NO28G00590.1, NO28G00590.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO28G00590.1
Unique NameNO28G00590.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1197
Alignment locationchr28:208824..210882 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:208824..210882 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO28G00590.1 vs.
Match: EWM20929.1 (t-complex protein 1 subunit zeta isoform a [Nannochloropsis gaditana])

HSP 1 Score: 143.7 bits (361), Expect = 8.500e-31
Identity = 77/143 (53.85%), Postives = 90/143 (62.94%), Query Frame = 0 
Query:   33 TTCRAPLSSSSASAFTSAISNEPFYSSLLNPPITFSFESEIKKAIRSCHTMANSIEGTSLHQKF----------------FLTGQVGQGLILFKDQDGCWSAPAAVGAIGGGIGLQGGGDITDYVLFFKTPDAQEAMKGGCQL 160
            TT     S SS +     ++ EPF+ + LN PITFSFESEIKKA+RSCH M  S E   L                    FLTGQ G GL+L KD +G WSAPA VGA+GGG+GLQ GG++TDYVLFFKT +AQEAMKG  QL
Sbjct:  593 TTSSFASSPSSGAPLPVTVAQEPFWKAYLNSPITFSFESEIKKAVRSCHNMQASPEAPVLRSLLKQCDGLLFLTVARAGCFLTGQAGSGLVLLKDSEGNWSAPACVGAVGGGVGLQAGGEVTDYVLFFKTEEAQEAMKGATQL 735
The following BLAST results are available for this feature:
BLAST of NO28G00590.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20929.18.500e-3153.85t-complex protein 1 subunit zeta isoform a [Nannoc... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO28G00590NO28G00590Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO28G00590.1NO28G00590.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO28G00590.1.cds1NO28G00590.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00590.1.cds2NO28G00590.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00590.1.cds3NO28G00590.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00590.1.cds4NO28G00590.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00590.1.cds5NO28G00590.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO28G00590.1 ID=NO28G00590.1|Name=NO28G00590.1|organism=Nannochloropsis oceanica|type=mRNA|length=1197bp
ATGGCCCTTCCGATGCTTGTCAGCCGGCAGCCACCCTCGGGTTCGACGAT
GAAGGACCCTCCAACTGCCCCATATTCCTCCTCCTCCTCCTCCGACACCA
CCTGTCGTGCCCCTCTTTCCTCCTCCTCCGCTTCCGCCTTCACCTCCGCC
ATCTCCAACGAGCCCTTCTATAGCTCTTTGCTCAATCCTCCCATCACCTT
TTCCTTCGAAAGCGAGATCAAGAAGGCAATTCGTTCGTGCCATACCATGG
CGAACTCCATTGAAGGGACGTCGTTGCATCAGAAGTTTTTCCTTACAGGT
CAAGTCGGTCAAGGCCTGATCCTTTTTAAGGACCAGGATGGATGTTGGTC
GGCGCCTGCTGCTGTGGGTGCCATCGGGGGAGGTATTGGCCTGCAGGGAG
GCGGGGATATCACAGACTACGTTCTTTTCTTTAAGACCCCCGACGCGCAA
GAGGCGATGAAGGGGGGGTGTCAGCTGGCCGTGGGTGTGAGTGGAGGGAT
CGCAGCAGGGCCCGTTGGTCGCTCTGGGGTGTGGCAGTATCATTGGCGGT
TGGATACGTGTGACGTGGGGTGTGTCTGGGCATTTTCCGGGAGTAAAGGG
TGGTACGCCGGCGGTGCTCTGACCCTGCAGCTTCTGTGTGGGTTAGGATG
GATGAACGAGCAGATGTACGGGAAAAAGAGGGAGGGAGGGAGAGAGGGAG
GGAACGAGGGAGGGATGCGGTTGGCCGACATTTTGGGGGGTAAGGTGGGC
CCGCCATTGGAAGCTCAGGAGCTATATAAGTGCTTGGAGGGGTTGACAAA
GTAGGATTTAAGGGAGGGAGGGAAGAAGGGAGAGGGGGAGGGAAGGAGTG
TGTGGTTTGCGTGTGGCCAGAGTAGTGGGCAAGCGTTTGGAGGAGCTGGG
GCTGGTGATGAGGGAGAGAGGGAGGGAGCAAGCAGTATGACGATAAGAAG
GATGAGGTAGGCCGTGGCTTTCAGTAGGCAAAGACGAAGGAGGTGGGTAA
AAGGAGAGAGGAAGGCAGTAGGGAAGCGATAGAGACATGGATAGAAGCAA
TGGAATTATGTGCATGTACCGCATCAGAGGTACATTCGAAAGCGAATGCA
AGGGGGAAGACGAGGGAGAGAAGAAGGAAAGGAGTCGGATGGTATTCAGT
AAAGCATATGGGTCTGTGGTCATAAAGAATAGGAGGGAGGGTAGAGC
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protein sequence of NO28G00590.1

>NO28G00590.1-protein ID=NO28G00590.1-protein|Name=NO28G00590.1|organism=Nannochloropsis oceanica|type=polypeptide|length=268bp
MALPMLVSRQPPSGSTMKDPPTAPYSSSSSSDTTCRAPLSSSSASAFTSA
ISNEPFYSSLLNPPITFSFESEIKKAIRSCHTMANSIEGTSLHQKFFLTG
QVGQGLILFKDQDGCWSAPAAVGAIGGGIGLQGGGDITDYVLFFKTPDAQ
EAMKGGCQLAVGVSGGIAAGPVGRSGVWQYHWRLDTCDVGCVWAFSGSKG
WYAGGALTLQLLCGLGWMNEQMYGKKREGGREGGNEGGMRLADILGGKVG
PPLEAQELYKCLEGLTK*
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mRNA from alignment at chr28:208824..210882-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO28G00590.1 ID=NO28G00590.1|Name=NO28G00590.1|organism=Nannochloropsis oceanica|type=mRNA|length=2059bp|location=Sequence derived from alignment at chr28:208824..210882- (Nannochloropsis oceanica)
ATGGCCCTTCCGATGCTTGTCAGCCGGCAGCCACCCTCGGGTTCGACGAT
GAAGGTATGTGAGGTCGAGCAGCTCGTCTGCTTCGAGTAGAACTGGGAGG
GAGAAATTAGTGGAGGAAAGGAGTGAGGGTCGACAAGAGGGGCGGAAGAG
GAAGGCGCCAAGGGCAGTATGGGCCGTAATAACATCATAAAAAAGAAGGA
AGATAGGAAAATAGTCTGTCTCGCCACTTATCCTTTTTTCCATACAAAAC
TCAGGACCCTCCAACTGCCCCATATTCCTCCTCCTCCTCCTCCGACACCA
CCTGTCGTGCCCCTCTTTCCTCCTCCTCCGCTTCCGCCTTCACCTCCGCC
ATCTCCAACGAGCCCTTCTATAGCTCTTTGCTCAATCCTCCCATCACCTT
TTCCTTCGAAAGCGAGATCAAGAAGGCAATTCGTTCGTGCCATACCATGG
CGAACTCCATTGAAGGGACGTCGTTGCATCAGAAGGTGAAACATTGCGAC
GGCCTGGCCTTTATGACAGTGGCCCGGGGAGGGGTGAGCAGAAAGAGAAG
GATGGAGTAGGGGGAGTGGATGTCATGACTTCCATCCTCCCACTCCTCCC
ACCCCTCCTTACGGCTCAACTCCGACAGGACCTCTTTCTCCAGAGGGACG
CCCCCCACCCCTCCCCTCATCCCTCCCTCCCTCTCTTTTCCCCTCTCTCC
CATTAGTTTTTCCTTACAGGTCAAGTCGGTCAAGGCCTGATCCTTTTTAA
GGACCAGGATGGATGTTGGTCGGCGCCTGCTGCTGTGGGTGCCATCGGGG
GAGGGTGAGGAGGGAAGAAGGGAGGGAGAGAAGGAGGAAGGGTGGGAGGG
AGGGAGACAAAGAGGAAAAGAGGGAGGGAGGGAGGGAGGGAGGGAAGAGG
GATTGATCGATCCCTGCTCCTTCGGGTGCTTTGGATGGAAAAGAGCAAGG
GGGATTGGGATGAAGGGTGAGGAGAAGGGGGTCCATAACTTTACCTAGAA
ACTCCATATATGGGTTTTTTTCTTCCTCCCCACCCCTCCCTTCCTCCTTT
CCTCCCTCCTTCCTACTCTTCCTCAGTATTGGCCTGCAGGGAGGCGGGGA
TATCACAGACTACGTTCTTTTCTTTAAGACCCCCGACGCGCAAGAGGCGA
TGAAGGGGGGGTGTCAGCTGGCCGTGGGTGTGAGTGGAGGGATCGCAGCA
GGGCCCGTTGGTCGCTCTGGGGTGTGGCAGTATCATTGGCGGTTGGATAC
GTGTGACGTGGGGTGAGTGGAGGAGGGAGAGAGGGAGGGAGCGGGCAGTG
TGGATTCTGGGGAAAGGGTGAGAGGTAAGTTGTGTTGGTGCCATTGTGGG
GTGGTCGATGATTGAAACAACAGGAGATCAGTGTTCCATTCCCTCCCCTC
CTCCCTCCGCCCTTCCCTCGCTCCCTTCTAGGTGTGTCTGGGCATTTTCC
GGGAGTAAAGGGTGGTACGCCGGCGGTGCTCTGACCCTGCAGCTTCTGTG
TGGGTTAGGATGGATGAACGAGCAGATGTACGGGAAAAAGAGGGAGGGAG
GGAGAGAGGGAGGGAACGAGGGAGGGATGCGGTTGGCCGACATTTTGGGG
GGTAAGGTGGGCCCGCCATTGGAAGCTCAGGAGCTATATAAGTGCTTGGA
GGGGTTGACAAAGTAGGATTTAAGGGAGGGAGGGAAGAAGGGAGAGGGGG
AGGGAAGGAGTGTGTGGTTTGCGTGTGGCCAGAGTAGTGGGCAAGCGTTT
GGAGGAGCTGGGGCTGGTGATGAGGGAGAGAGGGAGGGAGCAAGCAGTAT
GACGATAAGAAGGATGAGGTAGGCCGTGGCTTTCAGTAGGCAAAGACGAA
GGAGGTGGGTAAAAGGAGAGAGGAAGGCAGTAGGGAAGCGATAGAGACAT
GGATAGAAGCAATGGAATTATGTGCATGTACCGCATCAGAGGTACATTCG
AAAGCGAATGCAAGGGGGAAGACGAGGGAGAGAAGAAGGAAAGGAGTCGG
ATGGTATTCAGTAAAGCATATGGGTCTGTGGTCATAAAGAATAGGAGGGA
GGGTAGAGC
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Coding sequence (CDS) from alignment at chr28:208824..210882-

>NO28G00590.1 ID=NO28G00590.1|Name=NO28G00590.1|organism=Nannochloropsis oceanica|type=CDS|length=804bp|location=Sequence derived from alignment at chr28:208824..210882- (Nannochloropsis oceanica)
ATGGCCCTTCCGATGCTTGTCAGCCGGCAGCCACCCTCGGGTTCGACGAT
GAAGGACCCTCCAACTGCCCCATATTCCTCCTCCTCCTCCTCCGACACCA
CCTGTCGTGCCCCTCTTTCCTCCTCCTCCGCTTCCGCCTTCACCTCCGCC
ATCTCCAACGAGCCCTTCTATAGCTCTTTGCTCAATCCTCCCATCACCTT
TTCCTTCGAAAGCGAGATCAAGAAGGCAATTCGTTCGTGCCATACCATGG
CGAACTCCATTGAAGGGACGTCGTTGCATCAGAAGTTTTTCCTTACAGGT
CAAGTCGGTCAAGGCCTGATCCTTTTTAAGGACCAGGATGGATGTTGGTC
GGCGCCTGCTGCTGTGGGTGCCATCGGGGGAGGTATTGGCCTGCAGGGAG
GCGGGGATATCACAGACTACGTTCTTTTCTTTAAGACCCCCGACGCGCAA
GAGGCGATGAAGGGGGGGTGTCAGCTGGCCGTGGGTGTGAGTGGAGGGAT
CGCAGCAGGGCCCGTTGGTCGCTCTGGGGTGTGGCAGTATCATTGGCGGT
TGGATACGTGTGACGTGGGGTGTGTCTGGGCATTTTCCGGGAGTAAAGGG
TGGTACGCCGGCGGTGCTCTGACCCTGCAGCTTCTGTGTGGGTTAGGATG
GATGAACGAGCAGATGTACGGGAAAAAGAGGGAGGGAGGGAGAGAGGGAG
GGAACGAGGGAGGGATGCGGTTGGCCGACATTTTGGGGGGTAAGGTGGGC
CCGCCATTGGAAGCTCAGGAGCTATATAAGTGCTTGGAGGGGTTGACAAA
GTAG
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Synonyms
Publications