTGATGCTCGACCTGCCCCTTGCTTGCTGCGTCT
GTGCTGTCTGAGGTTTGGCACCACCCCTTGGCCATGCCCTGTAGTGCACG
ATCCTGTAGCATCTTCATAGACCTGCGATGGCTCCAATGACCGTTGCAGT
Ggtatggctagtcactagaaagcctcccctctttgcctcggcaagcaggc
agacttcgaagtgttcgtcaatttcctcagcgatagggtcctcccccaag
tctcttttctcacccatccaacaccacacattcacagGAAAGCATGGACG
TGGACCGGGCCCAACTATTAGACCAATACCGGGCAAAGATCCGAGAGCAT
CACGAAGTGGAACTTCGgtacgtttggagagaaggcaggggggagggagg
gaggcggaggcgaggcgaagagagtatgggcggtggaaggaccgacaagg
cgtgcattacaatgcgctggacagcacaattgagggcgagaagagaaagg
cccgacggcggggtgtcggttaattcaaatgaaaggcttactgatgcctg
gcgcggcggaagacagaacgggcaggagcatgcaatcatagcacgtacgg
cattgcggcttgagcggagatgggggagtgacgcatgcattgtgacatac
cggctacttttactgcagcagcagctggtgctggtgatgctggtatccca
tctcttttaaccgtatcaccacaacactttactcaaccctccctccctcc
ctccctccctcccctctgtcagAGTCAAGCAGCTTCGGGAGCATGTCCGT
GGCCTGGGAAAGGAGTACAACAAGACAGAAGACGACCTCAAGGCCTTGCA
GTCCGTGGGGCAGATCATCGGCGAGGTGCTGAAGCAGCTGGACGATGAGA
GGTTTATCGTCAAGgtaaataaatgagaaggaaagagtggagctgagcac
cactttttccccccctttcctccctgtcagtggcccttcttcccaccctt
ccccactgtcttacaagcagaaatgagtcgcaggataaatgataccagac
atgaccccattcctctccttccctctccctccctccctccaccccccagG
CGAGCAGCGGCCCTCGCTACGTAGTAGGGTGCCGGAACAAGTTGGATAAG
GCCAAGCTCAAGCCCGGGACGCGTGTCAGTCTAGATATGACGACCCTAAC
AATCATGAGGCAGCTCCCGCGAGAGGTGGACCCCAACGTGTACCACATGC
TCCACGAAGACGCTGGCGGCATCTCCTTCTCCCAAATTGGCGgtacgtcc
ctccctccctccctccctccctccctccctcccgtccttttggtatactt
tccaacgaaagcctgggcgacctgtcgatagttttttcaaaaacgattgg
tcgaaggtgccatgacaggcagaccagagtttcttttatcttcggcatcc
ccacccctccgtccttccctccccccgtccctccctccctccctagGCCT
GAACGACCAGATCCGAGAACTGCGCGAGGTCATCGAGCTGCCTCTCACCA
ACCCCGAGCTATTCCACCGCGTCGGCATCAAGCCTCCCAAAGGCGTCCTC
CTCTATGGgtacgtgccctccctccgtcccaccctccctctcctttccga
gccacatttctcaaggcgttggcctctgccattgttgattgatttgacga
atacatggactgcagaaggaggaaactgcagtgctggggtgttgcccgca
ctcacttacccacctacccaacactcacctgctccctctcactccctccc
tccctccctacgccaccagTCCCCCCGGCACCGGCAAGACCCTTCTTGCC
CGCGCCCTGGCCAGCAACATCCAAGCCACTTTCCTCAAGGTCCTGGCCTC
GGCCATCGTGGACAAGTACATCGGGGAGTCCGCGAGGGTCATCAGGGAGA
TGTTCGGGTACGCGCGCGAGCACCAGCCTTGTGTCATTTTCATGGACGAG
GTGGACGCGATCGGGGGCTCCCGCTTTTCCGAAGgtgagcacacttagtc
ggctcgaccttctttccctccctctttccgtccctctttccccccttcca
cgatcgctccacggacttcccagagcgtcgcagccgggcaaacggagtag
acaggcacggaaaagtccacacggttctgaccctccctcccttccttcct
tccatccttccttcctccctcccttccttcctcccttctttccttccttc
cttcctccctcccttctttccttccttcctcccttccttccttcctccct
tcctccctccccagGCACGTCGGCGGACCGCGAGATCCAACGGACGCTGA
TGGAGCTGTTGAACCAGCTCGACGGTTTCGACGGCTTAGGCGCGGTGAAG
ATGGTGATGGCCACCAACAGACCCGATATCCTCGATCCCGCCCTCCTCCG
CCCCGGGCGCCTGGACCGAAAGATCGAGATCCCGCTGCCAAACGAGACGG
GCCGCTTGGACGTGCTCAAGATCCATGCAGgtagggaggaaggtcgagag
ggagggagggcggagaggcgacgaggcgaggaagggagagcctggaaaca
aaagagatcaccacggtaatccacgagtcaagagagtaaatcaaacagtg
ccattcagcccttaatctatgcccctctgccattccccttagCGCCCATC
ACCAAGCGCGGGGAGATCGACTACGAGAGCATCGTGAAGCTCACGGACGG
GTTTAATTGCGCGGACATTCGGAACGTGTGCACGGAGGCGGGCCTGTTTG
CCATCAGGGCGGGGAGGGACTACGTCTTGGAAGAGGACTTCATGAAGGCG
AGTCGGAAGCTGATGGATGCCAAAAAGCTGGAGGGGAAGTTGGAGTACAG
CAAgtacgttggatgggagggagggagggagggagggagggagggaggga
aggagagagggaaggagagagggaaggagagagggaaggagattatgtct
tttatttaattctatgaatgagcgctttcaccgccctatgtattgatttg
tattatcctatctactccttgccctctctgcccccctcaataacagAGTG
TAAAGCCACGACCACGACTGCACGGGAAAGTGAGACGGCCATGCCGCGTG
GAGGGGAAGGGAGAAGACATATAGGAGGCAAACGAGGGAGGGAGAGGAAA
GCAGGCAGCCAGTTGGAAAGACTGTCGAGAAGAACGGAACCACATATAGA
AAAAAGAAGGCACGAGAATCACAAAACA
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protein sequence of NO28G00670.1

>NO28G00670.1-protein ID=NO28G00670.1-protein|Name=NO28G00670.1|organism=Nannochloropsis oceanica|type=polypeptide|length=400bp
MAPMTVAVESMDVDRAQLLDQYRAKIREHHEVELRVKQLREHVRGLGKEY
NKTEDDLKALQSVGQIIGEVLKQLDDERFIVKASSGPRYVVGCRNKLDKA
KLKPGTRVSLDMTTLTIMRQLPREVDPNVYHMLHEDAGGISFSQIGGLND
QIRELREVIELPLTNPELFHRVGIKPPKGVLLYGPPGTGKTLLARALASN
IQATFLKVLASAIVDKYIGESARVIREMFGYAREHQPCVIFMDEVDAIGG
SRFSEGTSADREIQRTLMELLNQLDGFDGLGAVKMVMATNRPDILDPALL
RPGRLDRKIEIPLPNETGRLDVLKIHAAPITKRGEIDYESIVKLTDGFNC
ADIRNVCTEAGLFAIRAGRDYVLEEDFMKASRKLMDAKKLEGKLEYSKV*
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Synonyms
Publications