NO28G00300.2, NO28G00300.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO28G00300.2
Unique NameNO28G00300.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2353
Alignment locationchr28:112228..115717 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:112228..115717 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO28G00300.2 vs.
Match: CEM16436.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 171.0 bits (432), Expect = 7.000e-39
Identity = 96/250 (38.40%), Postives = 142/250 (56.80%), Query Frame = 0 
Query:  136 SSSSSPTTSSSSLSPHEEAIRRAQVEMAVEDHNGLLKLEGGGVFGEKPGHFI-VMPMTELFDPPLGSILHDKLQYSDKIMLPKSFIYEVLGRKLEPPWHFEITPLDDRYT------------------SAPSPRQAAALRAWRRER----SIPCLHCSNFDFRAPEHYIFIPDWMMKALRLRPRDVVSMRFVRLPEGGLVSLQPHQAAFNKLSNVHAVLEQELKYYSCVTQGTTIRFKHNGKEYALDVVE 363
            +S  SP+  ++  +    A+ R++ E  VED N L K EG      + G F+ VMP++E F+PP G   HD + Y DK+  P++   ++L R LE PW F +  +D +                    +  S  +    R   R+R     +  ++CS  DFRAPE+++F+PDWMM AL L PRD++   FVRLPEG  V+ QPH +AF K+SN  AVLE+EL++YS +T G+TI  K+N + + +DVVE
Sbjct:   73 ASMESPSQHTAVSNHFSSALERSREEQLVEDINILEKAEG------RHGRFLTVMPISEKFNPPPGHFSHDHVMYGDKVSFPRTISTQLLERNLEIPWQFVLEKIDRKELEKVWGGTATTTTSTTTSKTTDSDTEGDGDRIGGRQRYYKSGLKRVYCSTLDFRAPENFVFVPDWMMAALNLMPRDLLYCEFVRLPEGTTVTFQPHNSAFLKMSNHQAVLERELRHYSSLTAGSTIVIKYNRRNFLIDVVE 316
The following BLAST results are available for this feature:
BLAST of NO28G00300.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CEM16436.17.000e-3938.40unnamed protein product [Vitrella brassicaformis C... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO28G00300NO28G00300Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO28G00300.2NO28G00300.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO28G00300.2.cds1NO28G00300.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00300.2.cds2NO28G00300.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00300.2.cds3NO28G00300.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00300.2.cds4NO28G00300.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00300.2.cds5NO28G00300.2.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00300.2.cds6NO28G00300.2.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00300.2.cds7NO28G00300.2.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO28G00300.2 ID=NO28G00300.2|Name=NO28G00300.2|organism=Nannochloropsis oceanica|type=mRNA|length=2353bp
TTGGTGTTGGTGAAAATACTGCTACTCTTGGAAGAGAAAGCAAGCCTGCA
TGTGCATGCATTGATTGTGTCAAGAATGAGCGTTTCATTGAATCTTTTTC
CACGTCCTATGCCATCTTGACGGGGCCACTGGGGCATATGCACTCCTTCC
AAAGACCAATATGTACATGCTGCCCCTATCAAGCTGTGGTTGGCAGGACA
GCATACCTCCATCCACCTTCTCCTCCTTTTCTCTCCCTTCCCATAGCCAA
GACTGCCGCTGCATGTGCCTTCATTCCTCCTTGTCCTCCTGCTGATAATG
TCGGTCGTAGCACGAGCAGCAGCATCATCAGGAGCAGCAGTGTAAGGGAC
TCTTGTATGTTCGCCCTGCCGCCGTCAACGTCGCTCCCCTTCCTTCTCCC
GGGCATCCGCGCTGCTCCTTCTGCTGCAGCACTGCTGCTGCTTCTCATGT
TGTAGAGGGAAGGCATGTGCGTTTAAGTTGGACGGGATGATTGAAGGAAG
CTCAAGAAGCGGCGAAGGCAGCGATTATTCAATCGAGGAGGACGATGAGG
AGGAGGAGGAGCATGGCACCGCTTGATACTTGGGAAATAAAAATGGCTTC
TTGTGTCTCGAAAGAGGAAGAGGAAGAAACGGAGGAGAAGGAGGAGCAGG
CGGTAGAGGGGAAAGAGTAGGAAGAGGACATGGCGCGTTATTCCCTAAAA
GGGCAAATCGATGCCGGCTTGGTAGATACCTTGCTTCCCACACGACCCCA
CTCAACCAGAATCCCACCGCATGCGAACACATCCACAGGCCAAAATGCGG
CAACCATCCGATAGCAGCCATAGCAGCAGGAGAAAAAGGAGGAGATGCTC
TTGCATTTTGTACCTGTCCTCCGCCCTTTTTCTCCTTGTCGTTTACCTTC
CTCCGTCCACCCTAGCCTCCTCCCTCTCCCGAAGCAGCAGCAGCATCAAC
AATCTCCTCAATGCCCCCACGACAAATATAGCAGCAGCAGCAGCCGCACC
AGCAGCAGGGACAACAAAAAGTAGAAGAGCGAATGGATGGTGGTGGCGGC
ACGTCCGAGGTGGGGCGAAAGGCAAAAGAAAAGACGCAGAAGAAGAAACA
GAAGCCGTCGCCAAAGCAGCGGCCGATGAAGAGCAAGAGGAGACGGAGGA
GGAGACTCCGTTCCTCTCCTTCCCCTCCTCGTCCTCCTCCCCCACCACCT
CCTCTTCCTCCCTCTCCCCACACGAAGAAGCGATTCGACGCGCACAAGTG
GAGATGGCTGTGGAAGACCACAATGGATTGCTCAAGTTGGAGGGAGGAGG
GGTCTTTGGAGAAAAGCCAGGCCATTTCATCGTCATGCCTATGACTGAGC
TGTTCGATCCTCCCCTCGGCTCCATCCTCCACGATAAGCTGCAGTACTCG
GATAAGATCATGCTGCCCAAATCCTTCATCTATGAGGTTTTAGGCCGCAA
GCTCGAGCCGCCCTGGCACTTCGAAATCACCCCCTTGGATGACAGGTACA
CCAGCGCCCCGAGTCCCCGACAAGCAGCAGCCCTGCGTGCATGGAGAAGA
GAGCGTTCCATCCCCTGCCTCCATTGCAGTAATTTTGACTTTAGGGCACC
GGAGCATTATATCTTTATTCCCGATTGGATGATGAAAGCCCTGCGCCTAA
GGCCTCGTGACGTGGTGTCCATGCGCTTCGTCCGCCTTCCTGAGGGCGGC
CTGGTCTCCCTCCAGCCCCATCAAGCCGCCTTCAACAAACTATCCAACGT
GCATGCCGTCCTCGAACAAGAGCTCAAGTACTACTCCTGTGTGACGCAAG
GCACCACCATCCGCTTCAAGCACAACGGCAAGGAGTATGCACTCGACGTG
GTGGAGACTCTCGGGCCCAAGGACGTCAAAGTGCCCGCTATCAAGGTATA
GGTCGACCTCTTTCTCTCCCTCCTTCCCTCCCTTCTTCCCTCCCTTCCGG
CATGCATCTTTTTCCTTTTCCGATTTTCTAGGAAGGACCCCCGAGATCTC
CTTCTCTCCCTCCGTCCCCCCCTTCACATATTCCTCTCTTTCATCCACGC
CTCCCTTCTTTCATCCATCCAAATCATCCTTCCGCTCTTCCCACCCTCCT
TTCCTCCCTCCTTCCCTCTTTTCTTTCATTTAGGTCCAGGATAGTGACAT
CCGGACCGACATTCGACCCTCCAAGGAAGAGGAAGAGAAACGAAAGCGAA
AGCAAGCAGCGGCGACAGCAGCCCAGAAAGCGAGGGAGGAAGAGGAAGGG
CCGGAGGAGGAAGAGTGATGAGAGGAAAAGGAGGGAGGGCTGGGGTAAGA
GGACAGGTGGAACTTCAGGCAGACAAAAGTAAAGCAAAACATCCAACAGT
CAG
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protein sequence of NO28G00300.2

>NO28G00300.2-protein ID=NO28G00300.2-protein|Name=NO28G00300.2|organism=Nannochloropsis oceanica|type=polypeptide|length=377bp
MRTHPQAKMRQPSDSSHSSRRKRRRCSCILYLSSALFLLVVYLPPSTLAS
SLSRSSSSINNLLNAPTTNIAAAAAAPAAGTTKSRRANGWWWRHVRGGAK
GKRKDAEEETEAVAKAAADEEQEETEEETPFLSFPSSSSSPTTSSSSLSP
HEEAIRRAQVEMAVEDHNGLLKLEGGGVFGEKPGHFIVMPMTELFDPPLG
SILHDKLQYSDKIMLPKSFIYEVLGRKLEPPWHFEITPLDDRYTSAPSPR
QAAALRAWRRERSIPCLHCSNFDFRAPEHYIFIPDWMMKALRLRPRDVVS
MRFVRLPEGGLVSLQPHQAAFNKLSNVHAVLEQELKYYSCVTQGTTIRFK
HNGKEYALDVVETLGPKDVKVPAIKV*
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mRNA from alignment at chr28:112228..115717+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO28G00300.2 ID=NO28G00300.2|Name=NO28G00300.2|organism=Nannochloropsis oceanica|type=mRNA|length=3490bp|location=Sequence derived from alignment at chr28:112228..115717+ (Nannochloropsis oceanica)
TTGGTGTTGGTGAAAATACTGCTACTCTTGGAAGAGAAAGCAAGCCTGCA
TGTGCATGCATTGATTGTGTCAAGAATGAGCGTTTCATTGAATCTTTTTC
CACGTCCTATGCCATCTTGACGGGGCCACTGGGGCATATGCACTCCTTCC
AAAGACCAATATGTACATGCTGCCCCTATCAAGCTGTGGTTGGCAGGACA
GCATACCTCCATCCACCTTCTCCTCCTTTTCTCTCCCTTCCCATAGCCAA
GACTGCCGCTGCATGTGCCTTCATTCCTCCTTGTCCTCCTGCTGATAATG
TCGGTCGTAGCACGAGCAGCAGCATCATCAGGAGCAGCAGTGTAAGGGAC
TCTTGTATGTTCGCCCTGCCGCCGTCAACGTCGCTCCCCTTCCTTCTCCC
GGGCATCCGCGCTGCTCCTTCTGCTGCAGCACTGCTGCTGCTTCTCATGT
TGTAGAGGGAAGGCATGTGCGTTTAAGTTGGACGGGATGATTGAAGGAAG
CTCAAGAAGCGGCGAAGGCAGCGATTATTCAATCGAGGAGGACGATGAGG
AGGAGGAGGAGCATGGCACCGCTTGATACTTGGGAAATAAAAATGGCTTC
TTGTGTCTCGAAAGAGGAAGAGGAAGAAACGGAGGAGAAGGAGGAGCAGG
CGGTAGAGGGGAAAGAGTAGGAAGAGGACATGGCGCGTTATTCCCTAAAA
GGGCAAATCGATGCCGGCTTGGTAGATACCTTGCTTCCCACACGACCCCA
CTCAACCAGAATCCCACCGCATGCGAACACATCCACAGGCCAAAATGCGG
CAACCATCCGATAGCAGCCATAGCAGCAGGAGAAAAAGGAGGAGATGCTC
TTGCATTTTGTACCTGTCCTCCGCCCTTTTTCTCCTTGTCGTTTACCTTC
CTCCGTCCACCCTAGCCTCCTCCCTCTCCCGAAGCAGCAGCAGCATCAAC
AATCTCCTCAATGCCCCCACGACAAATATAGCAGCAGCAGCAGCCGCACC
AGCAGCAGGGACAACAAAAAGTAGAAGAGCGAATGGATGGTGGTGGCGGC
ACGTCCGAGGTGGGGCGAAAGGCAAAAGGTGAGATAGGAAGGGAAGGAGG
GAGGGAAGGAGGGAGGGGATGAAGGGAGGGGTGTCTGTGAGCATGGAGAG
AGAAGGGCAAGGACCCTTTAATCCCATCATCCTCCCTCTTCATACTTTCT
ACAGAAAAGACGCAGAAGAAGAAACAGAAGCCGTCGCCAAAGCAGCGGCC
GATGAAGAGCAAGAGGAGACGGAGGAGGAGACTCCGTTCCTCTCCTTCCC
CTCCTCGTCCTCCTCCCCCACCACCTCCTCTTCCTCCCTCTCCCCACACG
AAGAAGCGATTCGACGCGCACAAGTGGAGATGGCTGTGGAAGACCACAAT
GGATTGCTCAAGTTGGAGGGAGGAGGGGTCTTTGGAGAAAAGCCAGGTGA
GGGAGGGAGGGAGGGAGGGAGGGATGTTGGGTTTATGTGGGTGAATGGTG
TGAGTAAGTTTGGGAGGAAAGAACGAAATGCAACAGAGAACAGGCGAGGG
AAGGATAAAGGAAGAGAGGGAGGAAGGGAGGGAAGGCAGCATGCGACAGC
CATCACATCTATCGCGCTCCTTCTGACCTCCTCTCCCTCCCTCCCTCCCT
TCCTCCATCACCCTCCCCTTTGTGCAGGCCATTTCATCGTCATGCCTATG
ACTGAGCTGTTCGATCCTCCCCTCGGCTCCATCCTCCACGATAAGCTGCA
GTACTCGGATAAGGTACGCCCTCCCTCCCTCCCTCCCTCCCTCCCCCCTC
CCCCCTCCCTCCCCCCCTCCCTCCCTCCCTCCCTCCCCCCTCCCTTCCCT
TCATCGGCGCTTGCAATCCTCCCCATCGTCTCCGTCTCGCCAAATCCCTT
CGATTACCACCCATTCCTTCCCTTCCTTTCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTTCCTTCCTTCCTCCCAAGATCATGCTGCCCAAA
TCCTTCATCTATGAGGTTTTAGGCCGCAAGCTCGAGCCGCCCTGGCACTT
CGAAATCACCCCCTTGGATGACAGGTGAGGGAGAGAGGGATGGATGGAGG
GAGGGAGGATGATCGTGTCGTTTCCCGCCTTTAATTCGAGCCACCAGCGG
ACGAGAATTCCCCACTCGACTGGATGATGGTCAGACATCTAACCCTCGCT
CCCTCCCTCCCTCGTTCCCTCCCCCGCTTCCTCGCTCCCTCCCTCCCTCT
CAGGTACACCAGCGCCCCGAGTCCCCGACAAGCAGCAGCCCTGCGTGCAT
GGAGAAGAGAGCGTTCCATCCCCTGCCTCCATTGCAGTAATTTTGACTTT
AGGGCACCGGAGCATTATATCTTTATTCCCGATTGGATGATGAAAGCCCT
GCGCCTAAGGCCTCGTGACGTGGTGTCCATGCGCTTCGTCCGCCTTCCTG
GTATGCACGGTCCTGGCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTTCTCCCTCTGTCGGCT
TTTGGATCTCACTCAATTCCCACCGCTCACCGCCTGCCTTCCCTCACTCC
CTCCCTCCCTCCCTCCTCCCAGAGGGCGGCCTGGTCTCCCTCCAGCCCCA
TCAAGCCGCCTTCAACAAACTATCCAACGTGCATGCCGTCCTCGAACAAG
AGCTCAAGTACTACTCCTGTGTGACGCAAGGCGTAAGTCCTCCCTCCCTC
CCTTCCTCCCTCCCTCCCTCCCTCCCTCCTTCTACCCCTTGCTCCCTCCC
GTGCTTCCTTTGCTCCCCCTTCTCTCCTTCCCTCCCTCTCTTCCTTGCTT
CCACACAATTCGATCGATCTTTCGGGCGAGGAACAAGTCTCTTTCATCGA
CCCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCAGACCACCATCCG
CTTCAAGCACAACGGCAAGGAGTATGCACTCGACGTGGTGGAGACTCTCG
GGCCCAAGGACGTCAAAGTGCCCGCTATCAAGGTATAGGTCGACCTCTTT
CTCTCCCTCCTTCCCTCCCTTCTTCCCTCCCTTCCGGCATGCATCTTTTT
CCTTTTCCGATTTTCTAGGAAGGACCCCCGAGATCTCCTTCTCTCCCTCC
GTCCCCCCCTTCACATATTCCTCTCTTTCATCCACGCCTCCCTTCTTTCA
TCCATCCAAATCATCCTTCCGCTCTTCCCACCCTCCTTTCCTCCCTCCTT
CCCTCTTTTCTTTCATTTAGGTCCAGGATAGTGACATCCGGACCGACATT
CGACCCTCCAAGGAAGAGGAAGAGAAACGAAAGCGAAAGCAAGCAGCGGC
GACAGCAGCCCAGAAAGCGAGGGAGGAAGAGGAAGGGCCGGAGGAGGAAG
AGTGATGAGAGGAAAAGGAGGGAGGGCTGGGGTAAGAGGACAGGTGGAAC
TTCAGGCAGACAAAAGTAAAGCAAAACATCCAACAGTCAG
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Coding sequence (CDS) from alignment at chr28:112228..115717+

>NO28G00300.2 ID=NO28G00300.2|Name=NO28G00300.2|organism=Nannochloropsis oceanica|type=CDS|length=1131bp|location=Sequence derived from alignment at chr28:112228..115717+ (Nannochloropsis oceanica)
ATGCGAACACATCCACAGGCCAAAATGCGGCAACCATCCGATAGCAGCCA
TAGCAGCAGGAGAAAAAGGAGGAGATGCTCTTGCATTTTGTACCTGTCCT
CCGCCCTTTTTCTCCTTGTCGTTTACCTTCCTCCGTCCACCCTAGCCTCC
TCCCTCTCCCGAAGCAGCAGCAGCATCAACAATCTCCTCAATGCCCCCAC
GACAAATATAGCAGCAGCAGCAGCCGCACCAGCAGCAGGGACAACAAAAA
GTAGAAGAGCGAATGGATGGTGGTGGCGGCACGTCCGAGGTGGGGCGAAA
GGCAAAAGAAAAGACGCAGAAGAAGAAACAGAAGCCGTCGCCAAAGCAGC
GGCCGATGAAGAGCAAGAGGAGACGGAGGAGGAGACTCCGTTCCTCTCCT
TCCCCTCCTCGTCCTCCTCCCCCACCACCTCCTCTTCCTCCCTCTCCCCA
CACGAAGAAGCGATTCGACGCGCACAAGTGGAGATGGCTGTGGAAGACCA
CAATGGATTGCTCAAGTTGGAGGGAGGAGGGGTCTTTGGAGAAAAGCCAG
GCCATTTCATCGTCATGCCTATGACTGAGCTGTTCGATCCTCCCCTCGGC
TCCATCCTCCACGATAAGCTGCAGTACTCGGATAAGATCATGCTGCCCAA
ATCCTTCATCTATGAGGTTTTAGGCCGCAAGCTCGAGCCGCCCTGGCACT
TCGAAATCACCCCCTTGGATGACAGGTACACCAGCGCCCCGAGTCCCCGA
CAAGCAGCAGCCCTGCGTGCATGGAGAAGAGAGCGTTCCATCCCCTGCCT
CCATTGCAGTAATTTTGACTTTAGGGCACCGGAGCATTATATCTTTATTC
CCGATTGGATGATGAAAGCCCTGCGCCTAAGGCCTCGTGACGTGGTGTCC
ATGCGCTTCGTCCGCCTTCCTGAGGGCGGCCTGGTCTCCCTCCAGCCCCA
TCAAGCCGCCTTCAACAAACTATCCAACGTGCATGCCGTCCTCGAACAAG
AGCTCAAGTACTACTCCTGTGTGACGCAAGGCACCACCATCCGCTTCAAG
CACAACGGCAAGGAGTATGCACTCGACGTGGTGGAGACTCTCGGGCCCAA
GGACGTCAAAGTGCCCGCTATCAAGGTATAG
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Synonyms
Publications